Clone Name | rbart24e01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 395 ttgagcttcagctcctcgaggctcctggcgaacacctgctccagccaggcctgcagaggg 454 |||||||||||||| || ||||||||||| || |||||||||||||||| ||||| |||| Sbjct: 224417 ttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccaggtctgcacaggg 224358 Query: 455 c 455 | Sbjct: 224357 c 224357
>dbj|AK065998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049L21, full insert sequence Length = 3856 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 395 ttgagcttcagctcctcgaggctcctggcgaacacctgctccagccaggcctgcagaggg 454 |||||||||||||| || ||||||||||| || |||||||||||||||| ||||| |||| Sbjct: 3480 ttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccaggtctgcacaggg 3421 Query: 455 c 455 | Sbjct: 3420 c 3420
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 395 ttgagcttcagctcctcgaggctcctggcgaacacctgctccagccaggcctgcagaggg 454 |||||||||||||| || ||||||||||| || |||||||||||||||| ||||| |||| Sbjct: 224417 ttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccaggtctgcacaggg 224358 Query: 455 c 455 | Sbjct: 224357 c 224357
>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 96667 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 395 ttgagcttcagctcctcgaggctcctggcgaacacctgctccagccaggcctgcagaggg 454 |||||||||||||| || ||||||||||| || |||||||||||||||| ||||| |||| Sbjct: 50839 ttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccaggtctgcacaggg 50898 Query: 455 c 455 | Sbjct: 50899 c 50899
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 69.9 bits (35), Expect = 7e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 393 gcttgagcttcagctcctcgaggctcctggcgaacacctgctccagccagg 443 |||||||||||||||| || ||||||||||| || |||||||||||||||| Sbjct: 197947 gcttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccagg 197897
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 69.9 bits (35), Expect = 7e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 393 gcttgagcttcagctcctcgaggctcctggcgaacacctgctccagccagg 443 |||||||||||||||| || ||||||||||| || |||||||||||||||| Sbjct: 197947 gcttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccagg 197897
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 69.9 bits (35), Expect = 7e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 393 gcttgagcttcagctcctcgaggctcctggcgaacacctgctccagccagg 443 |||||||||||||||| || ||||||||||| || |||||||||||||||| Sbjct: 107046 gcttgagcttcagctcgtcaaggctcctggcaaaaacctgctccagccagg 107096
>gb|AC139941.9| Mus musculus chromosome 13, clone RP23-78M22, complete sequence Length = 236536 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 55 agtcaaaatctatacacttgcca 77 ||||||||||||||||||||||| Sbjct: 195920 agtcaaaatctatacacttgcca 195898
>gb|AC124371.2| Mus musculus BAC clone RP24-556P1 from chromosome 8, complete sequence Length = 158228 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 tctatacacttgccaatatat 83 ||||||||||||||||||||| Sbjct: 95769 tctatacacttgccaatatat 95789
>gb|AC164430.3| Mus musculus BAC clone RP23-441D9 from chromosome 9, complete sequence Length = 205185 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 ctgctccagccaggcctgca 449 |||||||||||||||||||| Sbjct: 136566 ctgctccagccaggcctgca 136585
>ref|XM_548735.2| PREDICTED: Canis familiaris similar to pericentrin 2 (LOC491613), mRNA Length = 9444 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 cacctgctccagccaggcctgcag 450 |||||||||||||| ||||||||| Sbjct: 7443 cacctgctccagccgggcctgcag 7420
>emb|AL445705.8| Human DNA sequence from clone RP5-996C2 on chromosome 20 Contains part of a novel gene (KIAA0964), complete sequence Length = 57930 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 ctccagccaggcctgcagag 452 |||||||||||||||||||| Sbjct: 13043 ctccagccaggcctgcagag 13024
>gb|AC091051.6| Homo sapiens chromosome 11, clone RP11-423H12, complete sequence Length = 177363 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 atcatatattggcaaagaaatcaa 44 |||||||||||||||||| ||||| Sbjct: 87697 atcatatattggcaaagatatcaa 87720
>gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 202478 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 tgcttgagcttcagctcctc 411 |||||||||||||||||||| Sbjct: 17779 tgcttgagcttcagctcctc 17760
>emb|AL359384.17| Human DNA sequence from clone RP11-58O1 on chromosome 10 Contains the 5' end of a novel gene, the gene for transmembrane receptor Unc5H2 (UNC5H2), the 5' end of the gene for equilibrative nucleoside transporter 3 (ENT3) and a CpG island, complete sequence Length = 122288 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 432 gctccagccaggcctgcagagggc 455 |||||||||||||||||| ||||| Sbjct: 45686 gctccagccaggcctgcacagggc 45663
>gb|AC131734.4| Mus musculus BAC clone RP23-99I11 from 9, complete sequence Length = 212771 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 ctgctccagccaggcctgca 449 |||||||||||||||||||| Sbjct: 78431 ctgctccagccaggcctgca 78450 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,796,623 Number of Sequences: 3902068 Number of extensions: 3796623 Number of successful extensions: 65898 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65760 Number of HSP's gapped (non-prelim): 138 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)