ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart24e02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197709.1| Oryza sativa (japonica cultivar-group) putative transcription factor (OSJNBa0010C11.4), mRNA Length = 1358 Score = 258 bits (130), Expect = 2e-65 Identities = 187/206 (90%) Strand = Plus / Minus Query: 297 cggtggctgccgcggatgagaacgagctccttctggcggcgcagctccatgaccttgcgg 356 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 1252 cggtggctgccgcggatgatgaggagctccttctggcggcgcagctccatgaccttgcgg 1193 Query: 357 tgagagttggagtgttgtgtgagcaggaaggtggggcttgccgccggccggtactccggc 416 || ||||||||||| || || |||| ||| |||||||| |||||||||| |||||||||| Sbjct: 1192 tgggagttggagtgctgcgtcagcacgaacgtggggctcgccgccggcctgtactccggc 1133 Query: 417 accagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtcttgggccccagc 476 | ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 1132 atcagccgcccggacttgaacctcacgccgcacgcgttgcacagggtcttggggcccagg 1073 Query: 477 gggcccgttcgccattgcggcgtctt 502 || ||||| ||||| ||||||||||| Sbjct: 1072 ggccccgtccgccactgcggcgtctt 1047 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 224 gccgtagtcatggaacatgagctccggcttcacggtc 260 ||||||||| ||||||||||||||||| || ||||| Sbjct: 1349 gccgtagtcgcggaacatgagctccggcctcccggtc 1313
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 258 bits (130), Expect = 2e-65 Identities = 187/206 (90%) Strand = Plus / Minus Query: 297 cggtggctgccgcggatgagaacgagctccttctggcggcgcagctccatgaccttgcgg 356 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 100630 cggtggctgccgcggatgatgaggagctccttctggcggcgcagctccatgaccttgcgg 100571 Query: 357 tgagagttggagtgttgtgtgagcaggaaggtggggcttgccgccggccggtactccggc 416 || ||||||||||| || || |||| ||| |||||||| |||||||||| |||||||||| Sbjct: 100570 tgggagttggagtgctgcgtcagcacgaacgtggggctcgccgccggcctgtactccggc 100511 Query: 417 accagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtcttgggccccagc 476 | ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 100510 atcagccgcccggacttgaacctcacgccgcacgcgttgcacagggtcttggggcccagg 100451 Query: 477 gggcccgttcgccattgcggcgtctt 502 || ||||| ||||| ||||||||||| Sbjct: 100450 ggccccgtccgccactgcggcgtctt 100425 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 224 gccgtagtcatggaacatgagctccggcttcacggtc 260 ||||||||| ||||||||||||||||| || ||||| Sbjct: 100727 gccgtagtcgcggaacatgagctccggcctcccggtc 100691 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aacaaattaattaacaaaaa 56 |||||||||||||||||||| Sbjct: 100954 aacaaattaattaacaaaaa 100935
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 258 bits (130), Expect = 2e-65 Identities = 187/206 (90%) Strand = Plus / Minus Query: 297 cggtggctgccgcggatgagaacgagctccttctggcggcgcagctccatgaccttgcgg 356 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 21425617 cggtggctgccgcggatgatgaggagctccttctggcggcgcagctccatgaccttgcgg 21425558 Query: 357 tgagagttggagtgttgtgtgagcaggaaggtggggcttgccgccggccggtactccggc 416 || ||||||||||| || || |||| ||| |||||||| |||||||||| |||||||||| Sbjct: 21425557 tgggagttggagtgctgcgtcagcacgaacgtggggctcgccgccggcctgtactccggc 21425498 Query: 417 accagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtcttgggccccagc 476 | ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 21425497 atcagccgcccggacttgaacctcacgccgcacgcgttgcacagggtcttggggcccagg 21425438 Query: 477 gggcccgttcgccattgcggcgtctt 502 || ||||| ||||| ||||||||||| Sbjct: 21425437 ggccccgtccgccactgcggcgtctt 21425412 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 402 ggccggtactccggcaccagccg 424 ||||||||||||||||||||||| Sbjct: 16333342 ggccggtactccggcaccagccg 16333364 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 cggccggtactccggcaccagc 422 |||||||||||||||||||||| Sbjct: 16334594 cggccggtactccggcaccagc 16334615 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 224 gccgtagtcatggaacatgagctccggcttcacggtc 260 ||||||||| ||||||||||||||||| || ||||| Sbjct: 21425714 gccgtagtcgcggaacatgagctccggcctcccggtc 21425678 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aacaaattaattaacaaaaa 56 |||||||||||||||||||| Sbjct: 21425941 aacaaattaattaacaaaaa 21425922
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 258 bits (130), Expect = 2e-65 Identities = 187/206 (90%) Strand = Plus / Minus Query: 297 cggtggctgccgcggatgagaacgagctccttctggcggcgcagctccatgaccttgcgg 356 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 21436880 cggtggctgccgcggatgatgaggagctccttctggcggcgcagctccatgaccttgcgg 21436821 Query: 357 tgagagttggagtgttgtgtgagcaggaaggtggggcttgccgccggccggtactccggc 416 || ||||||||||| || || |||| ||| |||||||| |||||||||| |||||||||| Sbjct: 21436820 tgggagttggagtgctgcgtcagcacgaacgtggggctcgccgccggcctgtactccggc 21436761 Query: 417 accagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtcttgggccccagc 476 | ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 21436760 atcagccgcccggacttgaacctcacgccgcacgcgttgcacagggtcttggggcccagg 21436701 Query: 477 gggcccgttcgccattgcggcgtctt 502 || ||||| ||||| ||||||||||| Sbjct: 21436700 ggccccgtccgccactgcggcgtctt 21436675 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 402 ggccggtactccggcaccagccg 424 ||||||||||||||||||||||| Sbjct: 16341583 ggccggtactccggcaccagccg 16341605 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 cggccggtactccggcaccagc 422 |||||||||||||||||||||| Sbjct: 16342835 cggccggtactccggcaccagc 16342856 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 224 gccgtagtcatggaacatgagctccggcttcacggtc 260 ||||||||| ||||||||||||||||| || ||||| Sbjct: 21436977 gccgtagtcgcggaacatgagctccggcctcccggtc 21436941 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aacaaattaattaacaaaaa 56 |||||||||||||||||||| Sbjct: 21437204 aacaaattaattaacaaaaa 21437185
>gb|AY107046.1| Zea mays PCO132546 mRNA sequence Length = 678 Score = 242 bits (122), Expect = 9e-61 Identities = 185/206 (89%) Strand = Plus / Minus Query: 297 cggtggctgccgcggatgagaacgagctccttctggcggcgcagctccatgaccttgcgg 356 |||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 313 cggtggcttccgcggatgaggatgagctccttctggcggcgcagctccatgaccttgcgg 254 Query: 357 tgagagttggagtgttgtgtgagcaggaaggtggggcttgccgccggccggtactccggc 416 || ||||||||||| || ||||||| |||||||||||| ||||| || |||||||| ||| Sbjct: 253 tgcgagttggagtgctgcgtgagcacgaaggtggggctggccgcagggcggtactcgggc 194 Query: 417 accagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtcttgggccccagc 476 || |||||||| |||||||| | ||||||||||||||||||||| |||||||| |||||| Sbjct: 193 acgagccgcccggacttgaagcgcacgccgcacgcgttgcacagggtcttggggcccagc 134 Query: 477 gggcccgttcgccattgcggcgtctt 502 || ||||| | ||| ||||||||||| Sbjct: 133 ggccccgtcctccactgcggcgtctt 108 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 224 gccgtagtcatggaacatgagctccggc 251 ||||||||| ||||||||||||||||| Sbjct: 383 gccgtagtcgcggaacatgagctccggc 356
>ref|NM_191182.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtgttgtgtgagcag 382 ||||||||| ||||||||||||| ||||||||||| ||||||||||| | | | || Sbjct: 990 ctccttctgccggcgcagctccagcaccttgcggtgggagttggagtgcttcgataccat 931 Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||| ||| Sbjct: 930 gaaggtggggctcgccgccggccggtactccggcaccagtcgcccggacttgtaccgcac 871 Query: 443 gccgcacgcgttgcacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 ||||||||||||||||| ||||||||||||| ||| ||||| | ||| || |||||||| Sbjct: 870 cccgcacgcgttgcacagtgtcttgggccccatcggccccgtcctccactgtggcgtctt 811
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtgttgtgtgagcag 382 ||||||||| ||||||||||||| ||||||||||| ||||||||||| | | | || Sbjct: 31173937 ctccttctgccggcgcagctccagcaccttgcggtgggagttggagtgcttcgataccat 31173996 Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||| ||| Sbjct: 31173997 gaaggtggggctcgccgccggccggtactccggcaccagtcgcccggacttgtaccgcac 31174056 Query: 443 gccgcacgcgttgcacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 ||||||||||||||||| ||||||||||||| ||| ||||| | ||| || |||||||| Sbjct: 31174057 cccgcacgcgttgcacagtgtcttgggccccatcggccccgtcctccactgtggcgtctt 31174116 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 ggccagccgccgccgcgtcg 293 |||||||||||||||||||| Sbjct: 33169259 ggccagccgccgccgcgtcg 33169240
>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0014K08 Length = 177263 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtgttgtgtgagcag 382 ||||||||| ||||||||||||| ||||||||||| ||||||||||| | | | || Sbjct: 100282 ctccttctgccggcgcagctccagcaccttgcggtgggagttggagtgcttcgataccat 100341 Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||| ||| Sbjct: 100342 gaaggtggggctcgccgccggccggtactccggcaccagtcgcccggacttgtaccgcac 100401 Query: 443 gccgcacgcgttgcacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 ||||||||||||||||| ||||||||||||| ||| ||||| | ||| || |||||||| Sbjct: 100402 cccgcacgcgttgcacagtgtcttgggccccatcggccccgtcctccactgtggcgtctt 100461
>dbj|AK121896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105E11, full insert sequence Length = 1753 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtgttgtgtgagcag 382 ||||||||| ||||||||||||| ||||||||||| ||||||||||| | | | || Sbjct: 1270 ctccttctgccggcgcagctccagcaccttgcggtgggagttggagtgcttcgataccat 1211 Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||| ||| Sbjct: 1210 gaaggtggggctcgccgccggccggtactccggcaccagtcgcccggacttgtaccgcac 1151 Query: 443 gccgcacgcgttgcacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 ||||||||||||||||| ||||||||||||| ||| ||||| | ||| || |||||||| Sbjct: 1150 cccgcacgcgttgcacagtgtcttgggccccatcggccccgtcctccactgtggcgtctt 1091
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04, complete sequence Length = 169073 Score = 151 bits (76), Expect = 3e-33 Identities = 154/180 (85%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtgttgtgtgagcag 382 |||||||||||| |||||||||| ||||||||||| ||||||||||| | | | || Sbjct: 150248 ctccttctggcgccgcagctccaccaccttgcggtgggagttggagtgcttggacaccac 150189 Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 ||| || ||||| ||||||||||||||||||||||| |||||||| |||||| ||| ||| Sbjct: 150188 gaacgtcgggctcgccgccggccggtactccggcacgagccgcccggacttgtaccgcac 150129 Query: 443 gccgcacgcgttgcacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 |||||||||||||||||||||||||| |||| || ||||| | ||| ||||||||||| Sbjct: 150128 cccgcacgcgttgcacagcgtcttgggacccatgggccccgtcctccactgcggcgtctt 150069
>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07, complete sequence Length = 147122 Score = 151 bits (76), Expect = 3e-33 Identities = 154/180 (85%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtgttgtgtgagcag 382 |||||||||||| |||||||||| ||||||||||| ||||||||||| | | | || Sbjct: 46210 ctccttctggcgccgcagctccaccaccttgcggtgggagttggagtgcttggacaccac 46151 Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 ||| || ||||| ||||||||||||||||||||||| |||||||| |||||| ||| ||| Sbjct: 46150 gaacgtcgggctcgccgccggccggtactccggcacgagccgcccggacttgtaccgcac 46091 Query: 443 gccgcacgcgttgcacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 |||||||||||||||||||||||||| |||| || ||||| | ||| ||||||||||| Sbjct: 46090 cccgcacgcgttgcacagcgtcttgggacccatgggccccgtcctccactgcggcgtctt 46031
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 151 bits (76), Expect = 3e-33 Identities = 154/180 (85%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtgttgtgtgagcag 382 |||||||||||| |||||||||| ||||||||||| ||||||||||| | | | || Sbjct: 25633841 ctccttctggcgccgcagctccaccaccttgcggtgggagttggagtgcttggacaccac 25633782 Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 ||| || ||||| ||||||||||||||||||||||| |||||||| |||||| ||| ||| Sbjct: 25633781 gaacgtcgggctcgccgccggccggtactccggcacgagccgcccggacttgtaccgcac 25633722 Query: 443 gccgcacgcgttgcacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 |||||||||||||||||||||||||| |||| || ||||| | ||| ||||||||||| Sbjct: 25633721 cccgcacgcgttgcacagcgtcttgggacccatgggccccgtcctccactgcggcgtctt 25633662
>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049O12, from chromosome 2, complete sequence Length = 155154 Score = 95.6 bits (48), Expect = 1e-16 Identities = 102/120 (85%) Strand = Plus / Plus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||||| ||||||||||| | || || || |||||| | | || Sbjct: 74346 gaaggtggggctcgccgccgggcggtactccgggaagaggcggccggacttgtagcggac 74405 Query: 443 gccgcacgcgttgcacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 ||||||||||||||| ||||||||||| || |||||||||| ||||| ||||||||||| Sbjct: 74406 gccgcacgcgttgcagagcgtcttggggccgagcgggcccgcgcgccactgcggcgtctt 74465
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 95.6 bits (48), Expect = 1e-16 Identities = 102/120 (85%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||||| ||||||||||| | || || || |||||| | | || Sbjct: 34430853 gaaggtggggctcgccgccgggcggtactccgggaagaggcggccggacttgtagcggac 34430794 Query: 443 gccgcacgcgttgcacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 ||||||||||||||| ||||||||||| || |||||||||| ||||| ||||||||||| Sbjct: 34430793 gccgcacgcgttgcagagcgtcttggggccgagcgggcccgcgcgccactgcggcgtctt 34430734 Score = 48.1 bits (24), Expect = 0.028 Identities = 42/48 (87%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtg 370 |||||||| |||||||| ||| | ||||||||||| ||||||||||| Sbjct: 26016930 ctccttcttgcggcgcatctcgagcaccttgcggtgggagttggagtg 26016883 Score = 44.1 bits (22), Expect = 0.44 Identities = 58/70 (82%) Strand = Plus / Minus Query: 399 gccggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcac 458 ||||||||||||||||| | || || || |||||| | | |||||||| |||||||| Sbjct: 26016854 gccggccggtactccgggaggaggcggcccgacttgtagcggacgccgcaggcgttgcag 26016795 Query: 459 agcgtcttgg 468 |||||||||| Sbjct: 26016794 agcgtcttgg 26016785
>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1111_C07 Length = 115190 Score = 95.6 bits (48), Expect = 1e-16 Identities = 102/120 (85%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||||| ||||||||||| | || || || |||||| | | || Sbjct: 47095 gaaggtggggctcgccgccgggcggtactccgggaagaggcggccggacttgtagcggac 47036 Query: 443 gccgcacgcgttgcacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 ||||||||||||||| ||||||||||| || |||||||||| ||||| ||||||||||| Sbjct: 47035 gccgcacgcgttgcagagcgtcttggggccgagcgggcccgcgcgccactgcggcgtctt 46976
>ref|XM_470203.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 660 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||| ||||||||||| | || ||||| |||||||||| ||| Sbjct: 510 gaaggtggggctgttcgccgggcggtactccgggaagaggcgcccggacttgaaccgcac 451 Query: 443 gccgcacgcgttgcacagcgt 463 ||||||||||||||||||||| Sbjct: 450 gccgcacgcgttgcacagcgt 430
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||| ||||||||||| | || ||||| |||||||||| ||| Sbjct: 2488416 gaaggtggggctgttcgccgggcggtactccgggaagaggcgcccggacttgaaccgcac 2488357 Query: 443 gccgcacgcgttgcacagcgt 463 ||||||||||||||||||||| Sbjct: 2488356 gccgcacgcgttgcacagcgt 2488336 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 gccgcacgcgttgcacagcgt 463 ||||||||||||||||||||| Sbjct: 1713155 gccgcacgcgttgcacagcgt 1713175
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||| ||||||||||| | || ||||| |||||||||| ||| Sbjct: 2488526 gaaggtggggctgttcgccgggcggtactccgggaagaggcgcccggacttgaaccgcac 2488467 Query: 443 gccgcacgcgttgcacagcgt 463 ||||||||||||||||||||| Sbjct: 2488466 gccgcacgcgttgcacagcgt 2488446 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 gccgcacgcgttgcacagcgt 463 ||||||||||||||||||||| Sbjct: 1713153 gccgcacgcgttgcacagcgt 1713173
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||| ||||||||||| | || ||||| |||||||||| ||| Sbjct: 60912 gaaggtggggctgttcgccgggcggtactccgggaagaggcgcccggacttgaaccgcac 60853 Query: 443 gccgcacgcgttgcacagcgt 463 ||||||||||||||||||||| Sbjct: 60852 gccgcacgcgttgcacagcgt 60832
>ref|XM_450328.1| Oryza sativa (japonica cultivar-group), mRNA Length = 369 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 407 gtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtctt 466 ||||||||||| ||||||||| ||| ||||||||| ||| ||||||||||| || ||||| Sbjct: 316 gtactccggcatcagccgcccagacatgaacctcaagccacacgcgttgcagagggtctt 257 Query: 467 gggccccagcgggcccgt 484 ||| ||||| || ||||| Sbjct: 256 gggacccaggggacccgt 239
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 407 gtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtctt 466 ||||||||||| ||||||||| ||| ||||||||| ||| ||||||||||| || ||||| Sbjct: 4171788 gtactccggcatcagccgcccagacatgaacctcaagccacacgcgttgcagagggtctt 4171847 Query: 467 gggccccagcgggcccgt 484 ||| ||||| || ||||| Sbjct: 4171848 gggacccaggggacccgt 4171865
>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0066C12 Length = 168874 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 407 gtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtctt 466 ||||||||||| ||||||||| ||| ||||||||| ||| ||||||||||| || ||||| Sbjct: 155269 gtactccggcatcagccgcccagacatgaacctcaagccacacgcgttgcagagggtctt 155328 Query: 467 gggccccagcgggcccgt 484 ||| ||||| || ||||| Sbjct: 155329 gggacccaggggacccgt 155346
>ref|NM_119442.2| Arabidopsis thaliana transcription factor AT4G32890 mRNA, complete cds Length = 1202 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 408 tactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtcttg 467 ||||||||||| |||| |||||| ||| ||||||| ||||| ||||| || |||||||| Sbjct: 838 tactccggcacgagcctccctgatttgtacctcactccgcaagcgttacaaagcgtcttc 779 Query: 468 ggccccagcgggcccgttcgccattgcggcgtctt 502 || |||| || ||||| | ||||||||||||||| Sbjct: 778 ggacccataggtcccgtcctccattgcggcgtctt 744 Score = 40.1 bits (20), Expect = 6.8 Identities = 41/48 (85%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtg 370 ||||||||| || || |||||||| || || ||||||||||| ||||| Sbjct: 923 ctccttctgtcgccggagctccatcactttccggtgagagttcgagtg 876
>emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78 Length = 198669 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 408 tactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtcttg 467 ||||||||||| |||| |||||| ||| ||||||| ||||| ||||| || |||||||| Sbjct: 98155 tactccggcacgagcctccctgatttgtacctcactccgcaagcgttacaaagcgtcttc 98096 Query: 468 ggccccagcgggcccgttcgccattgcggcgtctt 502 || |||| || ||||| | ||||||||||||||| Sbjct: 98095 ggacccataggtcccgtcctccattgcggcgtctt 98061 Score = 40.1 bits (20), Expect = 6.8 Identities = 41/48 (85%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtg 370 ||||||||| || || |||||||| || || ||||||||||| ||||| Sbjct: 98240 ctccttctgtcgccggagctccatcactttccggtgagagttcgagtg 98193
>emb|AL031804.1|ATF26P21 Arabidopsis thaliana DNA chromosome 4, BAC clone F26P21 (ESSA project) Length = 94482 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 408 tactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtcttg 467 ||||||||||| |||| |||||| ||| ||||||| ||||| ||||| || |||||||| Sbjct: 7459 tactccggcacgagcctccctgatttgtacctcactccgcaagcgttacaaagcgtcttc 7400 Query: 468 ggccccagcgggcccgttcgccattgcggcgtctt 502 || |||| || ||||| | ||||||||||||||| Sbjct: 7399 ggacccataggtcccgtcctccattgcggcgtctt 7365 Score = 40.1 bits (20), Expect = 6.8 Identities = 41/48 (85%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtg 370 ||||||||| || || |||||||| || || ||||||||||| ||||| Sbjct: 7544 ctccttctgtcgccggagctccatcactttccggtgagagttcgagtg 7497
>gb|BT008342.1| Arabidopsis thaliana At4g32890 mRNA, complete cds Length = 927 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 408 tactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtcttg 467 ||||||||||| |||| |||||| ||| ||||||| ||||| ||||| || |||||||| Sbjct: 710 tactccggcacgagcctccctgatttgtacctcactccgcaagcgttacaaagcgtcttc 651 Query: 468 ggccccagcgggcccgttcgccattgcggcgtctt 502 || |||| || ||||| | ||||||||||||||| Sbjct: 650 ggacccataggtcccgtcctccattgcggcgtctt 616 Score = 40.1 bits (20), Expect = 6.8 Identities = 41/48 (85%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtg 370 ||||||||| || || |||||||| || || ||||||||||| ||||| Sbjct: 795 ctccttctgtcgccggagctccatcactttccggtgagagttcgagtg 748
>dbj|AK117169.1| Arabidopsis thaliana At4g32890 mRNA for unknown protein, complete cds, clone: RAFL16-71-E16 Length = 1202 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 408 tactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtcttg 467 ||||||||||| |||| |||||| ||| ||||||| ||||| ||||| || |||||||| Sbjct: 838 tactccggcacgagcctccctgatttgtacctcactccgcaagcgttacaaagcgtcttc 779 Query: 468 ggccccagcgggcccgttcgccattgcggcgtctt 502 || |||| || ||||| | ||||||||||||||| Sbjct: 778 ggacccataggtcccgtcctccattgcggcgtctt 744 Score = 40.1 bits (20), Expect = 6.8 Identities = 41/48 (85%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtg 370 ||||||||| || || |||||||| || || ||||||||||| ||||| Sbjct: 923 ctccttctgtcgccggagctccatcactttccggtgagagttcgagtg 876
>gb|BT018418.1| Zea mays clone EL01N0356F04.d mRNA sequence Length = 722 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 405 cggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgtc 464 |||||||| || | ||| ||||| |||||||| | |||||||||||||||||||||||| Sbjct: 262 cggtactcggggaacaggcgcccggacttgaagcgcacgccgcacgcgttgcacagcgtg 203 Query: 465 ttgggccccagcgggccc 482 |||||||| ||||||| Sbjct: 202 ctgggccccgccgggccc 185 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 330 tggcggcgcagctccatgaccttgcggtgagagttggagtg 370 |||||||||| ||||||||| |||||| ||||||||||| Sbjct: 337 tggcggcgcatctccatgacgcggcggtgcgagttggagtg 297
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 405 cggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgt 463 ||||||||||||| ||||| |||| | || ||| |||||||||||||||||||||||| Sbjct: 3496192 cggtactccggcagcagcctcccttgcctgtaccgcacgccgcacgcgttgcacagcgt 3496134 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 402 ggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagc 461 |||| ||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||| Sbjct: 26729548 ggcctgtattccggcagcagcctgccagacttgaacctcacaccgcaagcattgcatagc 26729489 Query: 462 gtcttgggcccca 474 ||||| ||||||| Sbjct: 26729488 gtcttaggcccca 26729476
>dbj|AK068306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136H07, full insert sequence Length = 1612 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 405 cggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgt 463 ||||||||||||| ||||| |||| | || ||| |||||||||||||||||||||||| Sbjct: 1074 cggtactccggcagcagcctcccttgcctgtaccgcacgccgcacgcgttgcacagcgt 1016
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 405 cggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgt 463 ||||||||||||| ||||| |||| | || ||| |||||||||||||||||||||||| Sbjct: 3496138 cggtactccggcagcagcctcccttgcctgtaccgcacgccgcacgcgttgcacagcgt 3496080 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 402 ggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagc 461 |||| ||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||| Sbjct: 26657718 ggcctgtattccggcagcagcctgccagacttgaacctcacaccgcaagcattgcatagc 26657659 Query: 462 gtcttgggcccca 474 ||||| ||||||| Sbjct: 26657658 gtcttaggcccca 26657646
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 405 cggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgt 463 ||||||||||||| ||||| |||| | || ||| |||||||||||||||||||||||| Sbjct: 11120 cggtactccggcagcagcctcccttgcctgtaccgcacgccgcacgcgttgcacagcgt 11062
>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 116371 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 405 cggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagcgt 463 ||||||||||||| ||||| |||| | || ||| |||||||||||||||||||||||| Sbjct: 35722 cggtactccggcagcagcctcccttgcctgtaccgcacgccgcacgcgttgcacagcgt 35780
>dbj|AK101421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038C04, full insert sequence Length = 1452 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 402 ggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagc 461 |||| ||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||| Sbjct: 940 ggcctgtattccggcagcagcctgccagacttgaacctcacaccgcaagcattgcatagc 881 Query: 462 gtcttgggcccca 474 ||||| ||||||| Sbjct: 880 gtcttaggcccca 868
>emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 83015 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 402 ggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagc 461 |||| ||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||| Sbjct: 41574 ggcctgtattccggcagcagcctgccagacttgaacctcacaccgcaagcattgcatagc 41633 Query: 462 gtcttgggcccca 474 ||||| ||||||| Sbjct: 41634 gtcttaggcccca 41646
>emb|BX000561.2|CNS08CE7 Oryza sativa chromosome 12, . BAC OJ1014_F06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104849 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 402 ggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagc 461 |||| ||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||| Sbjct: 69430 ggcctgtattccggcagcagcctgccagacttgaacctcacaccgcaagcattgcatagc 69489 Query: 462 gtcttgggcccca 474 ||||| ||||||| Sbjct: 69490 gtcttaggcccca 69502
>ref|NM_122484.1| Arabidopsis thaliana transcription factor AT5G25830 mRNA, complete cds Length = 996 Score = 54.0 bits (27), Expect = 5e-04 Identities = 87/107 (81%) Strand = Plus / Minus Query: 396 gccgccggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttg 455 ||||| ||||| ||||||||||| | || || || ||| |||| || ||||| |||||| Sbjct: 788 gccgcgggccgatactccggcactaaacgtcccgatttgtacctaacaccgcaagcgttg 729 Query: 456 cacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 |||| |||||| || |||| ||||| || ||||||||||| ||||| Sbjct: 728 cacaacgtcttcgggcccattgggcctgtccgccattgcggagtctt 682
>gb|AC005405.1|AC005405 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence Length = 94362 Score = 54.0 bits (27), Expect = 5e-04 Identities = 87/107 (81%) Strand = Plus / Plus Query: 396 gccgccggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttg 455 ||||| ||||| ||||||||||| | || || || ||| |||| || ||||| |||||| Sbjct: 37516 gccgcgggccgatactccggcactaaacgtcccgatttgtacctaacaccgcaagcgttg 37575 Query: 456 cacagcgtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 |||| |||||| || |||| ||||| || ||||||||||| ||||| Sbjct: 37576 cacaacgtcttcgggcccattgggcctgtccgccattgcggagtctt 37622
>ref|XM_473351.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1179 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||| |||||||| || | ||||| || |||||| | | || Sbjct: 1059 gaaggtggggctgcacgccgggcggtactcggggaggagccggccggacttgtagcggac 1000 Query: 443 gccgcacgcgttgcacagcgtcttgg 468 ||||||||||||||| |||||||||| Sbjct: 999 gccgcacgcgttgcagagcgtcttgg 974
>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence Length = 143585 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||| |||||||| || | ||||| || |||||| | | || Sbjct: 43440 gaaggtggggctgcacgccgggcggtactcggggaggagccggccggacttgtagcggac 43381 Query: 443 gccgcacgcgttgcacagcgtcttgg 468 ||||||||||||||| |||||||||| Sbjct: 43380 gccgcacgcgttgcagagcgtcttgg 43355
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||| |||||||| || | ||||| || |||||| | | || Sbjct: 26975739 gaaggtggggctgcacgccgggcggtactcggggaggagccggccggacttgtagcggac 26975680 Query: 443 gccgcacgcgttgcacagcgtcttgg 468 ||||||||||||||| |||||||||| Sbjct: 26975679 gccgcacgcgttgcagagcgtcttgg 26975654 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 265 cggggccggggccagccgccgccgc 289 |||||||||||| |||||||||||| Sbjct: 12599318 cggggccggggctagccgccgccgc 12599294
>dbj|AK119611.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F12, full insert sequence Length = 2000 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||| |||||||| || | ||||| || |||||| | | || Sbjct: 1275 gaaggtggggctgcacgccgggcggtactcggggaggagccggccggacttgtagcggac 1216 Query: 443 gccgcacgcgttgcacagcgtcttgg 468 ||||||||||||||| |||||||||| Sbjct: 1215 gccgcacgcgttgcagagcgtcttgg 1190
>dbj|AK099144.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055K24, full insert sequence Length = 1586 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||| |||||||| || | ||||| || |||||| | | || Sbjct: 1179 gaaggtggggctgcacgccgggcggtactcggggaggagccggccggacttgtagcggac 1120 Query: 443 gccgcacgcgttgcacagcgtcttgg 468 ||||||||||||||| |||||||||| Sbjct: 1119 gccgcacgcgttgcagagcgtcttgg 1094
>dbj|AK060574.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D04, full insert sequence Length = 1623 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagccgccctgacttgaacctcac 442 |||||||||||| |||||| |||||||| || | ||||| || |||||| | | || Sbjct: 1194 gaaggtggggctgcacgccgggcggtactcggggaggagccggccggacttgtagcggac 1135 Query: 443 gccgcacgcgttgcacagcgtcttgg 468 ||||||||||||||| |||||||||| Sbjct: 1134 gccgcacgcgttgcagagcgtcttgg 1109
>dbj|AB107691.1| Nicotiana tabacum AGP3 mRNA for AG-motif binding protein-3, complete cds Length = 1144 Score = 50.1 bits (25), Expect = 0.007 Identities = 82/101 (81%) Strand = Plus / Minus Query: 402 ggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcacagc 461 |||||||||||||| || ||||| || || |||||||| || || || || ||||| ||| Sbjct: 782 ggccggtactccggtacaagccggcccgatttgaacctaactccacaagcattgcagagc 723 Query: 462 gtcttgggccccagcgggcccgttcgccattgcggcgtctt 502 || || || || || || || |||| ||||||||||||||| Sbjct: 722 gtttttgggcctagaggtccagttctccattgcggcgtctt 682
>ref|XM_467029.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1524 Score = 48.1 bits (24), Expect = 0.028 Identities = 42/48 (87%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtg 370 |||||||| |||||||| ||| | ||||||||||| ||||||||||| Sbjct: 1214 ctccttcttgcggcgcatctcgagcaccttgcggtgggagttggagtg 1167 Score = 44.1 bits (22), Expect = 0.44 Identities = 58/70 (82%) Strand = Plus / Minus Query: 399 gccggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcac 458 ||||||||||||||||| | || || || |||||| | | |||||||| |||||||| Sbjct: 1138 gccggccggtactccgggaggaggcggcccgacttgtagcggacgccgcaggcgttgcag 1079 Query: 459 agcgtcttgg 468 |||||||||| Sbjct: 1078 agcgtcttgg 1069
>dbj|AP004839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519A12 Length = 156676 Score = 48.1 bits (24), Expect = 0.028 Identities = 42/48 (87%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtg 370 |||||||| |||||||| ||| | ||||||||||| ||||||||||| Sbjct: 24376 ctccttcttgcggcgcatctcgagcaccttgcggtgggagttggagtg 24329 Score = 44.1 bits (22), Expect = 0.44 Identities = 58/70 (82%) Strand = Plus / Minus Query: 399 gccggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcac 458 ||||||||||||||||| | || || || |||||| | | |||||||| |||||||| Sbjct: 24300 gccggccggtactccgggaggaggcggcccgacttgtagcggacgccgcaggcgttgcag 24241 Query: 459 agcgtcttgg 468 |||||||||| Sbjct: 24240 agcgtcttgg 24231
>dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0030D07 Length = 133321 Score = 48.1 bits (24), Expect = 0.028 Identities = 42/48 (87%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtg 370 |||||||| |||||||| ||| | ||||||||||| ||||||||||| Sbjct: 80803 ctccttcttgcggcgcatctcgagcaccttgcggtgggagttggagtg 80756 Score = 44.1 bits (22), Expect = 0.44 Identities = 58/70 (82%) Strand = Plus / Minus Query: 399 gccggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcac 458 ||||||||||||||||| | || || || |||||| | | |||||||| |||||||| Sbjct: 80727 gccggccggtactccgggaggaggcggcccgacttgtagcggacgccgcaggcgttgcag 80668 Query: 459 agcgtcttgg 468 |||||||||| Sbjct: 80667 agcgtcttgg 80658
>dbj|AK109477.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C09, full insert sequence Length = 1524 Score = 48.1 bits (24), Expect = 0.028 Identities = 42/48 (87%) Strand = Plus / Minus Query: 323 ctccttctggcggcgcagctccatgaccttgcggtgagagttggagtg 370 |||||||| |||||||| ||| | ||||||||||| ||||||||||| Sbjct: 1214 ctccttcttgcggcgcatctcgagcaccttgcggtgggagttggagtg 1167 Score = 44.1 bits (22), Expect = 0.44 Identities = 58/70 (82%) Strand = Plus / Minus Query: 399 gccggccggtactccggcaccagccgccctgacttgaacctcacgccgcacgcgttgcac 458 ||||||||||||||||| | || || || |||||| | | |||||||| |||||||| Sbjct: 1138 gccggccggtactccgggaggaggcggcccgacttgtagcggacgccgcaggcgttgcag 1079 Query: 459 agcgtcttgg 468 |||||||||| Sbjct: 1078 agcgtcttgg 1069
>ref|NM_196843.1| Oryza sativa (japonica cultivar-group) putative transcription factor (OSJNBb0011A08.7), mRNA Length = 1587 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 402 ggccggtactccggcaccagccg 424 ||||||||||||||||||||||| Sbjct: 1484 ggccggtactccggcaccagccg 1462 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 401 cggccggtactccggcaccagc 422 |||||||||||||||||||||| Sbjct: 315 cggccggtactccggcaccagc 294
>ref|XM_380886.1| Gibberella zeae PH-1 chromosome 1 CGPB_FUSSO Cutinase gene palindrome-binding protein (PBP) (FG00710.1) partial mRNA Length = 1347 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 450 gcgttgcacagcgtcttgggccc 472 ||||||||||||||||||||||| Sbjct: 1268 gcgttgcacagcgtcttgggccc 1246
>gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete sequence Length = 117157 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 402 ggccggtactccggcaccagccg 424 ||||||||||||||||||||||| Sbjct: 24741 ggccggtactccggcaccagccg 24719 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 401 cggccggtactccggcaccagc 422 |||||||||||||||||||||| Sbjct: 23489 cggccggtactccggcaccagc 23468
>ref|XM_575921.1| PREDICTED: Rattus norvegicus similar to Sfrs4 protein (LOC362612), mRNA Length = 2160 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 266 ggggccggggccagccgccgccg 288 ||||||||||||||||||||||| Sbjct: 75 ggggccggggccagccgccgccg 97
>ref|XM_475944.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 840 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 444 ccgcacgcgttgcacagcgtcttggg 469 ||||||||||||||||||| |||||| Sbjct: 539 ccgcacgcgttgcacagcgacttggg 514
>ref|NM_185085.1| Oryza sativa (japonica cultivar-group), mRNA Length = 411 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 444 ccgcacgcgttgcacagcgtcttggg 469 ||||||||||||||||||| |||||| Sbjct: 158 ccgcacgcgttgcacagcgacttggg 133
>gb|AC096781.6| Oryza sativa chromosome 10 BAC OSJNBa0013H08 genomic sequence, complete sequence Length = 58293 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 401 cggccggtactccggcaccagc 422 |||||||||||||||||||||| Sbjct: 57390 cggccggtactccggcaccagc 57369
>dbj|AK101287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033F09, full insert sequence Length = 1149 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 444 ccgcacgcgttgcacagcgtcttggg 469 ||||||||||||||||||| |||||| Sbjct: 588 ccgcacgcgttgcacagcgacttggg 563
>dbj|AK073709.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058P14, full insert sequence Length = 1116 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 444 ccgcacgcgttgcacagcgtcttggg 469 ||||||||||||||||||| |||||| Sbjct: 456 ccgcacgcgttgcacagcgacttggg 431
>dbj|AK073464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C20, full insert sequence Length = 1116 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 444 ccgcacgcgttgcacagcgtcttggg 469 ||||||||||||||||||| |||||| Sbjct: 588 ccgcacgcgttgcacagcgacttggg 563
>ref|XM_493824.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 816 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 gccgcacgcgttgcacagcgt 463 ||||||||||||||||||||| Sbjct: 642 gccgcacgcgttgcacagcgt 622
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagcc 423 |||| ||||||| | || ||||||||||||||||| ||||| Sbjct: 64606 gaagctggggctcgtcgacggccggtactccggcagcagcc 64646
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 331 ggcggcgcagctccatgaccttgcg 355 ||||||||||||||||||| ||||| Sbjct: 117256 ggcggcgcagctccatgacattgcg 117280
>emb|AL663066.12| Mouse DNA sequence from clone RP23-416K12 on chromosome 11 Contains the 5' end of a novel genes, an H+ transporting ATPase V1 subunit G isoform 1 (Atp6v1g1) pseudogene, an upstream transcription factor 1 (Usf1) pseudogene, the 5' end of the Ssh2 gene for slingshot homolog 2 (Drosophila) and a CpG island, complete sequence Length = 160589 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 44 taattaacaaaaagatgcaagatat 68 ||||||| ||||||||||||||||| Sbjct: 101521 taattaaaaaaaagatgcaagatat 101497
>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1004C08, complete sequence Length = 133090 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 gccgcacgcgttgcacagcgt 463 ||||||||||||||||||||| Sbjct: 121207 gccgcacgcgttgcacagcgt 121187
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagcc 423 |||| ||||||| | || ||||||||||||||||| ||||| Sbjct: 4413243 gaagctggggctcgtcgacggccggtactccggcagcagcc 4413283 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gccgccgccgcgtcgagacg 298 |||||||||||||||||||| Sbjct: 22430577 gccgccgccgcgtcgagacg 22430596
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 383 gaaggtggggcttgccgccggccggtactccggcaccagcc 423 |||| ||||||| | || ||||||||||||||||| ||||| Sbjct: 4421937 gaagctggggctcgtcgacggccggtactccggcagcagcc 4421977 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gccgccgccgcgtcgagacg 298 |||||||||||||||||||| Sbjct: 22740488 gccgccgccgcgtcgagacg 22740507
>emb|AL731633.2|OSJN00280 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0096E05, complete sequence Length = 129908 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 265 cggggccggggccagccgccgccgc 289 |||||||||||| |||||||||||| Sbjct: 14304 cggggccggggctagccgccgccgc 14280
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, clone:P0043E01 Length = 154128 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 gccgcacgcgttgcacagcgt 463 ||||||||||||||||||||| Sbjct: 125618 gccgcacgcgttgcacagcgt 125638
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 caaattaattaacaaaaaga 58 |||||||||||||||||||| Sbjct: 2299528 caaattaattaacaaaaaga 2299547
>gb|AC165962.4| Mus musculus BAC clone RP23-362B7 from chromosome 17, complete sequence Length = 179745 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ggagtgttgtgtgagcagga 384 |||||||||||||||||||| Sbjct: 66585 ggagtgttgtgtgagcagga 66566
>gb|AC125544.4| Mus musculus BAC clone RP23-364A24 from chromosome 17, complete sequence Length = 159298 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggagtgttgtgtgagcagga 384 |||||||||||||||||||| Sbjct: 58660 ggagtgttgtgtgagcagga 58679
>gb|BC019437.1| Mus musculus splicing factor, arginine/serine-rich 4 (SRp75), mRNA (cDNA clone MGC:30385 IMAGE:4018178), complete cds Length = 2204 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 ggggccggggccagccgccgccgc 289 ||||||||||||||| |||||||| Sbjct: 58 ggggccggggccagctgccgccgc 81
>gb|AC134528.6| Mus musculus BAC clone RP24-502G8 from chromosome 10, complete sequence Length = 166393 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gagcaggaaggtggggcttg 396 |||||||||||||||||||| Sbjct: 7277 gagcaggaaggtggggcttg 7296
>gb|AC141923.27| Medicago truncatula clone mth2-7f19, complete sequence Length = 116685 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 caaattaattaacaaaaaga 58 |||||||||||||||||||| Sbjct: 26962 caaattaattaacaaaaaga 26981
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gccgccgccgcgtcgagacg 298 |||||||||||||||||||| Sbjct: 22239 gccgccgccgcgtcgagacg 22220
>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete sequence Length = 168549 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aacaaattaattaacaaaaa 56 |||||||||||||||||||| Sbjct: 120382 aacaaattaattaacaaaaa 120401
>emb|AL451054.22| Human DNA sequence from clone RP11-275O4 on chromosome 1 Contains two tubulin beta pseudogenes, a novel gene, the 5' end of a novel protein (MGC42493) and four CpG islands, complete sequence Length = 147567 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aacaaattaattaacaaaaa 56 |||||||||||||||||||| Sbjct: 143052 aacaaattaattaacaaaaa 143033
>emb|AL513025.13| Mouse DNA sequence from clone RP23-235O1 on chromosome 13 Contains the 5' end of a novel gene, the E2f3 gene for E2F transcription factor 3, a novel gene and two CpG islands, complete sequence Length = 197940 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gattttgcaaagggatctag 138 |||||||||||||||||||| Sbjct: 143569 gattttgcaaagggatctag 143588
>emb|AL646050.7| Mouse DNA sequence from clone RP23-460G5 on chromosome 11 Contains a ribosomal protein L7 (Rpl7) pseudogene and a CpG island, complete sequence Length = 164018 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aacaaattaattaacaaaaa 56 |||||||||||||||||||| Sbjct: 63628 aacaaattaattaacaaaaa 63647
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 287 cgcgtcgagacggtggctgccgcggatgagaacgag 322 ||||||||||||||| | || ||||| ||||||||| Sbjct: 4531394 cgcgtcgagacggtgtcggctgcggaagagaacgag 4531359
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 gccagccgccgccgcgtcga 294 |||||||||||||||||||| Sbjct: 2333764 gccagccgccgccgcgtcga 2333783
>dbj|AK156989.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830111O06 product:splicing factor, arginine/serine-rich 4 (SRp75), full insert sequence Length = 2164 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 ggggccggggccagccgccgccgc 289 ||||||||||||||| |||||||| Sbjct: 33 ggggccggggccagctgccgccgc 56
>emb|BX324145.12| Zebrafish DNA sequence from clone CH211-207C13 in linkage group 16, complete sequence Length = 196595 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aacaaattaattaacaaaaa 56 |||||||||||||||||||| Sbjct: 125203 aacaaattaattaacaaaaa 125222
>dbj|AK077648.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730499P16 product:splicing factor, arginine/serine-rich 4 (SRp75), full insert sequence Length = 2215 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 ggggccggggccagccgccgccgc 289 ||||||||||||||| |||||||| Sbjct: 84 ggggccggggccagctgccgccgc 107
>dbj|AK075769.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810005H01 product:splicing factor, arginine/serine-rich 4 (SRp75), full insert sequence Length = 2204 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 ggggccggggccagccgccgccgc 289 ||||||||||||||| |||||||| Sbjct: 66 ggggccggggccagctgccgccgc 89
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggatctagctagctagctac 150 |||||||||||||||||||| Sbjct: 20964069 ggatctagctagctagctac 20964088
>dbj|AP003368.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1100D10 Length = 152997 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 ggccagccgccgccgcgtcg 293 |||||||||||||||||||| Sbjct: 106169 ggccagccgccgccgcgtcg 106150
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ggccggtactccggcaccagccgc 425 |||||||||| ||||||||||||| Sbjct: 2208743 ggccggtactgcggcaccagccgc 2208766
>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0431A03 Length = 149500 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggatctagctagctagctac 150 |||||||||||||||||||| Sbjct: 30244 ggatctagctagctagctac 30263
>dbj|AK109280.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B05, full insert sequence Length = 854 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gccgccgccgcgtcgagacg 298 |||||||||||||||||||| Sbjct: 186 gccgccgccgcgtcgagacg 167
>emb|BX004817.8| Zebrafish DNA sequence from clone DKEY-169B7, complete sequence Length = 174174 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gaacaaattaattaacaaaa 55 |||||||||||||||||||| Sbjct: 941 gaacaaattaattaacaaaa 922
>emb|AL607088.26| Mouse DNA sequence from clone RP23-13A13 on chromosome 4, complete sequence Length = 103925 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 ggggccggggccagccgccgccgc 289 ||||||||||||||| |||||||| Sbjct: 22368 ggggccggggccagctgccgccgc 22391
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 ccgccgccgcgtcgagacggtggc 303 ||||||||||| |||||||||||| Sbjct: 3123374 ccgccgccgcgccgagacggtggc 3123397
>gb|AC142105.7| Mus musculus BAC clone RP24-240E7 from chromosome 10, complete sequence Length = 163869 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gagcaggaaggtggggcttg 396 |||||||||||||||||||| Sbjct: 122705 gagcaggaaggtggggcttg 122724 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,840,387 Number of Sequences: 3902068 Number of extensions: 3840387 Number of successful extensions: 83960 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81649 Number of HSP's gapped (non-prelim): 2303 length of query: 502 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 480 effective length of database: 17,147,199,772 effective search space: 8230655890560 effective search space used: 8230655890560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
