ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart24e09 |
|---|---|
| Clone Library Name | barley_pub |
>OMP19_RHILO (Q98EC1) Outer membrane lipoprotein omp19 homolog precursor| Length = 179 Score = 32.0 bits (71), Expect = 0.37 Identities = 19/60 (31%), Positives = 23/60 (38%) Frame = +2 Query: 200 TSHEAAMIKQEPRTXXXXXXXXXXXGQLPAGGGQVKSRPPKSSHAPAGVSAPSQPPDGAA 379 TS ++M Q+P QLP + P K APA S PPDG A Sbjct: 23 TSRFSSMDDQQPAPLQPAPAGQVTSNQLPPPASPGSTDPSKFPTAPANTQVASLPPDGQA 82
>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Activated in prostate cancer protein) Length = 2839 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Frame = -2 Query: 386 TGSRRRRVAVMGRSPPPARGTTWAASTSPGHRLPATDQRHHVSQHVAGAFE-----APVL 222 T RRVA + + P A G T A + PG L + +QR + + A E AP Sbjct: 1313 TPHNTRRVAALRGAGPGAEGMTPAGAVLPGDPLTSQEQRQGAPGNHSKALEMTGIHAPES 1372 Query: 221 SSQPHVM 201 S +P ++ Sbjct: 1373 SQEPSLL 1379
>BIND_LYTVA (P23117) Bindin precursor| Length = 462 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +2 Query: 284 PAGGGQVKSRPPKSSHAPAGVSAP 355 P GGG +PP+ ++AP G+ P Sbjct: 257 PMGGGNYPGQPPQQNYAPQGMGGP 280
>TLL1_HUMAN (O43897) Tolloid-like protein 1 precursor (EC 3.4.24.-)| Length = 1013 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = -2 Query: 341 PPARGTTWAASTSPGHRLPATDQRHHVSQHVAGAFE 234 P + TW S +PGHR+ + QH A++ Sbjct: 795 PSRKECTWEISATPGHRIKLAFSEFEIEQHQECAYD 830
>TLL1_XENLA (Q8JI28) Tolloid-like protein 1 precursor (EC 3.4.24.-) (Xenopus| tolloid-like protein 1) (Metalloprotease xolloid-like) (Xlr) Length = 1007 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = -2 Query: 341 PPARGTTWAASTSPGHRLPATDQRHHVSQHVAGAFE 234 P + TW S +PGHR+ + + QH A++ Sbjct: 790 PSRKECTWEISATPGHRVKLSFSEFEIEQHQECAYD 825
>TLL2_HUMAN (Q9Y6L7) Tolloid-like protein 2 precursor (EC 3.4.24.-)| Length = 1015 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -2 Query: 341 PPARGTTWAASTSPGHRLPATDQRHHVSQHVAGAFE 234 P R TW S++ GHR+ T + QH A++ Sbjct: 797 PSRRECTWNISSTAGHRVKLTFNEFEIEQHQECAYD 832
>TLL1_MOUSE (Q62381) Tolloid-like protein 1 precursor (EC 3.4.24.-) (mTll)| Length = 1013 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = -2 Query: 341 PPARGTTWAASTSPGHRLPATDQRHHVSQHVAGAFE 234 P + TW S PGHR+ V QH A++ Sbjct: 795 PSRKECTWVISAIPGHRITLAFNEFEVEQHQECAYD 830
>NAS39_CAEEL (Q20176) Zinc metalloproteinase nas-39 precursor (EC 3.4.24.21)| (Nematode astacin 39) Length = 951 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = -2 Query: 341 PPARGTTWAASTSPGHRLPATDQRHHVSQHVAGAFEA 231 P + +W T+PGHRL T V +H ++A Sbjct: 713 PKGQNCSWHFVTTPGHRLMLTFSSFQVEEHAQCKYDA 749
>KLF14_HUMAN (Q8TD94) Krueppel-like factor 14 (Transcription factor BTEB5)| (Basic transcription element-binding protein 5) (BTE-binding protein 5) Length = 323 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/33 (48%), Positives = 17/33 (51%) Frame = +2 Query: 284 PAGGGQVKSRPPKSSHAPAGVSAPSQPPDGAAS 382 PA G P SS APA SAP+ P AAS Sbjct: 131 PASGAAAVCAPESSSDAPAVPSAPAAPGAPAAS 163
>H6ST2_BRARE (Q800H9) Heparan-sulfate 6-O-sulfotransferase 2 (EC 2.8.2.-)| (HS6ST-2) Length = 468 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 10/83 (12%) Frame = +3 Query: 66 GLSSTTKYLTTCAC*PHPNYMKN-------LTSNGSSY---VIRHQVWRKMSSWSHHMRL 215 GL + LT C P++M N +T + + Y ++R VWR +S W H R Sbjct: 158 GLHADWTELTNCV----PSFMSNRESQERRMTPSRNYYYITILRDPVWRYLSEWRHVQRG 213 Query: 216 R**NRSLERAGDMLTDMMTLVSC 284 S L + L SC Sbjct: 214 ATWKASKHMCDGRLPTLTELPSC 236
>GGT4_RAT (Q99MZ4) Gamma-glutamyltransferase 4 precursor (EC 2.3.2.2)| (Gamma-glutamyltranspeptidase 4) (Gamma-glutamyltransferase-like 3) [Contains: Gamma-glutamyltransferase 4 heavy chain; Gamma-glutamyltransferase 4 light chain] Length = 662 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = -1 Query: 354 GALTPAGAWDDLGGLDFTWPPPAGN*PASSCQSACRRRVRGSCFII 217 G LTP+G + LDF+WP N A S +++ + R F++ Sbjct: 499 GLLTPSGILLNSQMLDFSWPNRTANHSAPSLENSVQPGKRPLSFLL 544
>GGT4_MOUSE (Q99JP7) Gamma-glutamyltransferase 4 precursor (EC 2.3.2.2)| (Gamma-glutamyltranspeptidase 4) (Gamma-glutamyltransferase-like 3) [Contains: Gamma-glutamyltransferase 4 heavy chain; Gamma-glutamyltransferase 4 light chain] Length = 662 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = -1 Query: 354 GALTPAGAWDDLGGLDFTWPPPAGN*PASSCQSACRRRVRGSCFII 217 G LTP+G + LDF+WP N A S +++ + R F++ Sbjct: 499 GLLTPSGILLNSQMLDFSWPNRTANHSAPSLENSVQPGKRPLSFLL 544
>TLL2_MOUSE (Q9WVM6) Tolloid-like protein 2 precursor (EC 3.4.24.-)| Length = 1012 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = -2 Query: 341 PPARGTTWAASTSPGHRLPATDQRHHVSQHVAGAFE 234 P + TW S++ GHR+ T + QH A++ Sbjct: 794 PSRKECTWNISSTAGHRVKITFSEFEIEQHQECAYD 829
>AA2DA_BRARE (Q8JG70) Alpha-2Da adrenergic receptor (Alpha-2Da adrenoceptor)| (Alpha-2Da adrenoreceptor) (Alpha(2Da)AR) Length = 408 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = -2 Query: 380 SRRRRVAVMGRSPPPARGTTWAASTSPGHRLPATDQRHHVSQ 255 S+RRRV R P + +WAA PG R + V+Q Sbjct: 282 SKRRRVEGERRGPQRSCRVSWAAHQEPGSRQQQLASKSKVAQ 323
>DOT1L_DROME (Q8INR6) Histone-lysine N-methyltransferase, H3 lysine-79 specific| (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (Protein grappa) (DOT1-like protein) (dDOT1L) Length = 1848 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = -2 Query: 302 PGHRLPATDQRHHVSQHVAGAFEAPVLSS 216 P HRLP Q H QH F+AP S Sbjct: 1247 PQHRLPQHVQHQHPHQHHPNEFKAPPADS 1275
>TLL1_CHICK (Q9DER7) Tolloid-like protein 1 precursor (EC 3.4.24.-) (Chicken| tolloid-like protein 1) (Metalloprotease colloid) Length = 1008 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = -2 Query: 341 PPARGTTWAASTSPGHRLPATDQRHHVSQHVAGAFE 234 P + TW S +PG R+ T + QH A++ Sbjct: 790 PSRKECTWEISATPGQRVKLTFNEFEIEQHQECAYD 825
>RBLL_CHLLT (Q9AMC5) Ribulose bisphosphate carboxylase-like protein| (RuBisCO-like protein) (Fragment) Length = 434 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -1 Query: 366 GGCDGALTPAGAWDDLGGLDFTWPPPAG 283 GG D ALT W +G +DF + P G Sbjct: 357 GGSDSALTLGTVWRKVGSVDFGFVPGRG 384
>LRTM4_MOUSE (Q80XG9) Leucine-rich repeat transmembrane neuronal protein 4| precursor Length = 590 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Frame = -2 Query: 344 PPPARGTTWAASTSPGHRLPATDQRH-HVSQH--VAGA 240 P T A S SPG ++P TD + HVS H +AG+ Sbjct: 392 PDAVPATLEAVSPSPGFQIPGTDHEYEHVSFHKIIAGS 429
>TLL1_BRARE (O57460) Dorsal-ventral patterning tolloid-like protein 1 precursor| (EC 3.4.24.-) (Mini fin protein) Length = 1022 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/36 (27%), Positives = 18/36 (50%) Frame = -2 Query: 341 PPARGTTWAASTSPGHRLPATDQRHHVSQHVAGAFE 234 P + TW + +PGHR+ + + QH A++ Sbjct: 804 PSRKECTWDITATPGHRVKISFNEFEIEQHQECAYD 839
>ACHA2_PANTR (Q5IS52) Neuronal acetylcholine receptor protein, alpha-2 subunit| precursor Length = 529 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +2 Query: 284 PAGGGQVKSRPPKSSHAPAGVSAPSQPPDGAA 379 PAGG + K PP++ P +P+ P G + Sbjct: 23 PAGGEEAKRPPPRAPGDPLSSPSPTALPQGGS 54
>ACHA2_HUMAN (Q15822) Neuronal acetylcholine receptor protein, alpha-2 subunit| precursor Length = 529 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +2 Query: 284 PAGGGQVKSRPPKSSHAPAGVSAPSQPPDGAA 379 PAGG + K PP++ P +P+ P G + Sbjct: 23 PAGGEEAKRPPPRAPGDPLSSPSPTALPQGGS 54
>BMP1_MOUSE (P98063) Bone morphogenetic protein 1 precursor (EC 3.4.24.19)| (BMP-1) (Procollagen C-proteinase) (PCP) (Mammalian tolloid protein) (mTld) Length = 991 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -2 Query: 341 PPARGTTWAASTSPGHRLPAT 279 P + TWA S++PGHR+ T Sbjct: 773 PSKKECTWAISSTPGHRVKLT 793
>VE2_BPV6 (Q705F3) Regulatory protein E2| Length = 435 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 341 PPARGTTWAASTSPGHRLPATDQRHHVS 258 P R S SPGH+ P T +R H S Sbjct: 213 PGRRQRPQTGSYSPGHKAPVTSRRRHSS 240
>GGT4_HUMAN (Q9UJ14) Gamma-glutamyltransferase 4 precursor (EC 2.3.2.2)| (Gamma-glutamyltranspeptidase 4) (Gamma-glutamyltransferase-like 3) (Gamma-glutamyltransferase-like 5) [Contains: Gamma-glutamyltransferase 4 heavy chain; Gamma-glutamyltransferase 4 Length = 666 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -1 Query: 354 GALTPAGAWDDLGGLDFTWPPPAGN*PASSCQSACRRRVRGSCFII 217 G +TP+G + LDF+WP N A S +++ + R F++ Sbjct: 503 GLITPSGILLNSQMLDFSWPNRTANHSAPSLENSVQPGKRPLSFLL 548
>ZP2_BOVIN (Q9BH10) Zona pellucida sperm-binding protein 2 precursor (Zona| pellucida glycoprotein ZP2) (Zona pellucida protein A) Length = 713 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -3 Query: 259 VSMSPARSRLLFYHRSLM*CDQL 191 VS PA S L+++H S + CDQL Sbjct: 596 VSEDPAFSHLVYFHCSALICDQL 618
>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)| Length = 939 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Frame = +2 Query: 284 PAGGGQVKSRP---PKSSHAPAGVSAPSQPPDGAAS 382 PAG GQ +S P P+S P+G P P +S Sbjct: 132 PAGPGQGRSSPAWEPRSPRCPSGPEPPEDPRGARSS 167
>PILQ_PSEAE (P34750) Fimbrial assembly protein pilQ precursor| Length = 714 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +2 Query: 275 GQLPAGGGQVKSRPPKSSHAPAGVSAPSQP 364 G PAG + P K+S APA + P +P Sbjct: 124 GNSPAGASVASAAPVKASPAPASYAQPIKP 153
>CYAY_ECO57 (Q8XAP0) Protein cyaY| Length = 106 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Frame = +3 Query: 144 NGSSYVIR-----HQVWRKMSSWSHHMRLR**NRSLERAGDMLTDMMTLVSCRQA 293 NGS +I HQVW +H L+ +R+G+ D++ + +QA Sbjct: 45 NGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWICDRSGETFRDLLEQAATQQA 99
>NCA11_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa isoform precursor| (N-CAM 180) (NCAM-180) Length = 1115 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +2 Query: 284 PAGGGQVKSRPPKSSHAPAGVSAPSQPPDGAAS 382 PA G+ PP S +P AP+ P GAAS Sbjct: 930 PASAGETSKAPPASKASP----APTPTPAGAAS 958
>BMP1_HUMAN (P13497) Bone morphogenetic protein 1 precursor (EC 3.4.24.19)| (BMP-1) (Procollagen C-proteinase) (PCP) (Mammalian tolloid protein) (mTld) Length = 986 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -2 Query: 341 PPARGTTWAASTSPGHRLPAT 279 P + TWA S++PGHR+ T Sbjct: 768 PSKKECTWAISSTPGHRVKLT 788 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,518,393 Number of Sequences: 219361 Number of extensions: 1064352 Number of successful extensions: 3796 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3398 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3769 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
