Clone Name | rbart24d11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC021654.25| Homo sapiens 3 BAC RP11-192K2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167942 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 31 cagtctttattttttattctttga 54 |||||||||||||||||||||||| Sbjct: 134359 cagtctttattttttattctttga 134336
>gb|AC025432.4| Homo sapiens chromosome 3 clone CTB-124C22, complete sequence Length = 69458 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Plus Query: 31 cagtctttattttttattctttga 54 |||||||||||||||||||||||| Sbjct: 55786 cagtctttattttttattctttga 55809
>gb|CP000318.1| Polaromonas sp. JS666 plasmid 2, complete sequence Length = 338007 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 332 ccttgcgggccagccggtcgaa 353 |||||||||||||||||||||| Sbjct: 335026 ccttgcgggccagccggtcgaa 335047
>emb|BX284628.6| Zebrafish DNA sequence from clone DKEY-205I14 in linkage group 20, complete sequence Length = 92850 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 36 tttattttttattctttgatga 57 |||||||||||||||||||||| Sbjct: 77723 tttattttttattctttgatga 77702
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 ccttgcgggccagccggtcga 352 ||||||||||||||||||||| Sbjct: 2725408 ccttgcgggccagccggtcga 2725428
>gb|AC149352.2| Phakopsora pachyrhizi clone JGIAFNA-41F10, complete sequence Length = 40148 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 tctttattttttattctttgatga 57 ||||| |||||||||||||||||| Sbjct: 22087 tcttttttttttattctttgatga 22064
>gb|AC115508.5| Rattus norvegicus 2 BAC CH230-355B17 (Children's Hospital Oakland Research Institute) complete sequence Length = 209019 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tacagtctttattttttatt 48 |||||||||||||||||||| Sbjct: 161200 tacagtctttattttttatt 161219
>gb|AC141477.4| Mus musculus BAC clone RP23-386J14 from chromosome 10, complete sequence Length = 213720 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ttacagtctttattttttat 47 |||||||||||||||||||| Sbjct: 27268 ttacagtctttattttttat 27287
>gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, complete sequence Length = 180335 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cagtctttattttttattct 50 |||||||||||||||||||| Sbjct: 161246 cagtctttattttttattct 161227
>gb|AC146244.3| Pan troglodytes BAC clone RP43-27M14 from 7, complete sequence Length = 161963 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 tattttttattctttgatga 57 |||||||||||||||||||| Sbjct: 5820 tattttttattctttgatga 5839
>gb|AC116183.6| Rattus norvegicus 2 BAC CH230-24G20 (Children's Hospital Oakland Research Institute) complete sequence Length = 238137 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tacagtctttattttttatt 48 |||||||||||||||||||| Sbjct: 22232 tacagtctttattttttatt 22251
>gb|AC139572.4| Mus musculus BAC clone RP24-196P9 from chromosome 7, complete sequence Length = 165198 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 tttatctgtaaataatagta 237 |||||||||||||||||||| Sbjct: 86052 tttatctgtaaataatagta 86071
>ref|XM_651043.1| Entamoeba histolytica HM-1:IMSS WD repeat protein (17.t00046) partial mRNA Length = 1926 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 tctttgatgaggcacattca 67 |||||||||||||||||||| Sbjct: 449 tctttgatgaggcacattca 468
>gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence Length = 201304 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ctttattttttattctttga 54 |||||||||||||||||||| Sbjct: 67753 ctttattttttattctttga 67734
>gb|AC110541.12| Mus musculus chromosome 7, clone RP23-105F19, complete sequence Length = 213499 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tttattttttattctttgat 55 |||||||||||||||||||| Sbjct: 182596 tttattttttattctttgat 182577
>gb|AC002463.1| Homo sapiens BAC clone CTA-302F4 from 7, complete sequence Length = 135684 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tattttttattctttgatga 57 |||||||||||||||||||| Sbjct: 45341 tattttttattctttgatga 45322
>gb|AC162800.2| Mus musculus BAC clone RP24-173D2 from chromosome 17, complete sequence Length = 199202 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 attttttattctttgatgag 58 |||||||||||||||||||| Sbjct: 125910 attttttattctttgatgag 125891
>gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580p20 map 10, complete sequence Length = 185664 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ttacagtctttattttttat 47 |||||||||||||||||||| Sbjct: 56791 ttacagtctttattttttat 56772
>gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, complete sequence Length = 214913 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ttacagtctttattttttat 47 |||||||||||||||||||| Sbjct: 44217 ttacagtctttattttttat 44198
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 agtctttattttttattctttgat 55 ||||||||| |||||||||||||| Sbjct: 2183681 agtctttatcttttattctttgat 2183704
>gb|AC138134.6| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence Length = 202316 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tacagtctttattttttatt 48 |||||||||||||||||||| Sbjct: 102903 tacagtctttattttttatt 102884
>emb|AL035609.7|HS77O19 Human DNA sequence from clone RP1-77O19 on chromosome Xq21.33-22.3 Contains the gene for beta thymosin identified in neuroblastoma cells (TMSNB), complete sequence Length = 29188 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cagtctttattttttattct 50 |||||||||||||||||||| Sbjct: 26083 cagtctttattttttattct 26064
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ccttgcgggccagccggtcg 351 |||||||||||||||||||| Sbjct: 52315 ccttgcgggccagccggtcg 52296
>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4 Length = 343050 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tattacagtctttatttttt 45 |||||||||||||||||||| Sbjct: 160554 tattacagtctttatttttt 160573
>gb|AC142249.6| Mus musculus chromosome 19, clone RP23-388O22, complete sequence Length = 201321 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gaggttcatgtgtattacag 33 |||||||||||||||||||| Sbjct: 24369 gaggttcatgtgtattacag 24388
>gb|AC092544.4| Homo sapiens BAC clone RP11-317F4 from 4, complete sequence Length = 159263 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 22 tgtgtattacagtctttattttttattc 49 ||||||||||| | |||||||||||||| Sbjct: 85572 tgtgtattacaatttttattttttattc 85545
>dbj|AP000042.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 13/28, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tctttattttttattctttg 53 |||||||||||||||||||| Sbjct: 10030 tctttattttttattctttg 10049
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ccttgcgggccagccggtcg 351 |||||||||||||||||||| Sbjct: 2024134 ccttgcgggccagccggtcg 2024153
>gb|AC078847.2|AC078847 Homo sapiens chromosome 7 clone RP11-3M15, complete sequence Length = 170919 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tacagtctttattttttatt 48 |||||||||||||||||||| Sbjct: 116676 tacagtctttattttttatt 116695
>gb|AC096649.1| Homo sapiens BAC clone RP11-12N7 from 2, complete sequence Length = 172718 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 cagtctttattttttattctttga 54 |||||||||||||||||| ||||| Sbjct: 66813 cagtctttattttttattttttga 66790
>emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, complete sequence Length = 164218 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tttattttttattctttgat 55 |||||||||||||||||||| Sbjct: 23049 tttattttttattctttgat 23068
>emb|AL954214.1| Pan troglodytes chromosome 22 clone PTB-026G12 map 22q22.11, complete sequence Length = 149317 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tctttattttttattctttg 53 |||||||||||||||||||| Sbjct: 1194 tctttattttttattctttg 1213
>emb|AL954213.1| Pan troglodytes chromosome 22 clone RP43-040C07 map 22q22.11, complete sequence Length = 156234 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tctttattttttattctttg 53 |||||||||||||||||||| Sbjct: 92230 tctttattttttattctttg 92249
>dbj|AP001716.1| Homo sapiens genomic DNA, chromosome 21q, section 60/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tctttattttttattctttg 53 |||||||||||||||||||| Sbjct: 36180 tctttattttttattctttg 36199
>emb|CT010518.7| M.truncatula DNA sequence from clone MTH2-78A9 on chromosome 3, complete sequence Length = 135014 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 attacagtctttatttttta 46 |||||||||||||||||||| Sbjct: 132449 attacagtctttatttttta 132468
>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete sequence Length = 203615 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ctttattttttattctttga 54 |||||||||||||||||||| Sbjct: 41636 ctttattttttattctttga 41617
>gb|AC074314.29| 433m13, complete sequence Length = 209644 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ctttattttttattctttga 54 |||||||||||||||||||| Sbjct: 158469 ctttattttttattctttga 158450
>gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, complete sequence Length = 176325 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gaggttcatgtgtattacag 33 |||||||||||||||||||| Sbjct: 168687 gaggttcatgtgtattacag 168706
>emb|AL022275.1|CEW06B3 Caenorhabditis elegans Cosmid W06B3, complete sequence Length = 19714 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ttattttttattctttgatg 56 |||||||||||||||||||| Sbjct: 8084 ttattttttattctttgatg 8065
>gb|AC149059.3| Mus musculus BAC clone RP23-325A2 from 18, complete sequence Length = 206973 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tacagtctttattttttatt 48 |||||||||||||||||||| Sbjct: 342 tacagtctttattttttatt 323
>gb|L22144.1|MUSS100B Mouse S100 beta protein exons 1-3, complete cds Length = 8873 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ttacagtctttattttttat 47 |||||||||||||||||||| Sbjct: 3720 ttacagtctttattttttat 3739
>dbj|AP000289.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:S701, complete sequence Length = 87375 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tctttattttttattctttg 53 |||||||||||||||||||| Sbjct: 19821 tctttattttttattctttg 19840
>dbj|AP000186.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone Q78C10-f32E9, segment 13/21, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tctttattttttattctttg 53 |||||||||||||||||||| Sbjct: 16006 tctttattttttattctttg 16025
>dbj|AP000110.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, Q78C10-149C3 region, segment 13/20 Length = 100000 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tctttattttttattctttg 53 |||||||||||||||||||| Sbjct: 16006 tctttattttttattctttg 16025 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,465,808 Number of Sequences: 3902068 Number of extensions: 3465808 Number of successful extensions: 82291 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82131 Number of HSP's gapped (non-prelim): 160 length of query: 380 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 358 effective length of database: 17,147,199,772 effective search space: 6138697518376 effective search space used: 6138697518376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)