>NIT4_NEUCR (P28349) Nitrogen assimilation transcription factor nit-4|
          Length = 1090

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -2

Query: 432  RGWQGWDR*SGSRAGAGHSRTSTGGMPRGGAPT 334
            +G+QGWD   G   GAG + TSTGG+  GG PT
Sbjct: 933  QGFQGWDLEGG---GAG-TATSTGGIGDGGGPT 961

>DRTS_SOYBN (P51820) Bifunctional dihydrofolate reductase-thymidylate synthase|
           (DHFR-TS) [Includes: Dihydrofolate reductase (EC
           1.5.1.3); Thymidylate synthase (EC 2.1.1.45)]
          Length = 530

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 421 GLGQMKRFTSGRGAFQDFDWRDAERRGSDVDHDYEDDGF 305
           G+G  +R     G    F WR    R +D+ HDY   GF
Sbjct: 337 GVGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGF 375

>EWS_MOUSE (Q61545) RNA-binding protein EWS|
          Length = 655

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -2

Query: 438 RGRGWQGWDR*SGSRAGAGHSRTSTGGMPRGG 343
           RGRG  G+DR   SR G G  R   G   RGG
Sbjct: 300 RGRGRGGFDRGGMSRGGRGGGRGGLGAGERGG 331

>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = -2

Query: 438 RGRGWQGWDR*SGSRAGAGHSRTSTGGMPRGG 343
           RGRG  G     G  AG G  RT  GG P GG
Sbjct: 277 RGRGGGGGAGPRGGGAGGGAPRTGFGGRPGGG 308

>PATR_LEIXX (Q6ABX6) Putative phenylalanine aminotransferase (EC 2.6.1.-)|
          Length = 361

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -1

Query: 424 AGLGQMKRFTSGRGAFQDFDWRD--AERRGSDVDHDYEDDGFVAFSAPLVLGGGVVASEP 251
           A LG + R+    GA    D RD  AER G DVD  +   G VA  A L+     VA   
Sbjct: 45  ATLGGLNRYPDAGGA----DLRDKLAERHGVDVDQVHLGSGSVALLAQLI---RAVAGAG 97

Query: 250 RKEVNLWR 227
            + V  WR
Sbjct: 98  DEVVYSWR 105

>LRFN2_HUMAN (Q9ULH4) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 2 precursor
          Length = 789

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = -1

Query: 328 HDYEDDGFVAFSAPLVLGGGVVASEPRKEVNLWRRRPMSPPTPLELP*DES 176
           H ++   F A +A  V+ GG   S PRK  N+W +R +S    L LP +ES
Sbjct: 722 HSFDMGDFAAAAAGGVVPGGY--SPPRKVSNIWTKRSLSVNGML-LPFEES 769

>INSM1_HUMAN (Q01101) Insulinoma-associated protein 1 (Zinc finger protein IA-1)|
          Length = 510

 Score = 24.6 bits (52), Expect(2) = 5.9
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
 Frame = -2

Query: 237 TCGGA-------APCPLPLRWSSPEMRAVAAAASLPAC 145
           +CGGA       +P P PL    P  RA AA A+  AC
Sbjct: 35  SCGGARAEPPAPSPVPGPLPPPPPAERAHAALAAALAC 72



 Score = 22.7 bits (47), Expect(2) = 5.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 157 PTCMHAGHAECVHP*SLYS 101
           P   H G+ E  HP  LYS
Sbjct: 83  PRAAHFGNPEAAHPAPLYS 101

>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1207

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 311 VVLVIMVDVGAPPLGIPPVEVLECPAPAREPL 406
           +VL I  D G  PLG+PP    E P PAR  L
Sbjct: 687 LVLQIFRDKGCMPLGVPPPR-SEAPRPARYQL 717

>TMAP1_HUMAN (P84157) Transmembrane anchor protein 1|
          Length = 204

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 341 APPLGIPPVEVLECPAPAREPLHLSQPCHPRP 436
           APP   PP E    PAP+R       PC P P
Sbjct: 40  APPEPAPPAEATGAPAPSR-------PCAPEP 64

>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 255 SDATTPPPSTSGAENATNPXXXXXXXXXE-PLLSASLQSKSWNAPRPLVNRFICPSPAIP 431
           S A  P PS+S  E+++ P           P+ S++ +S S   P P  +     S  +P
Sbjct: 664 SSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVP 723

Query: 432 GP 437
            P
Sbjct: 724 TP 725



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +3

Query: 255 SDATTPPPSTSGAENATNPXXXXXXXXXE----PLLSASLQSKSWNAPRPLVNRFICPSP 422
           S A  P PS+S  E+++ P         E    P+ S++ +S S   P P  +     S 
Sbjct: 592 SSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSA 651

Query: 423 AIPGP 437
            +P P
Sbjct: 652 PVPTP 656

>SYNJ1_BOVIN (O18964) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1) (p150)
            (Fragment)
          Length = 1324

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 341  APPLGIPPVEVLECPAPAREPLHLSQPCHPRPR 439
            APP   PP      PAPARE +  ++    RPR
Sbjct: 1121 APPQRPPPPSGARSPAPARERVWSTRKAQERPR 1153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,393,375
Number of Sequences: 219361
Number of extensions: 1189195
Number of successful extensions: 4578
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4574
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)