ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450184.1| Oryza sativa (japonica cultivar-group), mRNA 103 5e-19
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
3dbj|AK073400.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
4dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
5gb|AY106863.1| Zea mays PCO092299 mRNA sequence 94 5e-16
6gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 48 0.024
7ref|XM_504805.1| Yarrowia lipolytica CLIB122, YALI0F00132g predi... 44 0.38
8emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 44 0.38
9gb|AE017141.1| Yersinia pestis biovar Medievalis str. 91001 sect... 42 1.5
10gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
11gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 42 1.5
12gb|AE009952.1| Yersinia pestis KIM, complete genome 42 1.5
13emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 42 1.5
14emb|AJ414142.1| Yersinia pestis strain CO92 complete genome; seg... 42 1.5
15gb|AF480909.1| Legionella pneumophila clone pB17C smlA, lprN, lm... 42 1.5
16dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.5
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
19gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete... 42 1.5
20gb|AE010429.1| Methanopyrus kandleri AV19 section 128 of 157 of ... 40 5.9
21gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.9
22gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.9
23gb|AC111007.4| Mus musculus BAC clone RP23-226I10 from 3, comple... 40 5.9
24gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.9
25gb|AE008915.1| Salmonella typhimurium LT2, section 219 of 220 of... 40 5.9
26emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.9
27emb|BX640436.1| Bordetella parapertussis strain 12822, complete ... 40 5.9
28emb|BX640422.1| Bordetella pertussis strain Tohama I, complete g... 40 5.9
29emb|AL627284.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 5.9
30dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.9
31gb|AF462607.1|AF462607 Macaca mulatta neuroligin 2 mRNA, partial... 40 5.9
32gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 5.9
33gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 5.9
34dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.9
35dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
36emb|AL928693.9| Mouse DNA sequence from clone RP23-407K8 on chro... 40 5.9
37gb|AC108439.22| Mus musculus chromosome 8, clone RP23-214F1, com... 40 5.9
38gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 5.9
39gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.9
40gb|AC174082.3| Mus musculus BAC clone RP23-395H10 from chromosom... 40 5.9
41gb|AC147237.3| Mus musculus BAC clone RP23-370E6 from 3, complet... 40 5.9
42gb|AC154851.3| Mus musculus BAC clone RP23-28P10 from chromosome... 40 5.9
43dbj|AB039273.1| Streptomyces griseus gene for ECF sigma factor A... 40 5.9 
>ref|XM_450184.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 765

 Score =  103 bits (52), Expect = 5e-19
 Identities = 106/124 (85%)
 Strand = Plus / Minus

                                                                       
Query: 198 agcggagtgggaggggacatggggcggcgccgccacaggttcacctccttcctgggctcc 257
           |||||||||||||| | |||||| || || | ||| ||||||||||||||||| ||||||
Sbjct: 752 agcggagtgggaggagccatgggtcgccggctccagaggttcacctccttcctcggctcc 693

                                                                       
Query: 258 gacgccaccaccccgccgcccagcaccagcggcgccgagaacgccacgaacccgtcgtcc 317
           ||||||||||  |||||||| ||||| ||||||||||||  ||| |||| | ||||||| 
Sbjct: 692 gacgccaccaggccgccgccgagcacgagcggcgccgagtgcgcgacgagcacgtcgtcg 633

               
Query: 318 tcgt 321
           ||||
Sbjct: 632 tcgt 629



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                       
Query: 346 tcctctcggcatccctccagtcgaagtcctggaatgccccgcgcccgctcgtgaaccgct 405
           ||||||| || ||||||||||||||||||| ||| ||| |||| ||||| ||||||||||
Sbjct: 616 tcctctccgcctccctccagtcgaagtcctcgaacgccgcgcggccgctggtgaaccgct 557

                           
Query: 406 tcatctgtcccagccc 421
           ||||||| || |||||
Sbjct: 556 tcatctgcccgagccc 541
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  103 bits (52), Expect = 5e-19
 Identities = 106/124 (85%)
 Strand = Plus / Minus

                                                                            
Query: 198      agcggagtgggaggggacatggggcggcgccgccacaggttcacctccttcctgggctcc 257
                |||||||||||||| | |||||| || || | ||| ||||||||||||||||| ||||||
Sbjct: 21085424 agcggagtgggaggagccatgggtcgccggctccagaggttcacctccttcctcggctcc 21085365

                                                                            
Query: 258      gacgccaccaccccgccgcccagcaccagcggcgccgagaacgccacgaacccgtcgtcc 317
                ||||||||||  |||||||| ||||| ||||||||||||  ||| |||| | ||||||| 
Sbjct: 21085364 gacgccaccaggccgccgccgagcacgagcggcgccgagtgcgcgacgagcacgtcgtcg 21085305

                    
Query: 318      tcgt 321
                ||||
Sbjct: 21085304 tcgt 21085301



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                            
Query: 346      tcctctcggcatccctccagtcgaagtcctggaatgccccgcgcccgctcgtgaaccgct 405
                ||||||| || ||||||||||||||||||| ||| ||| |||| ||||| ||||||||||
Sbjct: 21085288 tcctctccgcctccctccagtcgaagtcctcgaacgccgcgcggccgctggtgaaccgct 21085229

                                
Query: 406      tcatctgtcccagccc 421
                ||||||| || |||||
Sbjct: 21085228 tcatctgcccgagccc 21085213



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 258     gacgccaccaccccgccgcc 277
               ||||||||||||||||||||
Sbjct: 1606024 gacgccaccaccccgccgcc 1606043
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>dbj|AK073400.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044N08, full
           insert sequence
          Length = 1004

 Score =  103 bits (52), Expect = 5e-19
 Identities = 106/124 (85%)
 Strand = Plus / Minus

                                                                       
Query: 198 agcggagtgggaggggacatggggcggcgccgccacaggttcacctccttcctgggctcc 257
           |||||||||||||| | |||||| || || | ||| ||||||||||||||||| ||||||
Sbjct: 801 agcggagtgggaggagccatgggtcgccggctccagaggttcacctccttcctcggctcc 742

                                                                       
Query: 258 gacgccaccaccccgccgcccagcaccagcggcgccgagaacgccacgaacccgtcgtcc 317
           ||||||||||  |||||||| ||||| ||||||||||||  ||| |||| | ||||||| 
Sbjct: 741 gacgccaccaggccgccgccgagcacgagcggcgccgagtgcgcgacgagcacgtcgtcg 682

               
Query: 318 tcgt 321
           ||||
Sbjct: 681 tcgt 678



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                       
Query: 346 tcctctcggcatccctccagtcgaagtcctggaatgccccgcgcccgctcgtgaaccgct 405
           ||||||| || ||||||||||||||||||| ||| ||| |||| ||||| ||||||||||
Sbjct: 665 tcctctccgcctccctccagtcgaagtcctcgaacgccgcgcggccgctggtgaaccgct 606

                           
Query: 406 tcatctgtcccagccc 421
           ||||||| || |||||
Sbjct: 605 tcatctgcccgagccc 590
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>dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone: P0478E02
          Length = 140715

 Score =  103 bits (52), Expect = 5e-19
 Identities = 106/124 (85%)
 Strand = Plus / Minus

                                                                          
Query: 198    agcggagtgggaggggacatggggcggcgccgccacaggttcacctccttcctgggctcc 257
              |||||||||||||| | |||||| || || | ||| ||||||||||||||||| ||||||
Sbjct: 106724 agcggagtgggaggagccatgggtcgccggctccagaggttcacctccttcctcggctcc 106665

                                                                          
Query: 258    gacgccaccaccccgccgcccagcaccagcggcgccgagaacgccacgaacccgtcgtcc 317
              ||||||||||  |||||||| ||||| ||||||||||||  ||| |||| | ||||||| 
Sbjct: 106664 gacgccaccaggccgccgccgagcacgagcggcgccgagtgcgcgacgagcacgtcgtcg 106605

                  
Query: 318    tcgt 321
              ||||
Sbjct: 106604 tcgt 106601



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                          
Query: 346    tcctctcggcatccctccagtcgaagtcctggaatgccccgcgcccgctcgtgaaccgct 405
              ||||||| || ||||||||||||||||||| ||| ||| |||| ||||| ||||||||||
Sbjct: 106588 tcctctccgcctccctccagtcgaagtcctcgaacgccgcgcggccgctggtgaaccgct 106529

                              
Query: 406    tcatctgtcccagccc 421
              ||||||| || |||||
Sbjct: 106528 tcatctgcccgagccc 106513
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>gb|AY106863.1| Zea mays PCO092299 mRNA sequence
          Length = 347

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                       
Query: 216 atggggcggcgccgccacaggttcacctccttcctgggctccgacgccaccaccccgccg 275
           |||||||| |||| ||||||||||||||||||||| |||||||| || ||||||||||| 
Sbjct: 82  atggggcgacgcctccacaggttcacctccttcctcggctccgaggctaccaccccgccc 23

                          
Query: 276 cccagcaccagcggc 290
           || ||||||||||||
Sbjct: 22  ccgagcaccagcggc 8
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 262     ccaccaccccgccgcccagcacca 285
               ||||||||||||||||||||||||
Sbjct: 2383834 ccaccaccccgccgcccagcacca 2383857
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>ref|XM_504805.1| Yarrowia lipolytica CLIB122, YALI0F00132g predicted mRNA
          Length = 1299

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 301 ccacgaacccgtcgtcctcgtaatca 326
           |||||||||||||||| |||||||||
Sbjct: 613 ccacgaacccgtcgtcttcgtaatca 588
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia
             lipolytica
          Length = 4003362

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 301   ccacgaacccgtcgtcctcgtaatca 326
             |||||||||||||||| |||||||||
Sbjct: 14958 ccacgaacccgtcgtcttcgtaatca 14983
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>gb|AE017141.1| Yersinia pestis biovar Medievalis str. 91001 section 15 of 16 of the
              complete genome
          Length = 293371

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 264    accaccccgccgcccagcacc 284
              |||||||||||||||||||||
Sbjct: 188545 accaccccgccgcccagcacc 188565
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>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007H22, complete sequence
          Length = 160938

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 260   cgccaccaccccgccgcccagcacc 284
             |||||||||||||||||| ||||||
Sbjct: 30896 cgccaccaccccgccgccgagcacc 30920
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 45      tttacaagatcaaatcgatac 65
               |||||||||||||||||||||
Sbjct: 2846882 tttacaagatcaaatcgatac 2846902
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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 264     accaccccgccgcccagcacc 284
               |||||||||||||||||||||
Sbjct: 4156458 accaccccgccgcccagcacc 4156478
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 264    accaccccgccgcccagcacc 284
              |||||||||||||||||||||
Sbjct: 691362 accaccccgccgcccagcacc 691342
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>emb|AJ414142.1| Yersinia pestis strain CO92 complete genome; segment 2/20
          Length = 214050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 264    accaccccgccgcccagcacc 284
              |||||||||||||||||||||
Sbjct: 176100 accaccccgccgcccagcacc 176080
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>gb|AF480909.1| Legionella pneumophila clone pB17C smlA, lprN, lmxE, and lmxF
          genes, complete cds; and unknown gene
          Length = 8542

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 45 tttacaagatcaaatcgatac 65
          |||||||||||||||||||||
Sbjct: 68 tttacaagatcaaatcgatac 48
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 260     cgccaccaccccgccgcccagcacc 284
               |||||||||||||||||| ||||||
Sbjct: 6855955 cgccaccaccccgccgccgagcacc 6855931
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    ccgccgcccagcaccagcggc 290
              |||||||||||||||||||||
Sbjct: 340176 ccgccgcccagcaccagcggc 340156
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 260     cgccaccaccccgccgcccagcacc 284
               |||||||||||||||||| ||||||
Sbjct: 6922422 cgccaccaccccgccgccgagcacc 6922398
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>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence
          Length = 53591

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 272   gccgcccagcaccagcggcgccgag 296
             ||||| |||||||||||||||||||
Sbjct: 47534 gccgcacagcaccagcggcgccgag 47558
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>gb|AE010429.1| Methanopyrus kandleri AV19 section 128 of 157 of the complete genome
          Length = 12877

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   tccctccagtcgaagtcctg 376
             ||||||||||||||||||||
Sbjct: 10987 tccctccagtcgaagtcctg 10968
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 259    acgccaccaccccgccgcccagca 282
              |||||| |||||||||||||||||
Sbjct: 412206 acgccatcaccccgccgcccagca 412183
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 262     ccaccaccccgccgcccagc 281
               ||||||||||||||||||||
Sbjct: 3541399 ccaccaccccgccgcccagc 3541418
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>gb|AC111007.4| Mus musculus BAC clone RP23-226I10 from 3, complete sequence
          Length = 176259

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 231   cacaggttcacctccttcctgggc 254
             |||||||||| |||||||||||||
Sbjct: 13249 cacaggttcagctccttcctgggc 13226
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 270     ccgccgcccagcaccagcgg 289
               ||||||||||||||||||||
Sbjct: 1714144 ccgccgcccagcaccagcgg 1714163
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>gb|AE008915.1| Salmonella typhimurium LT2, section 219 of 220 of the complete genome
          Length = 21405

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   accaccccgccgcccagcac 283
             ||||||||||||||||||||
Sbjct: 12318 accaccccgccgcccagcac 12299
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>emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete genome; segment 16/16
          Length = 123385

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    cgcccagcaccagcggcgcc 293
              ||||||||||||||||||||
Sbjct: 119561 cgcccagcaccagcggcgcc 119542
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>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14
          Length = 255260

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    cgcccagcaccagcggcgcc 293
              ||||||||||||||||||||
Sbjct: 251436 cgcccagcaccagcggcgcc 251417
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>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12
          Length = 257701

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    cgcccagcaccagcggcgcc 293
              ||||||||||||||||||||
Sbjct: 253944 cgcccagcaccagcggcgcc 253925
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>emb|AL627284.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 20/20
          Length = 88037

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   accaccccgccgcccagcac 283
             ||||||||||||||||||||
Sbjct: 65347 accaccccgccgcccagcac 65328
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 270     ccgccgcccagcaccagcggcgcc 293
               |||||||||| |||||||||||||
Sbjct: 3080212 ccgccgcccatcaccagcggcgcc 3080235
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>gb|AF462607.1|AF462607 Macaca mulatta neuroligin 2 mRNA, partial cds
          Length = 194

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 259 acgccaccaccccgccgccc 278
           ||||||||||||||||||||
Sbjct: 107 acgccaccaccccgccgccc 126
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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 244     ccttcctgggctccgacgccacca 267
               ||||||||||| ||||||||||||
Sbjct: 1044066 ccttcctgggcaccgacgccacca 1044089
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     accaccccgccgcccagcac 283
               ||||||||||||||||||||
Sbjct: 4562355 accaccccgccgcccagcac 4562336



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     cccgccgcccagcaccagcg 288
               ||||||||||||||||||||
Sbjct: 2046624 cccgccgcccagcaccagcg 2046643
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 261    gccaccaccccgccgcccagcacc 284
              ||||||||||||||||| ||||||
Sbjct: 449195 gccaccaccccgccgccgagcacc 449218
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>dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0018I03
          Length = 145818

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    gacgccaccaccccgccgcc 277
              ||||||||||||||||||||
Sbjct: 134268 gacgccaccaccccgccgcc 134287
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>emb|AL928693.9| Mouse DNA sequence from clone RP23-407K8 on chromosome 2, complete
              sequence
          Length = 206478

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    tactgtacaaactctaggga 119
              ||||||||||||||||||||
Sbjct: 177705 tactgtacaaactctaggga 177686
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>gb|AC108439.22| Mus musculus chromosome 8, clone RP23-214F1, complete sequence
          Length = 205732

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   gggaggggacatggggcggc 225
             ||||||||||||||||||||
Sbjct: 42155 gggaggggacatggggcggc 42136
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     accaccccgccgcccagcac 283
               ||||||||||||||||||||
Sbjct: 4769271 accaccccgccgcccagcac 4769252
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 146    catgcaggtaggctagctgctgcg 169
              |||||||||||||||||| |||||
Sbjct: 120425 catgcaggtaggctagcttctgcg 120402
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>gb|AC174082.3| Mus musculus BAC clone RP23-395H10 from chromosome 13, complete
            sequence
          Length = 208596

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    aaaaatctttaattccttcc 23
            ||||||||||||||||||||
Sbjct: 5165 aaaaatctttaattccttcc 5184
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>gb|AC147237.3| Mus musculus BAC clone RP23-370E6 from 3, complete sequence
          Length = 175691

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 231   cacaggttcacctccttcctgggc 254
             |||||||||| |||||||||||||
Sbjct: 20519 cacaggttcagctccttcctgggc 20542
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>gb|AC154851.3| Mus musculus BAC clone RP23-28P10 from chromosome 13, complete sequence
          Length = 234202

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      aaaaatctttaattccttcc 23
              ||||||||||||||||||||
Sbjct: 184043 aaaaatctttaattccttcc 184062
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>dbj|AB039273.1| Streptomyces griseus gene for ECF sigma factor AdsA, complete cds
          Length = 4687

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 253  gctccgacgccaccaccccg 272
            ||||||||||||||||||||
Sbjct: 3886 gctccgacgccaccaccccg 3905


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,430,880
Number of Sequences: 3902068
Number of extensions: 3430880
Number of successful extensions: 71669
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70644
Number of HSP's gapped (non-prelim): 1025
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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