>RL5A_ORYSA (P49625) 60S ribosomal protein L5-1|
          Length = 304

 Score =  121 bits (303), Expect = 9e-28
 Identities = 60/68 (88%), Positives = 64/68 (94%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVERLN 270
           +KKGI+ADGMEALYKKVHAAIRADPT+AKSTK+ P THKRYN KKLTYEQRKASLVERLN
Sbjct: 227 LKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLN 286

Query: 269 ALNSSGGA 246
           ALNSS GA
Sbjct: 287 ALNSSAGA 294

>RL5B_ORYSA (Q8L4L4) 60S ribosomal protein L5-2|
          Length = 304

 Score =  120 bits (300), Expect = 2e-27
 Identities = 59/68 (86%), Positives = 64/68 (94%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVERLN 270
           +KKGI+ADGME+LYKKVHAAIRADPT+AKSTK+ P THKRYN KKLTYEQRKASLVERLN
Sbjct: 227 LKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLN 286

Query: 269 ALNSSGGA 246
           ALNSS GA
Sbjct: 287 ALNSSAGA 294

>RL5_CUCSA (Q6UNT2) 60S ribosomal protein L5|
          Length = 302

 Score = 98.6 bits (244), Expect = 6e-21
 Identities = 49/65 (75%), Positives = 54/65 (83%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVERLN 270
           IKKGIEAD +E LYKKVHAAIRA+P   KS K  PK HKRYN KKLTY++RKA LVERLN
Sbjct: 226 IKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLN 285

Query: 269 ALNSS 255
           ALNS+
Sbjct: 286 ALNSA 290

>RL5_SOLME (P93779) 60S ribosomal protein L5 (Fragment)|
          Length = 121

 Score = 98.6 bits (244), Expect = 6e-21
 Identities = 46/67 (68%), Positives = 55/67 (82%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVERLN 270
           IK  +  D +E +YKKVHAAIR DP+  KS K+PPKTHKRYN KKLTYE+RKA L+ERLN
Sbjct: 45  IKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLN 104

Query: 269 ALNSSGG 249
           ALN++GG
Sbjct: 105 ALNAAGG 111

>RL5_ARATH (P49227) 60S ribosomal protein L5|
          Length = 301

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 43/67 (64%), Positives = 53/67 (79%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVERLN 270
           IKKG+EA+ +E +YKKVHAAIRA+P   K+ K  PK HKRYN KKLTYE+RK  L+ER+ 
Sbjct: 226 IKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVK 285

Query: 269 ALNSSGG 249
           ALN +GG
Sbjct: 286 ALNGAGG 292

>RL5_BOMMO (O76190) 60S ribosomal protein L5|
          Length = 299

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 8/69 (11%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPT-IAKSTKEPPKTHKRYNPKKLT-------YEQRK 294
           IK G+ AD +EA+YKK H AIRADP+   K  K+     KR+N +KLT        +Q+K
Sbjct: 227 IKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 286

Query: 293 ASLVERLNA 267
           AS ++RL A
Sbjct: 287 ASFIKRLQA 295

>RL5_NEUCR (O59953) 60S ribosomal protein L5 (CPR4)|
          Length = 301

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHK-------RYNPKKLTYEQRKA 291
           I+  +EADG+E LY + HAAIR DP     ++ P KT +       +Y   KLT EQR A
Sbjct: 230 IEDDLEADGLEDLYAEAHAAIREDPFKKAESEAPKKTKEEWKAESLKYKKSKLTREQRAA 289

Query: 290 SLVERLNALNS 258
            + ER+ AL S
Sbjct: 290 GVQERIAALRS 300

>RL5_STYCL (Q26481) 60S ribosomal protein L5|
          Length = 294

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 35/52 (67%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRK 294
           IK G+ AD +E +Y K HAAIR DPT  K T    KT KR+N KK+T+ QR+
Sbjct: 226 IKHGVTADTVEEMYTKAHAAIREDPTPKKKTDFAGKT-KRWNRKKMTFSQRR 276

>RL5_HELAN (O65353) 60S ribosomal protein L5|
          Length = 297

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADP---TIAKSTKEPPKTHKRYNPKKLTYEQRKASL 285
           IK G+ AD +E LYKK H AIRA+P   T+AK  K  PK  KR+  KKLT EQR+  +
Sbjct: 227 IKLGLNADAIEGLYKKAHEAIRANPARKTVAK--KAHPK--KRWTEKKLTREQRQGKV 280

>RL5_CAEEL (P49405) 60S ribosomal protein L5|
          Length = 293

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 24/55 (43%), Positives = 37/55 (67%)
 Frame = -2

Query: 440 GIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVER 276
           G+ AD + A Y+KVH+AIRAD + A   K+  K  KR+  K+LTY++RK  + ++
Sbjct: 229 GLNADNLVATYQKVHSAIRADASPA--AKKAAKPSKRHTAKRLTYDERKQRVADK 281

>RL5A_XENLA (P15125) 60S ribosomal protein L5-A|
          Length = 295

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 26/58 (44%), Positives = 36/58 (62%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVER 276
           IK G+ AD +E LYKK HA IR +P   K  K+  K  KR+N  KL+ EQ+K  + ++
Sbjct: 226 IKNGVTADQVEDLYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKKDRVAQK 282

>RL5B_XENLA (P15126) 60S ribosomal protein L5-B|
          Length = 295

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 25/58 (43%), Positives = 36/58 (62%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVER 276
           IK G+ AD +E +YKK HA IR +P   K  K+  K  KR+N  KL+ EQ+K  + ++
Sbjct: 226 IKNGVAADQLEDIYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKKDRVAQK 282

>RL5_CHICK (P22451) 60S ribosomal protein L5|
          Length = 296

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 25/58 (43%), Positives = 33/58 (56%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVER 276
           IK  I  DGME +YKK HAAIR +P   K  K   K  KR N  K++  Q+K  + ++
Sbjct: 226 IKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKREVK-KKRVNSTKMSLAQKKDRVAQK 282

>RL5_MACFA (Q4R5M0) 60S ribosomal protein L5|
          Length = 296

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVER 276
           IK  +  D ME +YKK HAAIR +P   K  K+  K  KR+N  K++  Q+K  + ++
Sbjct: 226 IKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVAQK 282

>RL5_HUMAN (P46777) 60S ribosomal protein L5|
          Length = 296

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVER 276
           IK  +  D ME +YKK HAAIR +P   K  K+  K  KR+N  K++  Q+K  + ++
Sbjct: 226 IKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVAQK 282

>RL5_RAT (P09895) 60S ribosomal protein L5|
          Length = 296

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 23/58 (39%), Positives = 33/58 (56%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVER 276
           IK  +  D ME +YKK HAAIR +P   K  K   K  KR+N  K++  Q+K  + ++
Sbjct: 226 IKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVAQK 282

>RL5_MOUSE (P47962) 60S ribosomal protein L5|
          Length = 296

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 23/58 (39%), Positives = 33/58 (56%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVER 276
           IK  +  D ME +YKK HAAIR +P   K  K   K  KR+N  K++  Q+K  + ++
Sbjct: 226 IKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVAQK 282

>RL5B_SCHPO (O74306) 60S ribosomal protein L5-B|
          Length = 294

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEP---PKTHKRYNPKKLTYEQRKASLVE 279
           I  GIE+D +E +Y + +A IR DP+  KS K+         +Y  +KLT E+RK    E
Sbjct: 227 IADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERK----E 282

Query: 278 RLNA 267
           R NA
Sbjct: 283 RFNA 286

>RL5_YEAST (P26321) 60S ribosomal protein L5 (L1) (YL3) (Ribosomal 5S|
           RNA-binding protein)
          Length = 296

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = -2

Query: 437 IEADGMEALYKKVHAAIRAD----PTIAKSTKEP-PKTHKRYNPKKLTYEQRKASLVERL 273
           I+AD +E +Y   H AIRAD    PT  K TKE      K+Y   KL+ E+R A +  ++
Sbjct: 230 IDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKI 289

Query: 272 NAL 264
            AL
Sbjct: 290 AAL 292

>RL5_DUNSA (O22608) 60S ribosomal protein L5|
          Length = 271

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPK 318
           ++  IE DG+E +YK+VHA IR +P   K  +  P   KR++P+
Sbjct: 225 VENEIEPDGIEDMYKEVHAKIRENPCPPKKERTKPADAKRWSPQ 268

>RL5A_SCHPO (P52822) 60S ribosomal protein L5-A|
          Length = 294

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADPTIAKSTKEP---PKTHKRYNPKKLTYEQRKASLVE 279
           I  GIE+D +E +Y + +A IR DP+  KS K+         ++  +KLT E+RK    E
Sbjct: 227 IADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERK----E 282

Query: 278 RLNA 267
           R NA
Sbjct: 283 RFNA 286

>RL5_ANOGA (O44248) 60S ribosomal protein L5|
          Length = 327

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 449 IKKGIEADGMEALYKKVHAAIRADP 375
           I  GI+AD +E +YK  HA+IR  P
Sbjct: 227 ISLGIKADDIENIYKNAHASIRKIP 251

>RL5_RABIT (P19949) 60S ribosomal protein L5 (Fragments)|
          Length = 101

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 398 HAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVER 276
           HAAIR +P   K  K   K  KR+N  K++  Q+K  + ++
Sbjct: 48  HAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVAQK 87

>RPB9_YEAST (P27999) DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 14.2 kDa polypeptide)
           (B12.6)
          Length = 122

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 389 IRADPTIAKSTKEPPKTHKRYNPKKLTYEQRK 294
           I +DPT+ +S +E PK H R N    + ++RK
Sbjct: 62  IGSDPTLPRSDRECPKCHSRENVFFQSQQRRK 93

>RPB9_CANGA (Q6FS48) DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6)|
          Length = 122

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 389 IRADPTIAKSTKEPPKTHKRYNPKKLTYEQRK 294
           I +DPT+ +S +E PK H R N    + ++RK
Sbjct: 62  IGSDPTLPRSDRECPKCHSRENVFFQSQQRRK 93

>IF2_LACAC (Q5FJN6) Translation initiation factor IF-2|
          Length = 877

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 372 NSKINQGTPKDAQEVQSQEADLRAEKGQSRRAAQ 271
           ++K N G PK A  +Q  +   RAE+GQ  R AQ
Sbjct: 114 DAKSNTGRPKAAALLQQFKQKQRAEEGQLNREAQ 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,439,492
Number of Sequences: 219361
Number of extensions: 1101004
Number of successful extensions: 2990
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2981
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)