ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
2dbj|AK065998.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 74 5e-10
4emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb... 74 5e-10
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 70 7e-09
7emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 70 7e-09
8gb|AC139941.9| Mus musculus chromosome 13, clone RP23-78M22, com... 46 0.11
9gb|AC124371.2| Mus musculus BAC clone RP24-556P1 from chromosome... 42 1.7
10gb|AC164430.3| Mus musculus BAC clone RP23-441D9 from chromosome... 40 6.6
11ref|XM_548735.2| PREDICTED: Canis familiaris similar to pericent... 40 6.6
12emb|AL445705.8| Human DNA sequence from clone RP5-996C2 on chrom... 40 6.6
13gb|AC091051.6| Homo sapiens chromosome 11, clone RP11-423H12, co... 40 6.6
14gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park C... 40 6.6
15emb|AL359384.17| Human DNA sequence from clone RP11-58O1 on chro... 40 6.6
16gb|AC131734.4| Mus musculus BAC clone RP23-99I11 from 9, complet... 40 6.6

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                          
Query: 395    ttgagcttcagctcctcgaggctcctggcgaacacctgctccagccaggcctgcagaggg 454
              |||||||||||||| || ||||||||||| || |||||||||||||||| ||||| ||||
Sbjct: 224417 ttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccaggtctgcacaggg 224358

               
Query: 455    c 455
              |
Sbjct: 224357 c 224357



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>dbj|AK065998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049L21, full
            insert sequence
          Length = 3856

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 395  ttgagcttcagctcctcgaggctcctggcgaacacctgctccagccaggcctgcagaggg 454
            |||||||||||||| || ||||||||||| || |||||||||||||||| ||||| ||||
Sbjct: 3480 ttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccaggtctgcacaggg 3421

             
Query: 455  c 455
            |
Sbjct: 3420 c 3420



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                          
Query: 395    ttgagcttcagctcctcgaggctcctggcgaacacctgctccagccaggcctgcagaggg 454
              |||||||||||||| || ||||||||||| || |||||||||||||||| ||||| ||||
Sbjct: 224417 ttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccaggtctgcacaggg 224358

               
Query: 455    c 455
              |
Sbjct: 224357 c 224357



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>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 96667

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 395   ttgagcttcagctcctcgaggctcctggcgaacacctgctccagccaggcctgcagaggg 454
             |||||||||||||| || ||||||||||| || |||||||||||||||| ||||| ||||
Sbjct: 50839 ttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccaggtctgcacaggg 50898

              
Query: 455   c 455
             |
Sbjct: 50899 c 50899



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                 
Query: 393    gcttgagcttcagctcctcgaggctcctggcgaacacctgctccagccagg 443
              |||||||||||||||| || ||||||||||| || ||||||||||||||||
Sbjct: 197947 gcttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccagg 197897



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                 
Query: 393    gcttgagcttcagctcctcgaggctcctggcgaacacctgctccagccagg 443
              |||||||||||||||| || ||||||||||| || ||||||||||||||||
Sbjct: 197947 gcttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccagg 197897



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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                 
Query: 393    gcttgagcttcagctcctcgaggctcctggcgaacacctgctccagccagg 443
              |||||||||||||||| || ||||||||||| || ||||||||||||||||
Sbjct: 107046 gcttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccagg 107096



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>gb|AC139941.9| Mus musculus chromosome 13, clone RP23-78M22, complete sequence
          Length = 236536

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 55     agtcaaaatctatacacttgcca 77
              |||||||||||||||||||||||
Sbjct: 195920 agtcaaaatctatacacttgcca 195898



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>gb|AC124371.2| Mus musculus BAC clone RP24-556P1 from chromosome 8, complete sequence
          Length = 158228

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    tctatacacttgccaatatat 83
             |||||||||||||||||||||
Sbjct: 95769 tctatacacttgccaatatat 95789



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>gb|AC164430.3| Mus musculus BAC clone RP23-441D9 from chromosome 9, complete sequence
          Length = 205185

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    ctgctccagccaggcctgca 449
              ||||||||||||||||||||
Sbjct: 136566 ctgctccagccaggcctgca 136585



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>ref|XM_548735.2| PREDICTED: Canis familiaris similar to pericentrin 2 (LOC491613),
            mRNA
          Length = 9444

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 427  cacctgctccagccaggcctgcag 450
            |||||||||||||| |||||||||
Sbjct: 7443 cacctgctccagccgggcctgcag 7420



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>emb|AL445705.8| Human DNA sequence from clone RP5-996C2 on chromosome 20 Contains part
             of a novel gene (KIAA0964), complete sequence
          Length = 57930

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   ctccagccaggcctgcagag 452
             ||||||||||||||||||||
Sbjct: 13043 ctccagccaggcctgcagag 13024



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>gb|AC091051.6| Homo sapiens chromosome 11, clone RP11-423H12, complete sequence
          Length = 177363

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    atcatatattggcaaagaaatcaa 44
             |||||||||||||||||| |||||
Sbjct: 87697 atcatatattggcaaagatatcaa 87720



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>gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 202478

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   tgcttgagcttcagctcctc 411
             ||||||||||||||||||||
Sbjct: 17779 tgcttgagcttcagctcctc 17760



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>emb|AL359384.17| Human DNA sequence from clone RP11-58O1 on chromosome 10 Contains the
             5' end of a novel gene, the gene for transmembrane
             receptor Unc5H2 (UNC5H2), the 5' end of the gene for
             equilibrative nucleoside transporter 3 (ENT3) and a CpG
             island, complete sequence
          Length = 122288

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 432   gctccagccaggcctgcagagggc 455
             |||||||||||||||||| |||||
Sbjct: 45686 gctccagccaggcctgcacagggc 45663



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>gb|AC131734.4| Mus musculus BAC clone RP23-99I11 from 9, complete sequence
          Length = 212771

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   ctgctccagccaggcctgca 449
             ||||||||||||||||||||
Sbjct: 78431 ctgctccagccaggcctgca 78450


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,796,623
Number of Sequences: 3902068
Number of extensions: 3796623
Number of successful extensions: 65898
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65760
Number of HSP's gapped (non-prelim): 138
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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