Clone Information

BLAST Search Result

Clone Name	rbart24d08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467986.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.41
2	gb\|AY813059.1\| Schistosoma japonicum SJCHGC06107 protein mRNA, c...	44	0.41
3	gb\|AC122419.4\| Mus musculus BAC clone RP24-163H24 from chromosom...	44	0.41
4	gb\|AC073387.4\| Homo sapiens BAC clone RP11-10E6 from 7, complete...	44	0.41
5	gb\|AC035143.5\| Homo sapiens chromosome 5 clone CTD-2069C21, comp...	44	0.41
6	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.41
7	gb\|AC146384.4\| Pan troglodytes BAC clone RP43-126A5 from chromos...	44	0.41
8	gb\|AC008854.3\|AC008854 Homo sapiens chromosome 5 clone CTD-2177J...	44	0.41
9	dbj\|AP004125.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.41
10	dbj\|AP004080.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.41
11	gb\|AC100386.29\| Mus musculus chromosome 10, clone RP23-132J19, c...	44	0.41
12	gb\|AC141892.4\| Mus musculus BAC clone RP23-388J12 from 13, compl...	44	0.41
13	gb\|AC166169.2\| Mus musculus BAC clone RP23-193F7 from chromosome...	42	1.6
14	gb\|AC102856.5\| Mus musculus chromosome 8, clone RP24-500H8, comp...	42	1.6
15	emb\|CR974575.8\| Mouse DNA sequence from clone RP23-77K24 on chro...	42	1.6
16	emb\|CR974455.5\| Mouse DNA sequence from clone RP24-65D22 on chro...	42	1.6
17	gb\|AC113481.12\| Mus musculus chromosome 12, clone RP23-310G22, c...	42	1.6
18	gb\|AC118224.8\| Mus musculus chromosome 10, clone RP23-341N20, co...	42	1.6
19	gb\|AC113085.6\| Mus musculus chromosome 8, clone RP23-292P21, com...	42	1.6
20	gb\|AC097273.3\| Genomic sequence for Mus musculus, clone RP23-118...	42	1.6
21	gb\|AC154754.2\| Mus musculus BAC clone RP24-405D2 from chromosome...	42	1.6
22	gb\|AC156608.10\| Mus musculus chromosome 8, clone RP23-303A11, co...	42	1.6
23	gb\|AY186733.1\| Bovine papular stomatitis virus ankyrin-repeat pr...	42	1.6
24	gb\|AC159331.9\| Mus musculus 10 BAC RP23-218E2 (Roswell Park Canc...	42	1.6
25	gb\|AC104326.20\| Mus musculus strain C57BL/6J chromosome 2 clone ...	42	1.6
26	gb\|AC124005.13\| Mus musculus chromosome 3, clone RP24-149B7, com...	42	1.6
27	gb\|AC140349.4\| Mus musculus BAC clone RP24-250I16 from 12, compl...	42	1.6
28	gb\|CP000127.1\| Nitrosococcus oceani ATCC 19707, complete genome	40	6.5
29	ref\|XM_360819.1\| Magnaporthe grisea 70-15 hypothetical protein (...	40	6.5
30	gb\|AC134460.4\| Mus musculus BAC clone RP23-373D18 from chromosom...	40	6.5
31	gb\|AC158652.5\| Mus musculus 6 BAC RP23-238I17 (Roswell Park Canc...	40	6.5
32	gb\|AC154903.4\| Mus musculus BAC clone RP23-414E24 from chromosom...	40	6.5
33	gb\|AC137512.2\| Mus musculus chromosome 12 clone RP24-323C12, com...	40	6.5
34	gb\|AC116656.5\| Mus musculus BAC clone RP23-10A7 from chromosome ...	40	6.5
35	ref\|XM_726130.1\| Plasmodium yoelii yoelii str. 17XNL hypothetica...	40	6.5
36	ref\|XM_670808.1\| Plasmodium berghei strain ANKA hypothetical pro...	40	6.5
37	gb\|AC101810.5\| Mus musculus chromosome 15, clone RP24-278M16, co...	40	6.5
38	gb\|AC157380.6\| Mus musculus chromosome 3, clone RP23-404C21, com...	40	6.5
39	gb\|AC096625.25\| Mus musculus strain C57BL/6J clone rp23-388i7 ma...	40	6.5
40	gb\|AC163613.5\| Mus musculus BAC clone RP24-150N2 from chromosome...	40	6.5
41	emb\|AL513265.4\| Human DNA sequence from clone RP13-377L5 on chro...	40	6.5
42	emb\|AL135926.12\| Human DNA sequence from clone RP11-375F2 on chr...	40	6.5
43	emb\|AL121887.24\|HS1040G13 Human DNA sequence from clone RP5-1040...	40	6.5
44	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	40	6.5
45	gb\|AC009373.7\| Drosophila melanogaster 3L BAC RP98-22B18 (Roswel...	40	6.5
46	gb\|AC097261.6\| Homo sapiens X BAC RP11-109P4 (Roswell Park Cance...	40	6.5
47	gb\|AC112916.3\| Homo sapiens X BAC RP11-765I9 (Roswell Park Cance...	40	6.5
48	dbj\|AK144348.1\| Mus musculus 13 days embryo brain cDNA, RIKEN fu...	40	6.5
49	gb\|AC097348.5\| Homo sapiens X BAC RP11-489K4 (Roswell Park Cance...	40	6.5
50	emb\|BX649538.4\| Zebrafish DNA sequence from clone CH211-239N21 i...	40	6.5
51	gb\|AC141001.6\| Homo sapiens X BAC RP11-1051N9 (Roswell Park Canc...	40	6.5
52	gb\|AC009502.4\| Homo sapiens BAC clone RP11-512O7 from 2, complet...	40	6.5
53	gb\|AC068130.3\| Homo sapiens BAC clone RP11-640F22 from 2, comple...	40	6.5
54	gb\|AC157956.2\| Pan troglodytes BAC clone CH251-379N13 from chrom...	40	6.5
55	gb\|AC007305.40\| Mus musculus strain 129/SvJ clone mgs1-211l20 ma...	40	6.5
56	gb\|AC093350.15\| Mus musculus chromosome 3, clone RP23-16G3, comp...	40	6.5
57	emb\|CT476800.3\| RP43-013D05, complete sequence	40	6.5
58	gb\|AE003524.5\| Drosophila melanogaster chromosome 3L, section 61...	40	6.5
59	gb\|AC158785.5\| Mus musculus chromosome 8, clone RP23-182G15, com...	40	6.5
60	gb\|AC119171.10\| Mus musculus chromosome 8, clone RP23-201B1, com...	40	6.5
61	gb\|AC153533.4\| Mus musculus 10 BAC RP23-474K10 (Roswell Park Can...	40	6.5
62	gb\|AC005325.1\|AC005325 Homo sapiens chromosome 17, clone hRPK.60...	40	6.5
63	gb\|AC131189.3\| Mus musculus BAC clone RP24-330P2 from 8, complet...	40	6.5
64	gb\|AC146603.3\| Mus musculus BAC clone RP23-304P17 from 8, comple...	40	6.5
65	gb\|AC153850.3\| Mus musculus 6 BAC RP23-81F19 (Roswell Park Cance...	40	6.5
66	gb\|AC169816.2\| Rhesus Macaque CHR2 BAC CH250-117I15 (Children's ...	40	6.5
67	emb\|AL391155.3\|CNS06C81 Human chromosome 14 DNA sequence BAC R-5...	40	6.5
68	gb\|AC159239.3\| Mus musculus BAC clone RP24-496E14 from chromosom...	40	6.5

>ref|XM_467986.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 876

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 339 caaaggaggaggatggcgatgg 360
           ||||||||||||||||||||||
Sbjct: 314 caaaggaggaggatggcgatgg 335

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>gb|AY813059.1| Schistosoma japonicum SJCHGC06107 protein mRNA, complete cds
          Length = 1855

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 342 aggaggaggatggcgatggagg 363
           ||||||||||||||||||||||
Sbjct: 500 aggaggaggatggcgatggagg 521

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>gb|AC122419.4| Mus musculus BAC clone RP24-163H24 from chromosome 10, complete sequence
          Length = 131907

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 305    acagacacacagacttcatggt 326
              ||||||||||||||||||||||
Sbjct: 106958 acagacacacagacttcatggt 106937

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>gb|AC073387.4| Homo sapiens BAC clone RP11-10E6 from 7, complete sequence
          Length = 153300

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 296   tgagaaaagacagacacacaga 317
             ||||||||||||||||||||||
Sbjct: 43011 tgagaaaagacagacacacaga 43032

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>gb|AC035143.5| Homo sapiens chromosome 5 clone CTD-2069C21, complete sequence
          Length = 108276

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 318   cttcatggtagtgccaagtagc 339
             ||||||||||||||||||||||
Sbjct: 21783 cttcatggtagtgccaagtagc 21804

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 339      caaaggaggaggatggcgatgg 360
                ||||||||||||||||||||||
Sbjct: 32418766 caaaggaggaggatggcgatgg 32418745

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>gb|AC146384.4| Pan troglodytes BAC clone RP43-126A5 from chromosome 7, complete sequence
          Length = 120025

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 296    tgagaaaagacagacacacaga 317
              ||||||||||||||||||||||
Sbjct: 113616 tgagaaaagacagacacacaga 113637

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>gb|AC008854.3|AC008854 Homo sapiens chromosome 5 clone CTD-2177J2, complete sequence
          Length = 129538

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 318    cttcatggtagtgccaagtagc 339
              ||||||||||||||||||||||
Sbjct: 104611 cttcatggtagtgccaagtagc 104632

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>dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1767_D02
          Length = 139145

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 339   caaaggaggaggatggcgatgg 360
             ||||||||||||||||||||||
Sbjct: 80279 caaaggaggaggatggcgatgg 80258

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>dbj|AP004080.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1079_F11
          Length = 122402

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 339   caaaggaggaggatggcgatgg 360
             ||||||||||||||||||||||
Sbjct: 22159 caaaggaggaggatggcgatgg 22138

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>gb|AC100386.29| Mus musculus chromosome 10, clone RP23-132J19, complete sequence
          Length = 216928

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 305    acagacacacagacttcatggt 326
              ||||||||||||||||||||||
Sbjct: 206669 acagacacacagacttcatggt 206690

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>gb|AC141892.4| Mus musculus BAC clone RP23-388J12 from 13, complete sequence
          Length = 219862

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 298    agaaaagacagacacacagact 319
              ||||||||||||||||||||||
Sbjct: 149608 agaaaagacagacacacagact 149587

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>gb|AC166169.2| Mus musculus BAC clone RP23-193F7 from chromosome 14, complete sequence
          Length = 235897

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 26     tataaaaacagacaaggaaga 46
              |||||||||||||||||||||
Sbjct: 184839 tataaaaacagacaaggaaga 184859

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>gb|AC102856.5| Mus musculus chromosome 8, clone RP24-500H8, complete sequence
          Length = 195286

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 298    agaaaagacagacacacagac 318
              |||||||||||||||||||||
Sbjct: 186674 agaaaagacagacacacagac 186694

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>emb|CR974575.8| Mouse DNA sequence from clone RP23-77K24 on chromosome 12, complete
              sequence
          Length = 221107

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 298    agaaaagacagacacacagac 318
              |||||||||||||||||||||
Sbjct: 189303 agaaaagacagacacacagac 189283

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>emb|CR974455.5| Mouse DNA sequence from clone RP24-65D22 on chromosome 2, complete
             sequence
          Length = 193651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 298   agaaaagacagacacacagac 318
             |||||||||||||||||||||
Sbjct: 83086 agaaaagacagacacacagac 83066

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>gb|AC113481.12| Mus musculus chromosome 12, clone RP23-310G22, complete sequence
          Length = 199650

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 298    agaaaagacagacacacagac 318
              |||||||||||||||||||||
Sbjct: 127558 agaaaagacagacacacagac 127578

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>gb|AC118224.8| Mus musculus chromosome 10, clone RP23-341N20, complete sequence
          Length = 205533

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 298    agaaaagacagacacacagac 318
              |||||||||||||||||||||
Sbjct: 110326 agaaaagacagacacacagac 110306

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>gb|AC113085.6| Mus musculus chromosome 8, clone RP23-292P21, complete sequence
          Length = 211723

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 27    ataaaaacagacaaggaagacaagg 51
             |||||||||||||||||| ||||||
Sbjct: 47036 ataaaaacagacaaggaaaacaagg 47012

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>gb|AC097273.3| Genomic sequence for Mus musculus, clone RP23-118N13, complete sequence
          Length = 211657

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   agaaaagacagacacacagac 318
             |||||||||||||||||||||
Sbjct: 11817 agaaaagacagacacacagac 11837

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>gb|AC154754.2| Mus musculus BAC clone RP24-405D2 from chromosome 14, complete sequence
          Length = 159848

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    tataaaaacagacaaggaaga 46
             |||||||||||||||||||||
Sbjct: 21712 tataaaaacagacaaggaaga 21732

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>gb|AC156608.10| Mus musculus chromosome 8, clone RP23-303A11, complete sequence
          Length = 229633

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 298    agaaaagacagacacacagac 318
              |||||||||||||||||||||
Sbjct: 220660 agaaaagacagacacacagac 220640

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>gb|AY186733.1| Bovine papular stomatitis virus ankyrin-repeat protein ANK-1 (ANK-1)
            gene, partial cds; interleukin 10 (IL-10), ankyrin-repeat
            protein ANK-2 (ANK-2), ankyrin-repeat protein ANK-3
            (ANK-3), vaccinia virus F10L-like protein (F10L),
            vaccinia virus F9L-like protein (F9L), and ORF-X genes,
            complete cds; and ORF3 gene, partial cds
          Length = 7702

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 391  cggctgccgcggcggtgccgt 411
            |||||||||||||||||||||
Sbjct: 4092 cggctgccgcggcggtgccgt 4072

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>gb|AC159331.9| Mus musculus 10 BAC RP23-218E2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 186300

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 298    agaaaagacagacacacagac 318
              |||||||||||||||||||||
Sbjct: 176633 agaaaagacagacacacagac 176653

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>gb|AC104326.20| Mus musculus strain C57BL/6J chromosome 2 clone rp23-20g17, complete
              sequence
          Length = 232241

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 298    agaaaagacagacacacagac 318
              |||||||||||||||||||||
Sbjct: 119669 agaaaagacagacacacagac 119649

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>gb|AC124005.13| Mus musculus chromosome 3, clone RP24-149B7, complete sequence
          Length = 166406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 298   agaaaagacagacacacagac 318
             |||||||||||||||||||||
Sbjct: 59145 agaaaagacagacacacagac 59125

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>gb|AC140349.4| Mus musculus BAC clone RP24-250I16 from 12, complete sequence
          Length = 177344

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 298   agaaaagacagacacacagac 318
             |||||||||||||||||||||
Sbjct: 87949 agaaaagacagacacacagac 87929

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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 13    gagtagccgacagtataaaaacag 36
             |||||||||| |||||||||||||
Sbjct: 32645 gagtagccgatagtataaaaacag 32668

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>ref|XM_360819.1| Magnaporthe grisea 70-15 hypothetical protein (MG03362.4) partial
            mRNA
          Length = 1548

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 350  gatggcgatggaggccgcca 369
            ||||||||||||||||||||
Sbjct: 1161 gatggcgatggaggccgcca 1142

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>gb|AC134460.4| Mus musculus BAC clone RP23-373D18 from chromosome 10, complete
             sequence
          Length = 174545

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   gaaaagacagacacacagac 318
             ||||||||||||||||||||
Sbjct: 76338 gaaaagacagacacacagac 76319

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>gb|AC158652.5| Mus musculus 6 BAC RP23-238I17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 217046

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   atgagaaaagacagacacac 314
             ||||||||||||||||||||
Sbjct: 40826 atgagaaaagacagacacac 40845

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>gb|AC154903.4| Mus musculus BAC clone RP23-414E24 from chromosome 12, complete sequence
          Length = 201338

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     agtataaaaacagacaagga 43
              ||||||||||||||||||||
Sbjct: 134730 agtataaaaacagacaagga 134749

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>gb|AC137512.2| Mus musculus chromosome 12 clone RP24-323C12, complete sequence
          Length = 164776

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     agtataaaaacagacaagga 43
              ||||||||||||||||||||
Sbjct: 150052 agtataaaaacagacaagga 150033

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>gb|AC116656.5| Mus musculus BAC clone RP23-10A7 from chromosome 15, complete sequence
          Length = 198019

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   taaaattaaactagaaccaa 141
             ||||||||||||||||||||
Sbjct: 48907 taaaattaaactagaaccaa 48926

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>ref|XM_726130.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03231)
           partial mRNA
          Length = 1485

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 ttaaaattaaactagaacca 140
           ||||||||||||||||||||
Sbjct: 497 ttaaaattaaactagaacca 516

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>ref|XM_670808.1| Plasmodium berghei strain ANKA hypothetical protein (PB000551.03.0)
           partial mRNA
          Length = 1629

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 ttaaaattaaactagaacca 140
           ||||||||||||||||||||
Sbjct: 497 ttaaaattaaactagaacca 516

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>gb|AC101810.5| Mus musculus chromosome 15, clone RP24-278M16, complete sequence
          Length = 178304

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    taaaattaaactagaaccaa 141
              ||||||||||||||||||||
Sbjct: 170487 taaaattaaactagaaccaa 170506

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>gb|AC157380.6| Mus musculus chromosome 3, clone RP23-404C21, complete sequence
          Length = 196528

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   taaattaaaattaaactaga 136
             ||||||||||||||||||||
Sbjct: 99504 taaattaaaattaaactaga 99485

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>gb|AC096625.25| Mus musculus strain C57BL/6J clone rp23-388i7 map 1, complete
           sequence
          Length = 191415

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 caaggccactgaagctagct 280
           ||||||||||||||||||||
Sbjct: 757 caaggccactgaagctagct 776

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>gb|AC163613.5| Mus musculus BAC clone RP24-150N2 from chromosome 1, complete sequence
          Length = 135256

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   caaggccactgaagctagct 280
             ||||||||||||||||||||
Sbjct: 49713 caaggccactgaagctagct 49694

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>emb|AL513265.4| Human DNA sequence from clone RP13-377L5 on chromosome X, complete
             sequence
          Length = 49560

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   cataaattaaaattaaacta 134
             ||||||||||||||||||||
Sbjct: 45870 cataaattaaaattaaacta 45851

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>emb|AL135926.12| Human DNA sequence from clone RP11-375F2 on chromosome 1 Contains a
             ubiquitin-like 1 (sentrin) (UBL1) pseudogene, the 3' end
             of a novel gene and a ribosomal protein L29 (RPL29)
             pseudogene, complete sequence
          Length = 158519

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    ggaaagagacagccatccta 83
             ||||||||||||||||||||
Sbjct: 70155 ggaaagagacagccatccta 70136

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>emb|AL121887.24|HS1040G13 Human DNA sequence from clone RP5-1040G13 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 113473

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   aaattaaaattaaactagaa 137
             ||||||||||||||||||||
Sbjct: 84534 aaattaaaattaaactagaa 84553

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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 366     gccagtctcatcgacggaag 385
               ||||||||||||||||||||
Sbjct: 1517143 gccagtctcatcgacggaag 1517124

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>gb|AC009373.7| Drosophila melanogaster 3L BAC RP98-22B18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 167630

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   aaattaaaattaaactagaa 137
             ||||||||||||||||||||
Sbjct: 30640 aaattaaaattaaactagaa 30659

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>gb|AC097261.6| Homo sapiens X BAC RP11-109P4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 97628

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 294   catgagaaaagacagacacacaga 317
             |||| |||||||||||||||||||
Sbjct: 45101 catgtgaaaagacagacacacaga 45078

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>gb|AC112916.3| Homo sapiens X BAC RP11-765I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172457

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    gtataaaaacagacaaggaagaca 48
             |||||||||||| |||||||||||
Sbjct: 26999 gtataaaaacagccaaggaagaca 26976

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>dbj|AK144348.1| Mus musculus 13 days embryo brain cDNA, RIKEN full-length enriched
           library, clone:G630029H02 product:unclassifiable, full
           insert sequence
          Length = 951

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 299 gaaaagacagacacacagac 318
           ||||||||||||||||||||
Sbjct: 328 gaaaagacagacacacagac 309

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>gb|AC097348.5| Homo sapiens X BAC RP11-489K4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 85293

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    gtataaaaacagacaaggaagaca 48
             |||||||||||| |||||||||||
Sbjct: 27018 gtataaaaacagccaaggaagaca 26995

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>emb|BX649538.4| Zebrafish DNA sequence from clone CH211-239N21 in linkage group 3,
             complete sequence
          Length = 147441

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   gagaaaagacagacacacag 316
             ||||||||||||||||||||
Sbjct: 19093 gagaaaagacagacacacag 19074

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>gb|AC141001.6| Homo sapiens X BAC RP11-1051N9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 49724

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   agaaaagacagacacacaga 317
             ||||||||||||||||||||
Sbjct: 36087 agaaaagacagacacacaga 36106

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>gb|AC009502.4| Homo sapiens BAC clone RP11-512O7 from 2, complete sequence
          Length = 194958

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    gacagtataaaaacagacaa 40
             ||||||||||||||||||||
Sbjct: 27229 gacagtataaaaacagacaa 27248

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>gb|AC068130.3| Homo sapiens BAC clone RP11-640F22 from 2, complete sequence
          Length = 187543

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    aaattaaaattaaactagaa 137
              ||||||||||||||||||||
Sbjct: 159166 aaattaaaattaaactagaa 159185

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>gb|AC157956.2| Pan troglodytes BAC clone CH251-379N13 from chromosome unknown, complete
              sequence
          Length = 164394

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     gacagtataaaaacagacaa 40
              ||||||||||||||||||||
Sbjct: 126598 gacagtataaaaacagacaa 126579

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>gb|AC007305.40| Mus musculus strain 129/SvJ clone mgs1-211l20 map 6, complete sequence
          Length = 214840

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    atgagaaaagacagacacac 314
              ||||||||||||||||||||
Sbjct: 122567 atgagaaaagacagacacac 122586

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>gb|AC093350.15| Mus musculus chromosome 3, clone RP23-16G3, complete sequence
          Length = 200326

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    agaaaagacagacacacaga 317
              ||||||||||||||||||||
Sbjct: 129870 agaaaagacagacacacaga 129851

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>emb|CT476800.3| RP43-013D05, complete sequence
          Length = 207013

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    gtataaaaacagacaaggaagaca 48
             |||||||||||| |||||||||||
Sbjct: 86150 gtataaaaacagccaaggaagaca 86127

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>gb|AE003524.5| Drosophila melanogaster chromosome 3L, section 61 of 83 of the complete
              sequence
          Length = 425677

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    aaattaaaattaaactagaa 137
              ||||||||||||||||||||
Sbjct: 287843 aaattaaaattaaactagaa 287862

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>gb|AC158785.5| Mus musculus chromosome 8, clone RP23-182G15, complete sequence
          Length = 208815

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    agaaaagacagacacacaga 317
              ||||||||||||||||||||
Sbjct: 172829 agaaaagacagacacacaga 172810

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>gb|AC119171.10| Mus musculus chromosome 8, clone RP23-201B1, complete sequence
          Length = 192853

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    agaaaagacagacacacaga 317
              ||||||||||||||||||||
Sbjct: 140910 agaaaagacagacacacaga 140929

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>gb|AC153533.4| Mus musculus 10 BAC RP23-474K10 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 187069

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    gaaaagacagacacacagac 318
              ||||||||||||||||||||
Sbjct: 166524 gaaaagacagacacacagac 166543

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>gb|AC005325.1|AC005325 Homo sapiens chromosome 17, clone hRPK.60_A_24, complete sequence
          Length = 165228

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    gagaaaagacagacacacag 316
              ||||||||||||||||||||
Sbjct: 117532 gagaaaagacagacacacag 117513

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>gb|AC131189.3| Mus musculus BAC clone RP24-330P2 from 8, complete sequence
          Length = 157757

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 295    atgagaaaagacagacacacagac 318
              |||||||| |||||||||||||||
Sbjct: 128803 atgagaaaggacagacacacagac 128780

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>gb|AC146603.3| Mus musculus BAC clone RP23-304P17 from 8, complete sequence
          Length = 167842

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 295   atgagaaaagacagacacacagac 318
             |||||||| |||||||||||||||
Sbjct: 74825 atgagaaaggacagacacacagac 74802

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>gb|AC153850.3| Mus musculus 6 BAC RP23-81F19 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 194042

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  atgagaaaagacagacacac 314
            ||||||||||||||||||||
Sbjct: 9378 atgagaaaagacagacacac 9359

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>gb|AC169816.2| Rhesus Macaque CHR2 BAC CH250-117I15 (Children's Hospital Oakland
              Research Institute Rhesus macaque Adult Male BAC Library)
              complete sequence
          Length = 171344

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     gacagtataaaaacagacaa 40
              ||||||||||||||||||||
Sbjct: 115555 gacagtataaaaacagacaa 115536

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>emb|AL391155.3|CNS06C81 Human chromosome 14 DNA sequence BAC R-559M6 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 160550

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   cactgaagctagctgatgtg 286
             ||||||||||||||||||||
Sbjct: 43299 cactgaagctagctgatgtg 43318

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>gb|AC159239.3| Mus musculus BAC clone RP24-496E14 from chromosome 13, complete sequence
          Length = 206286

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    gaaaagacagacacacagac 318
              ||||||||||||||||||||
Sbjct: 144739 gaaaagacagacacacagac 144720


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,828,705
Number of Sequences: 3902068
Number of extensions: 4828705
Number of successful extensions: 136882
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136625
Number of HSP's gapped (non-prelim): 257
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result