ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190270.1| Oryza sativa (japonica cultivar-group), predic... 157 4e-35
2dbj|AK104693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
3dbj|AK065268.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 9e-33
4gb|BT016492.1| Zea mays clone Contig325 mRNA sequence 147 4e-32
5gb|AY109375.1| Zea mays CL457_2 mRNA sequence 147 4e-32
6emb|X64622.1|OS5SRRNMR O.sativa Rrl5 mRNA for 5S ribosomal RNA 143 6e-31
7ref|NM_190269.1| Oryza sativa (japonica cultivar-group), predic... 133 5e-28
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
9dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
10dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
11gb|BT016417.1| Zea mays clone Contig250 mRNA sequence 121 2e-24
12dbj|AB049724.1| Pisum sativum ssa-15 mRNA for putative senescenc... 56 1e-04
13gb|BT014015.1| Lycopersicon esculentum clone 133077F, mRNA sequence 54 4e-04
14dbj|AB001583.1| Solanum melongena mRNA for ribosomal protein L5,... 52 0.002
15gb|DQ228334.1| Solanum tuberosum clone 145F02 unknown mRNA 50 0.006
16emb|X95566.1|PS5SRNA P.sativum 5S rRNA gene 50 0.006
17ref|NM_113448.2| Arabidopsis thaliana ATL5 (A. THALIANA RIBOSOMA... 44 0.39
18gb|BT000411.1| Arabidopsis thaliana putative ribosomal protein (... 44 0.39
19gb|BT008705.1| Arabidopsis thaliana At3g25520 gene, complete cds 44 0.39
20gb|AY136319.1| Arabidopsis thaliana putative ribosomal protein (... 44 0.39
21gb|AY065103.1| Arabidopsis thaliana 60S ribosomal protein L5 (At... 44 0.39
22gb|AY081701.1| Arabidopsis thaliana 60S ribosomal protein L5 (At... 44 0.39
23gb|AY054161.1| Arabidopsis thaliana AT5g39740/MKM21_30 mRNA, com... 44 0.39
24dbj|AK221847.1| Arabidopsis thaliana mRNA for ribosomal protein,... 44 0.39
25gb|AY186611.1| Arabidopsis thaliana ribosomal protein L5 mRNA, c... 44 0.39
26emb|BX823967.1|CNS0A6W1 Arabidopsis thaliana Full-length cDNA Co... 44 0.39
27gb|BT002427.1| Arabidopsis thaliana ribosomal protein, putative ... 44 0.39
28dbj|AB025639.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.39
29emb|CT030195.12| Mouse DNA sequence from clone RP23-191J8 on chr... 44 0.39
30ref|XM_657651.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 1.5
31gb|BT012733.1| Lycopersicon esculentum clone 113662F, mRNA sequence 42 1.5
32emb|BX649413.8| Mouse DNA sequence from clone RP23-193P21 on chr... 42 1.5
33gb|AY087197.1| Arabidopsis thaliana clone 32753 mRNA, complete s... 42 1.5
34ref|XM_638845.1| Dictyostelium discoideum hypothetical protein (... 40 6.1
35gb|BC049636.1| Mus musculus mitchondrial ribosomal protein S7, m... 40 6.1
36ref|NM_025305.1| Mus musculus mitchondrial ribosomal protein S7 ... 40 6.1
37gb|AC154903.4| Mus musculus BAC clone RP23-414E24 from chromosom... 40 6.1
38emb|Z81045.1|CEC36F7 Caenorhabditis elegans Cosmid C36F7, comple... 40 6.1
39gb|AC124436.5| Mus musculus BAC clone RP24-252O24 from chromosom... 40 6.1
40gb|AC126271.4| Mus musculus BAC clone RP23-237H9 from chromosome... 40 6.1
41gb|AC123042.2| Mus musculus BAC clone RP24-545O17 from 10, compl... 40 6.1
42gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume ... 40 6.1
43gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.1
44gb|AC130456.2| Homo sapiens chromosome 16 clone CTA-363E6, compl... 40 6.1
45emb|AL121776.19|HSJ1050K3 Human DNA sequence from clone RP5-1050... 40 6.1
46dbj|AK126270.1| Homo sapiens cDNA FLJ44282 fis, clone TRACH2003516 40 6.1
47dbj|AK162024.1| Mus musculus 12 days embryo female mullerian duc... 40 6.1
48dbj|AK009251.1| Mus musculus adult male tongue cDNA, RIKEN full-... 40 6.1
49ref|NM_060132.2| Caenorhabditis elegans IRoquois subclass of hom... 40 6.1
50gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041... 40 6.1
51gb|AC084452.1|AC084452 Caenorhabditis briggsae cosmid CB024D21, ... 40 6.1
52gb|U91321.1|HUU91321 Human Chromosome 16 BAC clone CIT987SK-A-36... 40 6.1
53gb|DQ203519.1| Uncultured bacterium clone MedHO1-20-2-C3 predict... 40 6.1
54gb|AF051242.1|AF051242 Picea mariana probable 60S ribosomal prot... 40 6.1
55emb|AL645470.20| Mouse DNA sequence from clone RP23-392H19 on ch... 40 6.1
56gb|AC147634.3| Mus musculus BAC clone RP23-305G22 from 10, compl... 40 6.1
57gb|AC141564.4| Mus musculus BAC clone RP23-361B14 from 10, compl... 40 6.1 
>ref|NM_190270.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 906

 Score =  157 bits (79), Expect = 4e-35
 Identities = 175/207 (84%)
 Strand = Plus / Minus

                                                                       
Query: 242 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggcctttctct 301
           ||||||||||| |||| |||||||| ||||| |  |  || || ||||||||||| ||||
Sbjct: 877 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 818

                                                                       
Query: 302 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttgggggttccttggttg 361
           | |||||||| ||||||||| | ||||| |||||||| |||   ||    | ||||||||
Sbjct: 817 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 758

                                                                       
Query: 362 attttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacagtgcttcca 421
           |||| || || |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 757 atttggccatggtaggatcagcacggatggcagcatggaccttcttgtacagtgcttcca 698

                                      
Query: 422 tgccatcagcctcgattcccttcttga 448
           |||||||||| || |||||||||||||
Sbjct: 697 tgccatcagcatcaattcccttcttga 671
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>dbj|AK104693.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H05, full
           insert sequence
          Length = 1219

 Score =  157 bits (79), Expect = 4e-35
 Identities = 175/207 (84%)
 Strand = Plus / Minus

                                                                       
Query: 242 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggcctttctct 301
           ||||||||||| |||| |||||||| ||||| |  |  || || ||||||||||| ||||
Sbjct: 973 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 914

                                                                       
Query: 302 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttgggggttccttggttg 361
           | |||||||| ||||||||| | ||||| |||||||| |||   ||    | ||||||||
Sbjct: 913 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 854

                                                                       
Query: 362 attttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacagtgcttcca 421
           |||| || || |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 853 atttggccatggtaggatcagcacggatggcagcatggaccttcttgtacagtgcttcca 794

                                      
Query: 422 tgccatcagcctcgattcccttcttga 448
           |||||||||| || |||||||||||||
Sbjct: 793 tgccatcagcatcaattcccttcttga 767
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>dbj|AK065268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K21, full
           insert sequence
          Length = 1219

 Score =  149 bits (75), Expect = 9e-33
 Identities = 141/163 (86%)
 Strand = Plus / Minus

                                                                       
Query: 286 agactggcctttctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtcttt 345
           ||||||||||| ||||| |||||||| ||||||||| | ||||| |||||||| |||   
Sbjct: 930 agactggccttcctctgttcgtaggttagcttcttgaggttgtatctcttgtgggtcgcc 871

                                                                       
Query: 346 gggggttccttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttc 405
           ||    | |||||||||||| || || |||||||||||||| ||||||||||| ||||||
Sbjct: 870 ggttccttcttggttgatttggccatggtaggatcagcacggatggcagcatggaccttc 811

                                                      
Query: 406 ttgtacagtgcttccatgccatcagcctcgattcccttcttga 448
           |||||||||||||||||||||||||| || |||||||||||||
Sbjct: 810 ttgtacagtgcttccatgccatcagcatcaattcccttcttga 768
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>gb|BT016492.1| Zea mays clone Contig325 mRNA sequence
          Length = 1365

 Score =  147 bits (74), Expect = 4e-32
 Identities = 140/162 (86%)
 Strand = Plus / Minus

                                                                       
Query: 285 gagactggcctttctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtctt 344
           |||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||  |||
Sbjct: 902 gagactggccttcctctgctcgtatgtcagtttcttggggttgtacctcttgtgctcctt 843

                                                                       
Query: 345 tgggggttccttggttgattttgctattgtaggatcagcacgaatggcagcatgaacctt 404
           ||| || | ||||||||| ||  | |  | |||||||||||| ||||||||||| |||||
Sbjct: 842 tggtggctgcttggttgacttgaccacagaaggatcagcacggatggcagcatggacctt 783

                                                     
Query: 405 cttgtacagtgcttccatgccatcagcctcgattcccttctt 446
           ||||||||| ||||||||| | |||||||| |||||||||||
Sbjct: 782 cttgtacagagcttccatgtcgtcagcctcaattcccttctt 741
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>gb|AY109375.1| Zea mays CL457_2 mRNA sequence
          Length = 1397

 Score =  147 bits (74), Expect = 4e-32
 Identities = 137/158 (86%)
 Strand = Plus / Minus

                                                                       
Query: 289 ctggcctttctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggg 348
           |||||||| |||||||| || |||||||||||||| ||||||||||| |||  |||||| 
Sbjct: 914 ctggccttcctctgctcatatgtcagcttcttggggttgtacctcttatgctcctttggt 855

                                                                       
Query: 349 ggttccttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttg 408
           || | ||||||||| ||  | || | |||||||||||| ||||||||||| |||||||||
Sbjct: 854 ggctgcttggttgacttgacaatggaaggatcagcacggatggcagcatggaccttcttg 795

                                                 
Query: 409 tacagtgcttccatgccatcagcctcgattcccttctt 446
           ||||| ||||||||| |||||||||| |||||||||||
Sbjct: 794 tacagagcttccatgtcatcagcctcaattcccttctt 757
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>emb|X64622.1|OS5SRRNMR O.sativa Rrl5 mRNA for 5S ribosomal RNA
          Length = 1114

 Score =  143 bits (72), Expect = 6e-31
 Identities = 175/208 (84%), Gaps = 1/208 (0%)
 Strand = Plus / Minus

                                                                       
Query: 242 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggcctttctct 301
           ||||||||||| |||| |||||||| ||||| |  |  || || ||||||||||| ||||
Sbjct: 887 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 828

                                                                       
Query: 302 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttgggggttccttggttg 361
           | |||||||| ||||||||| | ||||| |||||||| |||   ||    | ||||||||
Sbjct: 827 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 768

                                                                       
Query: 362 attttgctattgtagg-atcagcacgaatggcagcatgaaccttcttgtacagtgcttcc 420
           |||| || || ||||| ||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 767 atttggccatggtagggatcagcacggatggcagcatggaccttcttgtacagtgcttcc 708

                                       
Query: 421 atgccatcagcctcgattcccttcttga 448
           ||||||||||| || |||||||||||||
Sbjct: 707 atgccatcagcatcaattcccttcttga 680
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>ref|NM_190269.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 915

 Score =  133 bits (67), Expect = 5e-28
 Identities = 172/207 (83%)
 Strand = Plus / Minus

                                                                       
Query: 242 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggcctttctct 301
           ||||||||||| | || |||||||| ||||| |  |  || |||||||||||||| ||||
Sbjct: 886 catcagcaccagcggaggagttgagagcattcaatctttcgacgagactggccttcctct 827

                                                                       
Query: 302 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttgggggttccttggttg 361
           |||||||||||||||||||| | ||||| |||||||| ||    ||    | |||||| |
Sbjct: 826 gctcgtaggtcagcttcttgaggttgtatctcttgtgggtagccggttccttcttggtcg 767

                                                                       
Query: 362 attttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacagtgcttcca 421
           |||| || || |||||||| || || ||||||||||| |||||||||||||||| |||||
Sbjct: 766 atttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacagtgattcca 707

                                      
Query: 422 tgccatcagcctcgattcccttcttga 448
           |||||||||| || |||||||||||||
Sbjct: 706 tgccatcagcgtcaattcccttcttga 680
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                            
Query: 354      cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 413
                |||||||||||| || || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 38969192 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 38969133

                                                   
Query: 414      tgcttccatgccatcagcctcgattcccttcttga 448
                |||||||||||||||||| || |||||||||||||
Sbjct: 38969132 tgcttccatgccatcagcatcaattcccttcttga 38969098



 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                            
Query: 354      cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 413
                |||||| ||||| || || |||||||| || || ||||||||||| ||||||||||||||
Sbjct: 38963860 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 38963801

                                                   
Query: 414      tgcttccatgccatcagcctcgattcccttcttga 448
                || ||||||||||||||| || |||||||||||||
Sbjct: 38963800 tgattccatgccatcagcgtcaattcccttcttga 38963766



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                            
Query: 242      catcagcaccaccagatgagttgagggcattgagccgctctacgagactggcctttctct 301
                ||||||||||| | || |||||||| ||||| |  |  || |||||||||||||| ||||
Sbjct: 38964058 catcagcaccagcggaggagttgagagcattcaatctttcgacgagactggccttcctct 38963999

                                    
Query: 302      gctcgtaggtcagcttcttg 321
                ||||||||||||||||||||
Sbjct: 38963998 gctcgtaggtcagcttcttg 38963979



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                            
Query: 242      catcagcaccaccagatgagttgagggcattgagccgctctacgagactggcctttctct 301
                ||||||||||| |||| |||||||| ||||| |  |  || || ||||||||||| ||||
Sbjct: 38969388 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 38969329

                                    
Query: 302      gctcgtaggtcagcttcttg 321
                | |||||||| |||||||||
Sbjct: 38969328 gttcgtaggttagcttcttg 38969309
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>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0674H09
          Length = 142955

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                         
Query: 354   cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 413
             |||||||||||| || || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 42825 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 42766

                                                
Query: 414   tgcttccatgccatcagcctcgattcccttcttga 448
             |||||||||||||||||| || |||||||||||||
Sbjct: 42765 tgcttccatgccatcagcatcaattcccttcttga 42731



 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                         
Query: 354   cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 413
             |||||| ||||| || || |||||||| || || ||||||||||| ||||||||||||||
Sbjct: 37493 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 37434

                                                
Query: 414   tgcttccatgccatcagcctcgattcccttcttga 448
             || ||||||||||||||| || |||||||||||||
Sbjct: 37433 tgattccatgccatcagcgtcaattcccttcttga 37399



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                         
Query: 242   catcagcaccaccagatgagttgagggcattgagccgctctacgagactggcctttctct 301
             ||||||||||| | || |||||||| ||||| |  |  || |||||||||||||| ||||
Sbjct: 37691 catcagcaccagcggaggagttgagagcattcaatctttcgacgagactggccttcctct 37632

                                 
Query: 302   gctcgtaggtcagcttcttg 321
             ||||||||||||||||||||
Sbjct: 37631 gctcgtaggtcagcttcttg 37612



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                         
Query: 242   catcagcaccaccagatgagttgagggcattgagccgctctacgagactggcctttctct 301
             ||||||||||| |||| |||||||| ||||| |  |  || || ||||||||||| ||||
Sbjct: 43021 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 42962

                                 
Query: 302   gctcgtaggtcagcttcttg 321
             | |||||||| |||||||||
Sbjct: 42961 gttcgtaggttagcttcttg 42942
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>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0696G06
          Length = 142571

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                          
Query: 354    cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 413
              |||||||||||| || || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 133978 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 133919

                                                 
Query: 414    tgcttccatgccatcagcctcgattcccttcttga 448
              |||||||||||||||||| || |||||||||||||
Sbjct: 133918 tgcttccatgccatcagcatcaattcccttcttga 133884



 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                          
Query: 354    cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 413
              |||||| ||||| || || |||||||| || || ||||||||||| ||||||||||||||
Sbjct: 128646 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 128587

                                                 
Query: 414    tgcttccatgccatcagcctcgattcccttcttga 448
              || ||||||||||||||| || |||||||||||||
Sbjct: 128586 tgattccatgccatcagcgtcaattcccttcttga 128552



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                          
Query: 242    catcagcaccaccagatgagttgagggcattgagccgctctacgagactggcctttctct 301
              ||||||||||| | || |||||||| ||||| |  |  || |||||||||||||| ||||
Sbjct: 128844 catcagcaccagcggaggagttgagagcattcaatctttcgacgagactggccttcctct 128785

                                  
Query: 302    gctcgtaggtcagcttcttg 321
              ||||||||||||||||||||
Sbjct: 128784 gctcgtaggtcagcttcttg 128765



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                          
Query: 242    catcagcaccaccagatgagttgagggcattgagccgctctacgagactggcctttctct 301
              ||||||||||| |||| |||||||| ||||| |  |  || || ||||||||||| ||||
Sbjct: 134174 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 134115

                                  
Query: 302    gctcgtaggtcagcttcttg 321
              | |||||||| |||||||||
Sbjct: 134114 gttcgtaggttagcttcttg 134095
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>gb|BT016417.1| Zea mays clone Contig250 mRNA sequence
          Length = 1212

 Score =  121 bits (61), Expect = 2e-24
 Identities = 169/205 (82%)
 Strand = Plus / Minus

                                                                       
Query: 242 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggcctttctct 301
           ||||||||||||| || ||||||||    |||||||  || | ||| |||||||| ||||
Sbjct: 960 catcagcaccaccggaggagttgagttggttgagcctttcaatgaggctggccttcctct 901

                                                                       
Query: 302 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttgggggttccttggttg 361
           |||| || |||||||||||||| ||||||||||| |||  |||||| || | ||||||||
Sbjct: 900 gctcatatgtcagcttcttggggttgtacctcttatgctcctttggtggctgcttggttg 841

                                                                       
Query: 362 attttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacagtgcttcca 421
           | ||  | || | |||||| ||||| ||||||||||| |||||||||||||| ||||| |
Sbjct: 840 acttaacaatggaaggatcggcacggatggcagcatggaccttcttgtacagcgcttcta 781

                                    
Query: 422 tgccatcagcctcgattcccttctt 446
           |  |||||||||| | |||||||||
Sbjct: 780 tttcatcagcctcaactcccttctt 756
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>dbj|AB049724.1| Pisum sativum ssa-15 mRNA for putative senescence-associated
           protein, complete cds
          Length = 1100

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 382 gcacgaatggcagcatgaaccttcttgtacagtgcttccatgccatcagcctcgattccc 441
           |||||||| |||||||||||||||||||| ||| | || || |||||||| || || || 
Sbjct: 805 gcacgaattgcagcatgaaccttcttgtaaagttcctcaattccatcagcttctatccct 746

                   
Query: 442 ttcttgat 449
           ||||||||
Sbjct: 745 ttcttgat 738
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>gb|BT014015.1| Lycopersicon esculentum clone 133077F, mRNA sequence
          Length = 1274

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 382 gcacgaatggcagcatgaaccttcttgtaca 412
           ||||| |||||||||||||||||||||||||
Sbjct: 854 gcacgtatggcagcatgaaccttcttgtaca 824



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 292 gcctttctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtctt 344
           |||||||| | ||| || |||||||||||  ||||||||||||||||| ||||
Sbjct: 944 gcctttctttcctcataagtcagcttcttcagattgtacctcttgtgcttctt 892
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>dbj|AB001583.1| Solanum melongena mRNA for ribosomal protein L5, partial cds
          Length = 399

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 307 taggtcagcttcttgggattgtacctcttgtgcgtctttgggggtt 352
           ||||||||||||||  | |||||||||||||| ||||| |||||||
Sbjct: 276 taggtcagcttcttaaggttgtacctcttgtgtgtcttggggggtt 231



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 388 atggcagcatgaaccttcttgtaca 412
           |||||||| ||||||||||||||||
Sbjct: 195 atggcagcgtgaaccttcttgtaca 171
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>gb|DQ228334.1| Solanum tuberosum clone 145F02 unknown mRNA
          Length = 1114

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 388 atggcagcatgaaccttcttgtaca 412
           |||||||||||||||||||||||||
Sbjct: 771 atggcagcatgaaccttcttgtaca 747
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>emb|X95566.1|PS5SRNA P.sativum 5S rRNA gene
          Length = 1115

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 382 gcacgaatggcagcatgaaccttcttgta 410
           |||||||| ||||||||||||||||||||
Sbjct: 758 gcacgaattgcagcatgaaccttcttgta 730
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>ref|NM_113448.2| Arabidopsis thaliana ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5);
           structural constituent of ribosome AT3G25520 (ATL5)
           mRNA, complete cds
          Length = 1254

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 379 tcagcacgaatggcagcatgaaccttcttgtaca 412
           ||||||||||| || || ||||||||||||||||
Sbjct: 808 tcagcacgaatagctgcgtgaaccttcttgtaca 775
to top
>gb|BT000411.1| Arabidopsis thaliana putative ribosomal protein (At3g25520) mRNA,
           complete cds
          Length = 969

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 379 tcagcacgaatggcagcatgaaccttcttgtaca 412
           ||||||||||| || || ||||||||||||||||
Sbjct: 746 tcagcacgaatagctgcgtgaaccttcttgtaca 713
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>gb|BT008705.1| Arabidopsis thaliana At3g25520 gene, complete cds
          Length = 906

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 379 tcagcacgaatggcagcatgaaccttcttgtaca 412
           ||||||||||| || || ||||||||||||||||
Sbjct: 746 tcagcacgaatagctgcgtgaaccttcttgtaca 713
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>gb|AY136319.1| Arabidopsis thaliana putative ribosomal protein (At3g25520) mRNA,
           complete cds
          Length = 1161

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 379 tcagcacgaatggcagcatgaaccttcttgtaca 412
           ||||||||||| || || ||||||||||||||||
Sbjct: 805 tcagcacgaatagctgcgtgaaccttcttgtaca 772
to top
>gb|AY065103.1| Arabidopsis thaliana 60S ribosomal protein L5 (At3g25550) mRNA,
           complete cds
          Length = 1151

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 379 tcagcacgaatggcagcatgaaccttcttgtaca 412
           ||||||||||| || || ||||||||||||||||
Sbjct: 803 tcagcacgaatagctgcgtgaaccttcttgtaca 770
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>gb|AY081701.1| Arabidopsis thaliana 60S ribosomal protein L5 (At3g25550) mRNA,
           complete cds
          Length = 925

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 379 tcagcacgaatggcagcatgaaccttcttgtaca 412
           ||||||||||| || || ||||||||||||||||
Sbjct: 746 tcagcacgaatagctgcgtgaaccttcttgtaca 713
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>gb|AY054161.1| Arabidopsis thaliana AT5g39740/MKM21_30 mRNA, complete cds
          Length = 1108

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 379 tcagcacgaatggcagcatgaaccttcttgtaca 412
           ||||||||||| || || ||||||||||||||||
Sbjct: 793 tcagcacgaatagctgcgtgaaccttcttgtaca 760
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>dbj|AK221847.1| Arabidopsis thaliana mRNA for ribosomal protein, complete cds,
           clone: RAFL22-05-O03
          Length = 517

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 379 tcagcacgaatggcagcatgaaccttcttgtaca 412
           ||||||||||| || || ||||||||||||||||
Sbjct: 177 tcagcacgaatagctgcgtgaaccttcttgtaca 144
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>gb|AY186611.1| Arabidopsis thaliana ribosomal protein L5 mRNA, complete cds
          Length = 906

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 379 tcagcacgaatggcagcatgaaccttcttgtaca 412
           ||||||||||| || || ||||||||||||||||
Sbjct: 746 tcagcacgaatagctgcgtgaaccttcttgtaca 713
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>emb|BX823967.1|CNS0A6W1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH10ZG11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1076

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 379 tcagcacgaatggcagcatgaaccttcttgtaca 412
           ||||||||||| || || ||||||||||||||||
Sbjct: 778 tcagcacgaatagctgcgtgaaccttcttgtaca 745
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>gb|BT002427.1| Arabidopsis thaliana ribosomal protein, putative (At3g25520) mRNA,
           complete cds
          Length = 1117

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 379 tcagcacgaatggcagcatgaaccttcttgtaca 412
           ||||||||||| || || ||||||||||||||||
Sbjct: 803 tcagcacgaatagctgcgtgaaccttcttgtaca 770
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>dbj|AB025639.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MWL2
          Length = 84896

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 379   tcagcacgaatggcagcatgaaccttcttgtaca 412
             ||||||||||| || || ||||||||||||||||
Sbjct: 56590 tcagcacgaatagctgcgtgaaccttcttgtaca 56623
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>emb|CT030195.12| Mouse DNA sequence from clone RP23-191J8 on chromosome 13, complete
              sequence
          Length = 219800

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 62     cagaacggtactcaaaaccaagggggcagg 91
              ||||| || |||||||||||||||||||||
Sbjct: 138517 cagaatgggactcaaaaccaagggggcagg 138546
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>ref|XM_657651.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5139.2), mRNA
          Length = 3624

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 215  actctcattcatcgtcgtcttcatc 239
            ||||||||||||| |||||||||||
Sbjct: 3164 actctcattcatcttcgtcttcatc 3188
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>gb|BT012733.1| Lycopersicon esculentum clone 113662F, mRNA sequence
          Length = 1161

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 388 atggcagcatgaaccttcttgtaca 412
           ||||||||||||||||| |||||||
Sbjct: 794 atggcagcatgaacctttttgtaca 770
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>emb|BX649413.8| Mouse DNA sequence from clone RP23-193P21 on chromosome 4 Contains the
             5' end of the Dbccr1 gene for deleted in bladder cancer 1,
             complete sequence
          Length = 186197

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    taagataatccagaactccag 64
             |||||||||||||||||||||
Sbjct: 81236 taagataatccagaactccag 81216
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>gb|AY087197.1| Arabidopsis thaliana clone 32753 mRNA, complete sequence
          Length = 1248

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 380 cagcacgaatggcagcatgaaccttcttgtaca 412
           |||||||||| || || ||||||||||||||||
Sbjct: 807 cagcacgaatagctgcgtgaaccttcttgtaca 775
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>ref|XM_638845.1| Dictyostelium discoideum hypothetical protein (DDB0217483), partial
            mRNA
          Length = 4395

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 223  tcatcgtcgtcttcatcgacatca 246
            ||||| ||||||||||||||||||
Sbjct: 1936 tcatcatcgtcttcatcgacatca 1959
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>gb|BC049636.1| Mus musculus mitchondrial ribosomal protein S7, mRNA (cDNA clone
            MGC:58388 IMAGE:6532964), complete cds
          Length = 1355

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 113  aacttgagcaaaaatgcctctcac 136
            ||||||||||||| ||||||||||
Sbjct: 1121 aacttgagcaaaactgcctctcac 1144
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>ref|NM_025305.1| Mus musculus mitchondrial ribosomal protein S7 (Mrps7), mRNA
          Length = 1355

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 113  aacttgagcaaaaatgcctctcac 136
            ||||||||||||| ||||||||||
Sbjct: 1121 aacttgagcaaaactgcctctcac 1144
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>gb|AC154903.4| Mus musculus BAC clone RP23-414E24 from chromosome 12, complete sequence
          Length = 201338

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    gcgtctttgggggttccttg 357
              ||||||||||||||||||||
Sbjct: 117768 gcgtctttgggggttccttg 117749
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>emb|Z81045.1|CEC36F7 Caenorhabditis elegans Cosmid C36F7, complete sequence
          Length = 39211

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 223  tcatcgtcgtcttcatcgacatca 246
            |||||||||||||||||| |||||
Sbjct: 1300 tcatcgtcgtcttcatcgtcatca 1323
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>gb|AC124436.5| Mus musculus BAC clone RP24-252O24 from chromosome 10, complete
             sequence
          Length = 174497

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aaaccctgaagcaatgtcaa 21
             ||||||||||||||||||||
Sbjct: 30387 aaaccctgaagcaatgtcaa 30368
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>gb|AC126271.4| Mus musculus BAC clone RP23-237H9 from chromosome 5, complete sequence
          Length = 194736

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    gcgtctttgggggttccttg 357
              ||||||||||||||||||||
Sbjct: 126205 gcgtctttgggggttccttg 126186
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>gb|AC123042.2| Mus musculus BAC clone RP24-545O17 from 10, complete sequence
          Length = 177899

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aaaccctgaagcaatgtcaaaatg 25
             |||||| |||||||||||||||||
Sbjct: 57136 aaacccagaagcaatgtcaaaatg 57159
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>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1)
             gene, complete cds
          Length = 169976

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   gttccttggttgattttgct 369
             ||||||||||||||||||||
Sbjct: 35316 gttccttggttgattttgct 35297
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 270     attgagccgctctacgagac 289
               ||||||||||||||||||||
Sbjct: 4242294 attgagccgctctacgagac 4242313
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>gb|AC130456.2| Homo sapiens chromosome 16 clone CTA-363E6, complete sequence
          Length = 220579

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    aagcatgaagacagcactat 196
              ||||||||||||||||||||
Sbjct: 133716 aagcatgaagacagcactat 133697
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>emb|AL121776.19|HSJ1050K3 Human DNA sequence from clone RP5-1050K3 on chromosome 20 Contains part
             of the EYA2 gene for eyes absent homolog 2 (Drosophila), a
             glyceraldehyde 3-phosphate dehydrogenase (GAPDH)
             pseudogene and an RPL27A (ribosomal protein L27A)
             pseudogene, complete sequence
          Length = 143981

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 42    tttaagataatccagaactccaga 65
             |||||||||| |||||||||||||
Sbjct: 56872 tttaagataaaccagaactccaga 56849
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>dbj|AK126270.1| Homo sapiens cDNA FLJ44282 fis, clone TRACH2003516
          Length = 2555

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  aagcatgaagacagcactat 196
            ||||||||||||||||||||
Sbjct: 1586 aagcatgaagacagcactat 1567
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>dbj|AK162024.1| Mus musculus 12 days embryo female mullerian duct includes
            surrounding region cDNA, RIKEN full-length enriched
            library, clone:6820413L12 product:mitchondrial ribosomal
            protein S7, full insert sequence
          Length = 1715

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 113  aacttgagcaaaaatgcctctcac 136
            ||||||||||||| ||||||||||
Sbjct: 1100 aacttgagcaaaactgcctctcac 1123
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>dbj|AK009251.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
            library, clone:2310009G03 product:mitchondrial ribosomal
            protein S7, full insert sequence
          Length = 1288

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 113  aacttgagcaaaaatgcctctcac 136
            ||||||||||||| ||||||||||
Sbjct: 1086 aacttgagcaaaactgcctctcac 1109
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>ref|NM_060132.2| Caenorhabditis elegans IRoquois subclass of homeoboX family member
           (irx-1) (irx-1) mRNA, complete cds
          Length = 1150

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 223 tcatcgtcgtcttcatcgacatca 246
           |||||||||||||||||| |||||
Sbjct: 675 tcatcgtcgtcttcatcgtcatca 652
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>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4,
              complete sequence
          Length = 333321

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 223    tcatcgtcgtcttcatcgacatca 246
              ||||| ||||||||||||||||||
Sbjct: 171756 tcatcatcgtcttcatcgacatca 171779
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>gb|AC084452.1|AC084452 Caenorhabditis briggsae cosmid CB024D21, complete sequence
          Length = 93590

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   cgtcgtcttcatcgacatca 246
             ||||||||||||||||||||
Sbjct: 76007 cgtcgtcttcatcgacatca 76026
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>gb|U91321.1|HUU91321 Human Chromosome 16 BAC clone CIT987SK-A-363E6, complete sequence
          Length = 220633

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    aagcatgaagacagcactat 196
              ||||||||||||||||||||
Sbjct: 133766 aagcatgaagacagcactat 133747
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>gb|DQ203519.1| Uncultured bacterium clone MedHO1-20-2-C3 predicted
          proteorhodopsin gene, partial cds
          Length = 324

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 42 tttaagataatccagaactc 61
          ||||||||||||||||||||
Sbjct: 62 tttaagataatccagaactc 43
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>gb|AF051242.1|AF051242 Picea mariana probable 60S ribosomal protein L5 (Sb58) mRNA,
           partial cds
          Length = 556

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 385 cgaatggcagcatgaaccttcttgtaca 412
           |||||||||||||| || ||||||||||
Sbjct: 118 cgaatggcagcatgcactttcttgtaca 91
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>emb|AL645470.20| Mouse DNA sequence from clone RP23-392H19 on chromosome 11, complete
             sequence
          Length = 198031

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 113   aacttgagcaaaaatgcctctcac 136
             ||||||||||||| ||||||||||
Sbjct: 17403 aacttgagcaaaactgcctctcac 17380
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>gb|AC147634.3| Mus musculus BAC clone RP23-305G22 from 10, complete sequence
          Length = 207157

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     aaaccctgaagcaatgtcaa 21
             ||||||||||||||||||||
Sbjct: 73655 aaaccctgaagcaatgtcaa 73674
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>gb|AC141564.4| Mus musculus BAC clone RP23-361B14 from 10, complete sequence
          Length = 210784

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      aaaccctgaagcaatgtcaaaatg 25
              |||||| |||||||||||||||||
Sbjct: 190292 aaacccagaagcaatgtcaaaatg 190315


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,846,973
Number of Sequences: 3902068
Number of extensions: 3846973
Number of successful extensions: 76446
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76277
Number of HSP's gapped (non-prelim): 156
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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