ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Ca... 42 0.56
2gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 42 0.56
3emb|CR940311.11| M.truncatula DNA sequence from clone MTH2-17E17... 38 8.8
4emb|Z72514.1|CET10B10 Caenorhabditis elegans Cosmid T10B10, comp... 38 8.8
5emb|Z73016.1|SCYGR231C S.cerevisiae chromosome VII reading frame... 38 8.8
6emb|X87941.1|SCDNAGENS S.cerevisiae CRM1, YML9, PET54, SMI1, PHO... 38 8.8
7ref|XM_781530.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 8.8
8gb|AC008249.14| Homo sapiens 3 BAC RP11-211P13 (Roswell Park Can... 38 8.8
9gb|AC157937.6| Mus musculus chromosome 1, clone RP23-417N10, com... 38 8.8
10emb|BX640579.10| Zebrafish DNA sequence from clone CH211-266K5 i... 38 8.8
11gb|AC147446.3| Gallus gallus BAC clone CH261-7A22 from chromosom... 38 8.8
12gb|AC158363.2| Mus musculus BAC clone RP23-214J3 from chromosome... 38 8.8

>gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 151302

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    acctcaagaaatcaagagact 107
             |||||||||||||||||||||
Sbjct: 48173 acctcaagaaatcaagagact 48193



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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 37      cgtatgtaaaaggggagaaacaaag 61
               |||||||||||||| ||||||||||
Sbjct: 4289606 cgtatgtaaaagggaagaaacaaag 4289582



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>emb|CR940311.11| M.truncatula DNA sequence from clone MTH2-17E17 on chromosome 3,
             complete sequence
          Length = 122868

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 84    tatacctcaagaaatcaagagac 106
             ||||||||||||||| |||||||
Sbjct: 79478 tatacctcaagaaataaagagac 79456



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>emb|Z72514.1|CET10B10 Caenorhabditis elegans Cosmid T10B10, complete sequence
          Length = 40460

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 117   acaaactaaactctacatt 135
             |||||||||||||||||||
Sbjct: 37400 acaaactaaactctacatt 37382



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>emb|Z73016.1|SCYGR231C S.cerevisiae chromosome VII reading frame ORF YGR231c
          Length = 1653

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 90  tcaagaaatcaagagacta 108
           |||||||||||||||||||
Sbjct: 399 tcaagaaatcaagagacta 381



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>emb|X87941.1|SCDNAGENS S.cerevisiae CRM1, YML9, PET54, SMI1, PHO81, YHB4 and PFK1 genes
          Length = 43118

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 90    tcaagaaatcaagagacta 108
             |||||||||||||||||||
Sbjct: 24463 tcaagaaatcaagagacta 24445



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>ref|XM_781530.1| PREDICTED: Strongylocentrotus purpuratus similar to inhibitor of
            apoptosis protein 1 (LOC581540), partial mRNA
          Length = 1619

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 38   gtatgtaaaaggggagaaa 56
            |||||||||||||||||||
Sbjct: 1576 gtatgtaaaaggggagaaa 1558



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>gb|AC008249.14| Homo sapiens 3 BAC RP11-211P13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184203

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 87     acctcaagaaatcaagaga 105
              |||||||||||||||||||
Sbjct: 152585 acctcaagaaatcaagaga 152567



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>gb|AC157937.6| Mus musculus chromosome 1, clone RP23-417N10, complete sequence
          Length = 173856

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 42    gtaaaaggggagaaacaaa 60
             |||||||||||||||||||
Sbjct: 48259 gtaaaaggggagaaacaaa 48277



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>emb|BX640579.10| Zebrafish DNA sequence from clone CH211-266K5 in linkage group 19,
             complete sequence
          Length = 168768

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 26    ttaataactaccgtatgtaaaagggga 52
             ||||||||||| |||||| ||||||||
Sbjct: 74063 ttaataactacagtatgttaaagggga 74037



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>gb|AC147446.3| Gallus gallus BAC clone CH261-7A22 from chromosome unknown, complete
              sequence
          Length = 182128

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 49     gggagaaacaaagcttaattact 71
              ||||||||||||||| |||||||
Sbjct: 124788 gggagaaacaaagctaaattact 124810



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>gb|AC158363.2| Mus musculus BAC clone RP23-214J3 from chromosome 15, complete sequence
          Length = 228138

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 44    aaaaggggagaaacaaagcttaa 66
             ||||| |||||||||||||||||
Sbjct: 78671 aaaagaggagaaacaaagcttaa 78693


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,278,920
Number of Sequences: 3902068
Number of extensions: 1278920
Number of successful extensions: 93598
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93546
Number of HSP's gapped (non-prelim): 52
length of query: 179
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 157
effective length of database: 17,147,199,772
effective search space: 2692110364204
effective search space used: 2692110364204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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