>TUB_HUMAN (P50607) Tubby protein homolog|
          Length = 506

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -1

Query: 185 ASKSESEMCKHGQESVSVLAKKPIMNADAGHTSSVIVPNMNVPHQRIKNKDCNTHEPLL 9
           AS S  E     QE  +V  +  ++        SVIVP MN+ H+R+  +  N HE LL
Sbjct: 353 ASSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVSIRPRNEHETLL 411

>TUB_RAT (O88808) Tubby protein homolog|
          Length = 505

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -1

Query: 185 ASKSESEMCKHGQESVSVLAKKPIMNADAGHTSSVIVPNMNVPHQRIKNKDCNTHEPLL 9
           AS S  E     QE  +V  +  ++        SVIVP MN+ H+R+  +  N HE LL
Sbjct: 352 ASSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLL 410

>TUB_MOUSE (P50586) Tubby protein|
          Length = 505

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -1

Query: 185 ASKSESEMCKHGQESVSVLAKKPIMNADAGHTSSVIVPNMNVPHQRIKNKDCNTHEPLL 9
           AS S  E     QE  +V  +  ++        SVIVP MN+ H+R+  +  N HE LL
Sbjct: 352 ASSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLL 410

>TULP3_MOUSE (O88413) Tubby-related protein 3 (Tubby-like protein 3)|
          Length = 460

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 149 QESVSVLAKKPIMNADAGHTSSVIVPNMNVPHQRIKNKDCNTHEPLL 9
           QE  ++  +  ++        SVI+P MN+ H+RI  +  N HE LL
Sbjct: 319 QELAAICYETNVLGFKGPRKMSVIIPGMNMNHERIPFRPRNEHESLL 365

>NU170_YEAST (P38181) Nucleoporin NUP170 (Nuclear pore protein NUP170)|
          Length = 1502

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 191 SLASKSESEMCKHGQESVSVLAKKPIMNADA-GHTSSVIVPNMNVPHQRIKNKDCNTHEP 15
           S A+K++ +   H   S  +    P+M A A G TS  I PNM+  ++ I+     T +P
Sbjct: 42  SSATKAQQQPT-HILNSYPITGSNPLMRASAMGATSGSINPNMSNMNEHIRVSGMGTSKP 100

Query: 14  L 12
           L
Sbjct: 101 L 101

>TULP3_HUMAN (O75386) Tubby-related protein 3 (Tubby-like protein 3)|
          Length = 442

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 149 QESVSVLAKKPIMNADAGHTSSVIVPNMNVPHQRIKNKDCNTHEPLL 9
           QE  ++  +  ++        SVI+P M + H++I  +  N H+ LL
Sbjct: 301 QELAAISYETNVLGFKGPRKMSVIIPGMTLNHKQIPYQPQNNHDSLL 347

>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation|
            protein 2C (EC 1.14.11.-) (Jumonji domain-containing
            protein 1C)
          Length = 2350

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -1

Query: 191  SLASKSESEMCKHGQESVSVLAKKPIMNADAGHTSSVIVPNMNVPHQRIKNK 36
            S+   S+  +C+      +   K   +  +AG T  +I+PN+N+    +K++
Sbjct: 1131 SVPLASKDRVCERSSSGAN---KTDYLKPEAGETGRIILPNVNLESAHVKSE 1179


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,200,414
Number of Sequences: 219361
Number of extensions: 652930
Number of successful extensions: 1423
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)