ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart24d08 |
|---|---|
| Clone Library Name | barley_pub |
>LEG3_MOUSE (P16110) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) (L-34 galactoside-binding lectin) Length = 263 Score = 32.7 bits (73), Expect = 0.50 Identities = 17/29 (58%), Positives = 18/29 (62%) Frame = -2 Query: 474 APGSTAPGSTAPGSARGPGAWTAPPRQPA 388 AP S PG TAPG+ GP A A P QPA Sbjct: 65 APPSAYPGPTAPGAYPGPTAPGAYPGQPA 93
>ADA2C_HUMAN (P18825) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)| (Alpha-2C adrenoreceptor) (Alpha-2 adrenergic receptor subtype C4) Length = 462 Score = 31.2 bits (69), Expect = 1.4 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = +2 Query: 380 RKQAGCRGGAVHAPGPRAEPGAVEPGAV 463 R++AG GGA A G A PGA E GA+ Sbjct: 306 RRRAGAEGGAGGADGQGAGPGAAESGAL 333
>DUS8_HUMAN (Q13202) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC| 3.1.3.16) (Dual specificity protein phosphatase hVH-5) Length = 625 Score = 31.2 bits (69), Expect = 1.4 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 8/35 (22%) Frame = -2 Query: 462 TAPGSTAPGSARGPGAWTAP--------PRQPACF 382 +APG PG GPGAW P P P CF Sbjct: 492 SAPGLPGPGQPAGPGAWAPPLDSPGTPSPDGPWCF 526
>DED1_GIBZE (Q4I7K4) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 675 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = -1 Query: 475 GTGFNSTGLNGTGFSPGTGSMDGTAAAAG 389 G GFN+ G G GFS G G G AG Sbjct: 622 GGGFNNAGSQGAGFSAGGGGGAGYGGGAG 650
>CJ084_MOUSE (Q8C6C7) Protein C10orf84 homolog| Length = 236 Score = 30.4 bits (67), Expect = 2.5 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +2 Query: 20 RQYKNRQGRQGSLQRERDSHPTKSYTTSLWEAI 118 RQ K ++ ++G L+ E++SH +S + WE + Sbjct: 101 RQKKRKRSKKGKLKNEKESHSEQSSNETQWEEL 133
>HNF3B_ORYLA (O42097) Hepatocyte nuclear factor 3-beta (HNF-3B) (Me-HNF3B)| (Forkhead box protein A2) Length = 415 Score = 30.4 bits (67), Expect = 2.5 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 7/42 (16%) Frame = -1 Query: 478 MGTGFNSTGLNG--TGFSPGTGSMDG-----TAAAAGLLPSM 374 M + +TG++ TG SPGTG+M+G TA + L PSM Sbjct: 61 MNMSYVNTGMSPSMTGMSPGTGAMNGMGAGMTAMSTALSPSM 102
>ADCY5_CANFA (P30803) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase| type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5) (Ca(2+)-inhibitable adenylyl cyclase) Length = 1265 Score = 30.0 bits (66), Expect = 3.2 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 8/52 (15%) Frame = +2 Query: 341 KEEDGDG-GRQSHRRKQAGCRGGAVHAP------GPRAEPGA-VEPGAVEPG 472 +E GD GR S RR++ GG+ AP GP A GA V P +VE G Sbjct: 121 QERGGDDCGRGSRRRRRGAAGGGSSRAPPAGGGGGPAAAGGAEVRPRSVELG 172
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 29.6 bits (65), Expect = 4.2 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Frame = +2 Query: 350 DGDG-GRQSHRRKQAGCRGGAVHAPGPRAEPGAVE----PGAVEPGAH 478 DG+ G++ ++ +A G A G EPG PG EPGAH Sbjct: 475 DGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAH 522
>YEBC_BACSU (O34341) Hypothetical protein yebC| Length = 267 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +2 Query: 11 KSSRQYKNRQGRQGSLQRERDSHPTKSYTTSLWEAIN 121 K+SRQ K +Q ++ ++ER K S+W AIN Sbjct: 32 KASRQSKQKQKQKQKPRQERGESTVKDKLASVWAAIN 68
>DUS8_MOUSE (O09112) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC| 3.1.3.16) (Neuronal tyrosine threonine phosphatase 1) Length = 663 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 8/35 (22%) Frame = -2 Query: 462 TAPGSTAPGSARGPGAWTAP--------PRQPACF 382 +APG PG GPG W P P P CF Sbjct: 493 SAPGLPGPGQPAGPGGWVPPLDSPGTPSPDGPWCF 527
>LEG3_CANFA (P38486) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) Length = 295 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 6/34 (17%) Frame = -2 Query: 471 PGSTAPGSTAPGSARGPGAW------TAPPRQPA 388 PG TAPG T PG GPGA+ +AP PA Sbjct: 116 PGPTAPG-TQPGQPSGPGAYPPPGQPSAPGAYPA 148
>GASR_RABIT (P46627) Gastrin/cholecystokinin type B receptor (CCK-B receptor)| (CCK-BR) (Cholecystokinin-2 receptor) (CCK2-R) Length = 452 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/39 (43%), Positives = 19/39 (48%) Frame = +2 Query: 344 EEDGDGGRQSHRRKQAGCRGGAVHAPGPRAEPGAVEPGA 460 + D D QS R Q G GGA APGP + G P A Sbjct: 250 DSDSDSESQSRVRGQGGLPGGA--APGPVHQNGRCRPEA 286
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline| helicase 2) Length = 974 Score = 28.9 bits (63), Expect = 7.2 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 4/34 (11%) Frame = -1 Query: 475 GTGFNSTGLNGTGF----SPGTGSMDGTAAAAGL 386 GTGF S GTGF + GTG G A GL Sbjct: 105 GTGFGSGNAGGTGFGGGNAGGTGFGSGNAGGTGL 138 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -1 Query: 475 GTGFNSTGLNGTGFSPGTGSMDGTAAAAG 389 GTGF S GTGF G+G+ GT +G Sbjct: 145 GTGFGSGNAGGTGF--GSGNAGGTGFGSG 171 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -1 Query: 475 GTGFNSTGLNGTGFSPGTGSMDGTAAAAG 389 GTGF S GTGF G+G+ GT +G Sbjct: 85 GTGFGSGNAGGTGF--GSGNAGGTGFGSG 111 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -1 Query: 475 GTGFNSTGLNGTGFSPGTGSMDGTAAAAG 389 GTGF S GTGF G+G+ GT +G Sbjct: 75 GTGFGSGNAGGTGF--GSGNAGGTGFGSG 101
>TRA1_DROME (Q8I8U7) Transcription-associated protein 1 (dTRA1)| Length = 3805 Score = 28.9 bits (63), Expect = 7.2 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = +2 Query: 179 ITTIRSPDRWIPLHKI--HTLSLLLAHQTTRPLKLADVFL 292 +TTI SPD+ + + + LSL + HQ TR ++L +FL Sbjct: 2115 LTTILSPDQLVSIIRPVQRGLSLCIIHQNTRIVRLMHMFL 2154
>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (FAP-A) Length = 381 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 474 APGSTAPGSTAPGSARGPGAWTAPPRQP 391 APG TAP + AP + P A AP +P Sbjct: 332 APGVTAPAAPAPAAPGAPAAPGAPAPEP 359
>CCD44_HUMAN (Q9BSH4) Coiled-coil domain-containing protein 44| Length = 297 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -2 Query: 477 WAPGSTAPGSTAPGSARGPGAWTAPPRQP 391 WA S + + ARGPG APPR P Sbjct: 4 WAAASLSRAAARCLLARGPGVRAAPPRDP 32
>IE68_EHV4 (P18346) Immediate-early protein IE68 (ORF4) (Fragment)| Length = 273 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 459 APGSTAPGSARGPGAWTAPPRQP 391 +P S P +RGPGA+ APP +P Sbjct: 59 SPRSLRPYLSRGPGAFCAPPWRP 81
>DGAT1_RAT (Q9ERM3) Diacylglycerol O-acyltransferase 1 (EC 2.3.1.20)| (Diglyceride acyltransferase) Length = 498 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +2 Query: 359 GGRQSHRRKQAGCRGGAVHAPGPRAEPGAVEPGAVEP 469 GG S RR++ G R GP+ E V AV P Sbjct: 5 GGAGSSRRRRTGSRVSVQGGSGPKVEEDEVREAAVSP 41
>DGAT1_MOUSE (Q9Z2A7) Diacylglycerol O-acyltransferase 1 (EC 2.3.1.20)| (Diglyceride acyltransferase) Length = 498 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +2 Query: 359 GGRQSHRRKQAGCRGGAVHAPGPRAEPGAVEPGAVEP 469 GG S RR++ G R GP+ E V AV P Sbjct: 5 GGAGSSRRRRTGSRVSVQGGSGPKVEEDEVRDAAVSP 41
>GASR_CANFA (P30552) Gastrin/cholecystokinin type B receptor (CCK-B receptor)| (CCK-BR) (Cholecystokinin-2 receptor) (CCK2-R) Length = 453 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +2 Query: 350 DGDGGRQSHRRKQAGCRGGAVHAPGPRAEPGAVEP 454 D D +S R Q G RGGA PGP G+ P Sbjct: 253 DEDSDSESRVRSQGGLRGGA--GPGPAPPNGSCRP 285
>CTTB2_OTOGA (Q2QLG9) Cortactin-binding protein 2 (CortBP2)| Length = 1655 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = -2 Query: 474 APGST--APGSTA-PGSARGPGAWTAPPRQPA 388 +PGST APGS A PGSA PG+ APP A Sbjct: 379 SPGSTPDAPGSAAPPGSAAPPGS-AAPPGSAA 409
>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2| Length = 925 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/25 (52%), Positives = 13/25 (52%) Frame = +2 Query: 398 RGGAVHAPGPRAEPGAVEPGAVEPG 472 R G V PG A PGA PG PG Sbjct: 219 RPGGVGGPGRPARPGAPRPGGGRPG 243
>PHX2B_MOUSE (O35690) Paired mesoderm homeobox protein 2B (Paired-like homeobox| 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox) Length = 314 Score = 28.5 bits (62), Expect = 9.4 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Frame = +2 Query: 299 EKTDTQTSW*CQVAKEEDGDG----GRQSHRRKQAGCRGGAVHAPGPRAEPGAVEPGAV- 463 +K+D+ + AK D D G + G GG P P PGA PG Sbjct: 174 KKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPG 233 Query: 464 -EPG 472 EPG Sbjct: 234 GEPG 237
>PHX2B_HUMAN (Q99453) Paired mesoderm homeobox protein 2B (Paired-like homeobox| 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox) Length = 314 Score = 28.5 bits (62), Expect = 9.4 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Frame = +2 Query: 299 EKTDTQTSW*CQVAKEEDGDG----GRQSHRRKQAGCRGGAVHAPGPRAEPGAVEPGAV- 463 +K+D+ + AK D D G + G GG P P PGA PG Sbjct: 174 KKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPG 233 Query: 464 -EPG 472 EPG Sbjct: 234 GEPG 237
>LEG3_RAT (P08699) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) Length = 261 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 471 PGSTAPGSTAPGSARGPGAWTAPP 400 PG TAPG+ PG GPGA+ + P Sbjct: 80 PGPTAPGAF-PGQPGGPGAYPSAP 102
>IE68_EHV1K (P68337) Immediate-early protein IE68 (In vitro host-range factor)| (IR4 protein) (ORF S1-2) Length = 293 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 459 APGSTAPGSARGPGAWTAPPRQP 391 +P + P ARGPGA+ APP +P Sbjct: 71 SPRALRPYLARGPGAFCAPPWRP 93
>IE68_EHV1B (Q6S6W5) Immediate-early protein IE68 (In vitro host-range factor)| (IR4 protein) (ORF S1-2) Length = 293 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 459 APGSTAPGSARGPGAWTAPPRQP 391 +P + P ARGPGA+ APP +P Sbjct: 71 SPRALRPYLARGPGAFCAPPWRP 93
>S35A2_HUMAN (P78381) UDP-galactose translocator (UDP-galactose transporter)| (UGT) (UDP-Gal-Tr) (Solute carrier family 35 member A2) Length = 396 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +2 Query: 401 GGAVHAPGPRAEPGAVEPGAVEPG 472 GG+ APGP GAV GA+EPG Sbjct: 7 GGSTAAPGP----GAVSAGALEPG 26 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,649,341 Number of Sequences: 219361 Number of extensions: 1369062 Number of successful extensions: 7222 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4814 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7061 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
