Clone Name	rbart24d01
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AK101031.1| Oryza sativa (japonica cultivar-group) cDNA clon...	361	1e-96
2	dbj|AK060026.1| Oryza sativa (japonica cultivar-group) cDNA clon...	361	1e-96
3	dbj|AK059929.1| Oryza sativa (japonica cultivar-group) cDNA clon...	361	1e-96
4	dbj|AB026558.1| Oryza sativa (japonica cultivar-group) OsPAA1 mR...	361	1e-96
5	ref|XM_470540.1| Oryza sativa (japonica cultivar-group), predic...	353	3e-94
6	dbj|AK104324.1| Oryza sativa (japonica cultivar-group) cDNA clon...	353	3e-94
7	emb|AJ293343.1|ZMA293343 Zea mays mRNA for maize 20S proteasome ...	281	1e-72
8	gb|AY104377.1| Zea mays PCO108605 mRNA sequence	266	6e-68
9	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	125	1e-25
10	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	125	1e-25
11	gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome...	125	1e-25
12	gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome...	125	1e-25
13	gb|BT014031.1| Lycopersicon esculentum clone 133094R, mRNA sequence	103	5e-19
14	ref|NM_122950.2| Arabidopsis thaliana PAA1; endopeptidase/ pepti...	88	3e-14
15	emb|Y13691.1|ATY13691 Arabidopsis thaliana mRNA for proteasome s...	88	3e-14
16	gb|AY114564.1| Arabidopsis thaliana multicatalytic endopeptidase...	88	3e-14
17	gb|AY092969.1| Arabidopsis thaliana multicatalytic endopeptidase...	88	3e-14
18	emb|Y16644.1|NTY16644 Nicotiana tabacum mRNA for proteasome A-ty...	78	3e-11
19	gb|AF043518.1|AF043518 Arabidopsis thaliana 20S proteasome subun...	68	3e-08
20	gb|AF034572.1|AF034572 Glycine max proteasome IOTA subunit mRNA,...	62	2e-06
21	dbj|AB023031.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...	54	4e-04
22	ref|NM_126597.2| Arabidopsis thaliana PAA2; endopeptidase/ pepti...	48	0.026
23	gb|AY143829.1| Arabidopsis thaliana At2g05840/T6P5.4 mRNA, compl...	48	0.026
24	gb|AY052679.1| Arabidopsis thaliana At2g05840/T6P5.4 mRNA, compl...	48	0.026
25	gb|AF043519.1|AF043519 Arabidopsis thaliana 20S proteasome subun...	48	0.026
26	emb|AL357559.16| Human DNA sequence from clone RP11-393M18 on ch...	46	0.10
27	ref|NM_001036263.1| Arabidopsis thaliana PAA2; endopeptidase/ pe...	44	0.40
28	gb|AC098969.2| Homo sapiens chromosome 3 clone RP11-24O17, compl...	44	0.40
29	gb|AC156556.8| Mus musculus chromosome 7, clone RP23-92E8, compl...	42	1.6
30	gb|AC022039.7| Homo sapiens chromosome 8, clone RP11-3G21, compl...	42	1.6
31	gb|AC098818.3| Homo sapiens BAC clone RP11-109G23 from 4, comple...	42	1.6
32	dbj|AP003471.2| Homo sapiens genomic DNA, chromosome 8q23, clone...	42	1.6
33	dbj|AP002847.2| Homo sapiens genomic DNA, chromosome 8q23, clone...	42	1.6
34	gb|BC079919.1| Xenopus laevis MGC78853 protein, mRNA (cDNA clone...	40	6.3
35	gb|AC149071.3| Xenopus tropicalis BAC clone ISB10250N9 containin...	40	6.3
36	gb|AC161289.2| Pan troglodytes BAC clone CH251-170B19 from chrom...	40	6.3
37	gb|AC183672.2| Pan troglodytes BAC clone CH251-546K4 from chromo...	40	6.3
38	gb|AY054381.1| Hordeum vulgare clone INS2 Sukkula retrotransposo...	40	6.3
39	gb|AC122418.4| Mus musculus BAC clone RP24-159E6 from chromosome...	40	6.3
40	gb|AC146024.3| Pan troglodytes BAC clone RP43-119C21 from 7, com...	40	6.3
41	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	6.3
42	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	6.3
43	gb|AC004128.1| Homo sapiens PAC clone RP5-850G1 from 7, complete...	40	6.3
44	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	6.3
45	gb|AC183922.3| Pan troglodytes BAC clone CH251-344F10 from chrom...	40	6.3
46	emb|BX321911.6| Mouse DNA sequence from clone RP23-255M6 on chro...	40	6.3
47	gb|AY128534.1| Homo sapiens cyclin-dependent kinase 6 (CDK6) gen...	40	6.3
48	gb|AC161266.2| Mus musculus BAC clone RP23-231B13 from chromosom...	40	6.3
49	gb|AC149040.2| Medicago truncatula chromosome 7 BAC clone mth2-9...	40	6.3
50	gb|AC092598.2| Homo sapiens BAC clone RP11-114B11 from 2, comple...	40	6.3
51	ref|XM_574455.1| PREDICTED: Rattus norvegicus similar to hypothe...	40	6.3
52	gb|AC154868.3| Monodelphis domestica, clone XX-211C4, complete s...	40	6.3
53	gb|AC133955.4| Mus musculus BAC clone RP23-249M4 from 6, complet...	40	6.3

---

>dbj|AK101031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150K05, full
           insert sequence
          Length = 1048

 Score =  361 bits (182), Expect = 1e-96
 Identities = 260/286 (90%)
 Strand = Plus / Minus

                                                                       
Query: 178 tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtg 237
           |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 858 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtgagtg 799

                                                                       
Query: 238 accggaagacacggtcttctttcctcacaacaccgacctcgatctcggtagccttgaaat 297
             | ||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 798 ctctgaaaacacgatcatctttcctcacaacaccgacctcaatctcggtggccttgaaat 739

                                                                       
Query: 298 cttcctgcagaacagattgcaatgcagaaatcgcaatctgaacagtttcgtcatatgtga 357
           ||||||| ||||| ||||||||||||||||| |||||||| |||||||| || || | ||
Sbjct: 738 cttcctgaagaactgattgcaatgcagaaattgcaatctggacagtttcctcgtaggaga 679

                                                                       
Query: 358 actgcgggctatccttcattttcttctccagaaaatttattgcttcctgctccttaagtc 417
           |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 678 actgtgggtcatccttcattttcttctccagaaaatttattgcttcctgctccttaagac 619

                                                         
Query: 418 cggcactagttgccttgtgtccaaagaagtgacctgcggggtcaca 463
           |||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 618 cggcgctagttgccttatgtccaaagaagtgacctgccgggtcaca 573



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 95  acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 142
           |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 962 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 915

---

>dbj|AK060026.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C02, full
           insert sequence
          Length = 1043

 Score =  361 bits (182), Expect = 1e-96
 Identities = 260/286 (90%)
 Strand = Plus / Minus

                                                                       
Query: 178 tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtg 237
           |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 846 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtgagtg 787

                                                                       
Query: 238 accggaagacacggtcttctttcctcacaacaccgacctcgatctcggtagccttgaaat 297
             | ||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 786 ctctgaaaacacgatcatctttcctcacaacaccgacctcaatctcggtggccttgaaat 727

                                                                       
Query: 298 cttcctgcagaacagattgcaatgcagaaatcgcaatctgaacagtttcgtcatatgtga 357
           ||||||| ||||| ||||||||||||||||| |||||||| |||||||| || || | ||
Sbjct: 726 cttcctgaagaactgattgcaatgcagaaattgcaatctggacagtttcctcgtaggaga 667

                                                                       
Query: 358 actgcgggctatccttcattttcttctccagaaaatttattgcttcctgctccttaagtc 417
           |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 666 actgtgggtcatccttcattttcttctccagaaaatttattgcttcctgctccttaagac 607

                                                         
Query: 418 cggcactagttgccttgtgtccaaagaagtgacctgcggggtcaca 463
           |||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 606 cggcgctagttgccttatgtccaaagaagtgacctgccgggtcaca 561



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 95  acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 142
           |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 950 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 903

---

>dbj|AK059929.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-A07, full
           insert sequence
          Length = 1042

 Score =  361 bits (182), Expect = 1e-96
 Identities = 260/286 (90%)
 Strand = Plus / Minus

                                                                       
Query: 178 tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtg 237
           |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 859 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtgagtg 800

                                                                       
Query: 238 accggaagacacggtcttctttcctcacaacaccgacctcgatctcggtagccttgaaat 297
             | ||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 799 ctctgaaaacacgatcatctttcctcacaacaccgacctcaatctcggtggccttgaaat 740

                                                                       
Query: 298 cttcctgcagaacagattgcaatgcagaaatcgcaatctgaacagtttcgtcatatgtga 357
           ||||||| ||||| ||||||||||||||||| |||||||| |||||||| || || | ||
Sbjct: 739 cttcctgaagaactgattgcaatgcagaaattgcaatctggacagtttcctcgtaggaga 680

                                                                       
Query: 358 actgcgggctatccttcattttcttctccagaaaatttattgcttcctgctccttaagtc 417
           |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 679 actgtgggtcatccttcattttcttctccagaaaatttattgcttcctgctccttaagac 620

                                                         
Query: 418 cggcactagttgccttgtgtccaaagaagtgacctgcggggtcaca 463
           |||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 619 cggcgctagttgccttatgtccaaagaagtgacctgccgggtcaca 574



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 95  acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 142
           |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 963 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 916

---

>dbj|AB026558.1| Oryza sativa (japonica cultivar-group) OsPAA1 mRNA for alpha 1
           subunit of 20S proteasome, complete cds
          Length = 1010

 Score =  361 bits (182), Expect = 1e-96
 Identities = 260/286 (90%)
 Strand = Plus / Minus

                                                                       
Query: 178 tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtg 237
           |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 824 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtgagtg 765

                                                                       
Query: 238 accggaagacacggtcttctttcctcacaacaccgacctcgatctcggtagccttgaaat 297
             | ||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 764 ctctgaaaacacgatcatctttcctcacaacaccgacctcaatctcggtggccttgaaat 705

                                                                       
Query: 298 cttcctgcagaacagattgcaatgcagaaatcgcaatctgaacagtttcgtcatatgtga 357
           ||||||| ||||| ||||||||||||||||| |||||||| |||||||| || || | ||
Sbjct: 704 cttcctgaagaactgattgcaatgcagaaattgcaatctggacagtttcctcgtaggaga 645

                                                                       
Query: 358 actgcgggctatccttcattttcttctccagaaaatttattgcttcctgctccttaagtc 417
           |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 644 actgtgggtcatccttcattttcttctccagaaaatttattgcttcctgctccttaagac 585

                                                         
Query: 418 cggcactagttgccttgtgtccaaagaagtgacctgcggggtcaca 463
           |||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 584 cggcgctagttgccttatgtccaaagaagtgacctgccgggtcaca 539



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 95  acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 142
           |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 928 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 881

---

>ref|XM_470540.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 741

 Score =  353 bits (178), Expect = 3e-94
 Identities = 256/282 (90%)
 Strand = Plus / Minus

                                                                       
Query: 182 tcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtgaccg 241
           |||||||||||| || |||||||||||||||||||| |||||||||||||||||||  | 
Sbjct: 741 tcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtgagtgctct 682

                                                                       
Query: 242 gaagacacggtcttctttcctcacaacaccgacctcgatctcggtagccttgaaatcttc 301
           ||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 681 gaaaacacgatcatctttcctcacaacaccgacctcaatctcggtggccttgaaatcttc 622

                                                                       
Query: 302 ctgcagaacagattgcaatgcagaaatcgcaatctgaacagtttcgtcatatgtgaactg 361
           ||| ||||| ||||||||||||||||| |||||||| |||||||| || || | ||||||
Sbjct: 621 ctgaagaactgattgcaatgcagaaattgcaatctggacagtttcctcgtaggagaactg 562

                                                                       
Query: 362 cgggctatccttcattttcttctccagaaaatttattgcttcctgctccttaagtccggc 421
            |||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 tgggtcatccttcattttcttctccagaaaatttattgcttcctgctccttaagaccggc 502

                                                     
Query: 422 actagttgccttgtgtccaaagaagtgacctgcggggtcaca 463
            ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 501 gctagttgccttatgtccaaagaagtgacctgccgggtcaca 460

---

>dbj|AK104324.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G09, full
           insert sequence
          Length = 995

 Score =  353 bits (178), Expect = 3e-94
 Identities = 259/286 (90%)
 Strand = Plus / Minus

                                                                       
Query: 178 tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtg 237
           |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 846 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtgagtg 787

                                                                       
Query: 238 accggaagacacggtcttctttcctcacaacaccgacctcgatctcggtagccttgaaat 297
             | ||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 786 ctctgaaaacacgatcatctttcctcacaacaccgacctcaatctcggtggccttgaaat 727

                                                                       
Query: 298 cttcctgcagaacagattgcaatgcagaaatcgcaatctgaacagtttcgtcatatgtga 357
           ||||||| ||||| ||||||||||||||||| |||||||| |||||||| || || | ||
Sbjct: 726 cttcctgaagaactgattgcaatgcagaaattgcaatctggacagtttcctcgtaggaga 667

                                                                       
Query: 358 actgcgggctatccttcattttcttctccagaaaatttattgcttcctgctccttaagtc 417
           |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 666 actgtgggtcatccttcattttcttctccagaaaatttattgcttcctgctccttaagac 607

                                                         
Query: 418 cggcactagttgccttgtgtccaaagaagtgacctgcggggtcaca 463
            ||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 606 tggcgctagttgccttatgtccaaagaagtgacctgccgggtcaca 561



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 95  acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 142
           |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 950 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 903

---

>emb|AJ293343.1|ZMA293343 Zea mays mRNA for maize 20S proteasome alpha subunit (paa gene)
          Length = 1040

 Score =  281 bits (142), Expect = 1e-72
 Identities = 250/286 (87%)
 Strand = Plus / Minus

                                                                       
Query: 181 ctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtgacc 240
           ||||||| || || ||||| || || ||||||||||| ||||||||||||||||| |  |
Sbjct: 823 ctcagtcacgttcactaattgccgtcaggtgctgatcgatctcctctgtcgtgagagctc 764

                                                                       
Query: 241 ggaagacacggtcttctttcctcacaacaccgacctcgatctcggtagccttgaaatctt 300
            ||| || ||||| ||||| ||||||||||| || |||||||| || |||||||||||||
Sbjct: 763 tgaaaacgcggtcatcttttctcacaacaccaacttcgatctcagtggccttgaaatctt 704

                                                                       
Query: 301 cctgcagaacagattgcaatgcagaaatcgcaatctgaacagtttcgtcatatgtgaact 360
           |||| ||||| |||||||| ||||| || |||||||| |||||||||||||| ||||| |
Sbjct: 703 cctggagaactgattgcaacgcagatattgcaatctgcacagtttcgtcataggtgaatt 644

                                                                       
Query: 361 gcgggctatccttcattttcttctccagaaaatttattgcttcctgctccttaagtccgg 420
            ||||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 643 tcgggtcatccttcattttcttctccagaaaatttattgcttcctgctccttgagcccgg 584

                                                         
Query: 421 cactagttgccttgtgtccaaagaagtgacctgcggggtcacactt 466
           ||||||||||||| ||||||||||||||||| || ||||| |||||
Sbjct: 583 cactagttgccttatgtccaaagaagtgaccagcagggtcgcactt 538

---

>gb|AY104377.1| Zea mays PCO108605 mRNA sequence
          Length = 1142

 Score =  266 bits (134), Expect = 6e-68
 Identities = 245/282 (86%)
 Strand = Plus / Minus

                                                                       
Query: 179 agctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtga 238
           ||||||||| || || ||||| || || |||||||| |||||||||||||| |||||   
Sbjct: 834 agctcagtcccgttcactaattgccgtcaggtgctggtcaatctcctctgttgtgagaac 775

                                                                       
Query: 239 ccggaagacacggtcttctttcctcacaacaccgacctcgatctcggtagccttgaaatc 298
            | ||| | ||| |||||||| ||||||||||| || |||||||| || |||||||||||
Sbjct: 774 tctgaaaagacgttcttcttttctcacaacaccaacttcgatctcagtggccttgaaatc 715

                                                                       
Query: 299 ttcctgcagaacagattgcaatgcagaaatcgcaatctgaacagtttcgtcatatgtgaa 358
           |||||| ||||| |||||||||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 714 ttcctggagaactgattgcaatgcagatattgcaatctgaacagtttcatcataggtgaa 655

                                                                       
Query: 359 ctgcgggctatccttcattttcttctccagaaaatttattgcttcctgctccttaagtcc 418
            | ||||  |||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct: 654 tttcgggtcatccttcattttcttctccaaaaaatttattgcttcctgctccttgagccc 595

                                                     
Query: 419 ggcactagttgccttgtgtccaaagaagtgacctgcggggtc 460
           ||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 594 ggcactagttgccttatgtccaaagaagtgacccgcagggtc 553

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  125 bits (63), Expect = 1e-25
 Identities = 90/99 (90%)
 Strand = Plus / Plus

                                                                           
Query: 178     tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtg 237
               |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 4192401 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtgagtg 4192460

                                                      
Query: 238     accggaagacacggtcttctttcctcacaacaccgacct 276
                 | ||| ||||| || ||||||||||||||||||||||
Sbjct: 4192461 ctctgaaaacacgatcatctttcctcacaacaccgacct 4192499



 Score =  115 bits (58), Expect = 1e-22
 Identities = 85/94 (90%)
 Strand = Plus / Plus

                                                                           
Query: 339     acagtttcgtcatatgtgaactgcgggctatccttcattttcttctccagaaaatttatt 398
               |||||||| || || | |||||| |||  |||||||||||||||||||||||||||||||
Sbjct: 4192732 acagtttcctcgtaggagaactgtgggtcatccttcattttcttctccagaaaatttatt 4192791

                                                 
Query: 399     gcttcctgctccttaagtccggcactagttgcct 432
               ||||||||||||||||| ||||| ||||||||||
Sbjct: 4192792 gcttcctgctccttaagaccggcgctagttgcct 4192825



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                           
Query: 273     acctcgatctcggtagccttgaaatcttcctgcagaacagattgcaatgcagaaatcgca 332
               ||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 4192583 acctcaatctcggtggccttgaaatcttcctgaagaactgattgcaatgcagaaattgca 4192642

                    
Query: 333     atctg 337
               |||||
Sbjct: 4192643 atctg 4192647



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                               
Query: 95      acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 142
               |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 4192297 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 4192344



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                 
Query: 430     ccttgtgtccaaagaagtgacctgcggggtcaca 463
               |||| |||||||||||||||||||| ||||||||
Sbjct: 4192978 ccttatgtccaaagaagtgacctgccgggtcaca 4193011

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  125 bits (63), Expect = 1e-25
 Identities = 90/99 (90%)
 Strand = Plus / Plus

                                                                           
Query: 178     tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtg 237
               |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 4192510 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtgagtg 4192569

                                                      
Query: 238     accggaagacacggtcttctttcctcacaacaccgacct 276
                 | ||| ||||| || ||||||||||||||||||||||
Sbjct: 4192570 ctctgaaaacacgatcatctttcctcacaacaccgacct 4192608



 Score =  115 bits (58), Expect = 1e-22
 Identities = 85/94 (90%)
 Strand = Plus / Plus

                                                                           
Query: 339     acagtttcgtcatatgtgaactgcgggctatccttcattttcttctccagaaaatttatt 398
               |||||||| || || | |||||| |||  |||||||||||||||||||||||||||||||
Sbjct: 4192841 acagtttcctcgtaggagaactgtgggtcatccttcattttcttctccagaaaatttatt 4192900

                                                 
Query: 399     gcttcctgctccttaagtccggcactagttgcct 432
               ||||||||||||||||| ||||| ||||||||||
Sbjct: 4192901 gcttcctgctccttaagaccggcgctagttgcct 4192934



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                           
Query: 273     acctcgatctcggtagccttgaaatcttcctgcagaacagattgcaatgcagaaatcgca 332
               ||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 4192692 acctcaatctcggtggccttgaaatcttcctgaagaactgattgcaatgcagaaattgca 4192751

                    
Query: 333     atctg 337
               |||||
Sbjct: 4192752 atctg 4192756



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                               
Query: 95      acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 142
               |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 4192406 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 4192453



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                 
Query: 430     ccttgtgtccaaagaagtgacctgcggggtcaca 463
               |||| |||||||||||||||||||| ||||||||
Sbjct: 4193087 ccttatgtccaaagaagtgacctgccgggtcaca 4193120

---

>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0050H14, complete sequence
          Length = 142245

 Score =  125 bits (63), Expect = 1e-25
 Identities = 90/99 (90%)
 Strand = Plus / Plus

                                                                         
Query: 178   tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtg 237
             |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 93038 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtgagtg 93097

                                                    
Query: 238   accggaagacacggtcttctttcctcacaacaccgacct 276
               | ||| ||||| || ||||||||||||||||||||||
Sbjct: 93098 ctctgaaaacacgatcatctttcctcacaacaccgacct 93136



 Score =  115 bits (58), Expect = 1e-22
 Identities = 85/94 (90%)
 Strand = Plus / Plus

                                                                         
Query: 339   acagtttcgtcatatgtgaactgcgggctatccttcattttcttctccagaaaatttatt 398
             |||||||| || || | |||||| |||  |||||||||||||||||||||||||||||||
Sbjct: 93369 acagtttcctcgtaggagaactgtgggtcatccttcattttcttctccagaaaatttatt 93428

                                               
Query: 399   gcttcctgctccttaagtccggcactagttgcct 432
             ||||||||||||||||| ||||| ||||||||||
Sbjct: 93429 gcttcctgctccttaagaccggcgctagttgcct 93462



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                         
Query: 273   acctcgatctcggtagccttgaaatcttcctgcagaacagattgcaatgcagaaatcgca 332
             ||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 93220 acctcaatctcggtggccttgaaatcttcctgaagaactgattgcaatgcagaaattgca 93279

                  
Query: 333   atctg 337
             |||||
Sbjct: 93280 atctg 93284



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                             
Query: 95    acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 142
             |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 92934 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 92981



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 430   ccttgtgtccaaagaagtgacctgcggggtcaca 463
             |||| |||||||||||||||||||| ||||||||
Sbjct: 93615 ccttatgtccaaagaagtgacctgccgggtcaca 93648

---

>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0076N15, complete sequence
          Length = 134307

 Score =  125 bits (63), Expect = 1e-25
 Identities = 90/99 (90%)
 Strand = Plus / Plus

                                                                         
Query: 178   tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtgagtg 237
             |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 21016 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtgagtg 21075

                                                    
Query: 238   accggaagacacggtcttctttcctcacaacaccgacct 276
               | ||| ||||| || ||||||||||||||||||||||
Sbjct: 21076 ctctgaaaacacgatcatctttcctcacaacaccgacct 21114



 Score =  115 bits (58), Expect = 1e-22
 Identities = 85/94 (90%)
 Strand = Plus / Plus

                                                                         
Query: 339   acagtttcgtcatatgtgaactgcgggctatccttcattttcttctccagaaaatttatt 398
             |||||||| || || | |||||| |||  |||||||||||||||||||||||||||||||
Sbjct: 21347 acagtttcctcgtaggagaactgtgggtcatccttcattttcttctccagaaaatttatt 21406

                                               
Query: 399   gcttcctgctccttaagtccggcactagttgcct 432
             ||||||||||||||||| ||||| ||||||||||
Sbjct: 21407 gcttcctgctccttaagaccggcgctagttgcct 21440



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                         
Query: 273   acctcgatctcggtagccttgaaatcttcctgcagaacagattgcaatgcagaaatcgca 332
             ||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 21198 acctcaatctcggtggccttgaaatcttcctgaagaactgattgcaatgcagaaattgca 21257

                  
Query: 333   atctg 337
             |||||
Sbjct: 21258 atctg 21262



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                             
Query: 95    acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 142
             |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 20912 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 20959



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 430   ccttgtgtccaaagaagtgacctgcggggtcaca 463
             |||| |||||||||||||||||||| ||||||||
Sbjct: 21593 ccttatgtccaaagaagtgacctgccgggtcaca 21626

---

>gb|BT014031.1| Lycopersicon esculentum clone 133094R, mRNA sequence
          Length = 1053

 Score =  103 bits (52), Expect = 5e-19
 Identities = 172/212 (81%)
 Strand = Plus / Minus

                                                                       
Query: 252 tcttctttcctcacaacaccgacctcgatctcggtagccttgaaatcttcctgcagaaca 311
           |||||||| ||||||||||| ||||| || ||  | |||||||||||||| |||||||||
Sbjct: 748 tcttcttttctcacaacaccaacctcaatttcactggccttgaaatcttcttgcagaaca 689

                                                                       
Query: 312 gattgcaatgcagaaatcgcaatctgaacagtttcgtcatatgtgaactgcgggctatcc 371
           ||||| |  |||||||| |   ||||||||||||| ||||| | ||||   ||| |||  
Sbjct: 688 gattgaagagcagaaatagtggtctgaacagtttcctcataggagaacgcagggttattt 629

                                                                       
Query: 372 ttcattttcttctccagaaaatttattgcttcctgctccttaagtccggcactagttgcc 431
           |||||||||||||||| ||| || ||||| || ||||| |||  ||||||||| || |||
Sbjct: 628 ttcattttcttctccaaaaagttaattgcctcttgctctttagatccggcacttgtagcc 569

                                           
Query: 432 ttgtgtccaaagaagtgacctgcggggtcaca 463
           || || ||||| || ||||| || ||||||||
Sbjct: 568 ttatgaccaaaaaaatgaccagcagggtcaca 537

---

>ref|NM_122950.2| Arabidopsis thaliana PAA1; endopeptidase/ peptidase/ threonine
           endopeptidase AT5G35590 (PAA1) mRNA, complete cds
          Length = 1037

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 143/176 (81%)
 Strand = Plus / Minus

                                                                       
Query: 261 ctcacaacaccgacctcgatctcggtagccttgaaatcttcctgcagaacagattgcaat 320
           ||||| ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||| 
Sbjct: 711 ctcaccacacctacctcaatctcagtagccttgaagtcttcttgaagaacagattgcaaa 652

                                                                       
Query: 321 gcagaaatcgcaatctgaacagtttcgtcatatgtgaactgcgggctatccttcattttc 380
           || || || ||| |||| || ||||| ||| |||||||    ||| | || |||||||||
Sbjct: 651 gccgatatggcagtctgcacggtttcatcaaatgtgaaagatgggttttctttcattttc 592

                                                                   
Query: 381 ttctccagaaaatttattgcttcctgctccttaagtccggcactagttgccttgtg 436
           |||||||  ||||| | |||||| || ||||| |  || |||||||||||||||||
Sbjct: 591 ttctccaagaaattgactgcttcttgttccttcataccagcactagttgccttgtg 536

---

>emb|Y13691.1|ATY13691 Arabidopsis thaliana mRNA for proteasome subunit prc1
          Length = 976

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 143/176 (81%)
 Strand = Plus / Minus

                                                                       
Query: 261 ctcacaacaccgacctcgatctcggtagccttgaaatcttcctgcagaacagattgcaat 320
           ||||| ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||| 
Sbjct: 659 ctcaccacacctacctcaatctcagtagccttgaagtcttcttgaagaacagattgcaaa 600

                                                                       
Query: 321 gcagaaatcgcaatctgaacagtttcgtcatatgtgaactgcgggctatccttcattttc 380
           || || || ||| |||| || ||||| ||| |||||||    ||| | || |||||||||
Sbjct: 599 gccgatatggcagtctgcacggtttcatcaaatgtgaaagatgggttttctttcattttc 540

                                                                   
Query: 381 ttctccagaaaatttattgcttcctgctccttaagtccggcactagttgccttgtg 436
           |||||||  ||||| | |||||| || ||||| |  || |||||||||||||||||
Sbjct: 539 ttctccaagaaattgactgcttcttgttccttcataccagcactagttgccttgtg 484

---

>gb|AY114564.1| Arabidopsis thaliana multicatalytic endopeptidase complex alpha
           subunit-like (At5g35590) mRNA, complete cds
          Length = 777

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 143/176 (81%)
 Strand = Plus / Minus

                                                                       
Query: 261 ctcacaacaccgacctcgatctcggtagccttgaaatcttcctgcagaacagattgcaat 320
           ||||| ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||| 
Sbjct: 662 ctcaccacacctacctcaatctcagtagccttgaagtcttcttgaagaacagattgcaaa 603

                                                                       
Query: 321 gcagaaatcgcaatctgaacagtttcgtcatatgtgaactgcgggctatccttcattttc 380
           || || || ||| |||| || ||||| ||| |||||||    ||| | || |||||||||
Sbjct: 602 gccgatatggcagtctgcacggtttcatcaaatgtgaaagatgggttttctttcattttc 543

                                                                   
Query: 381 ttctccagaaaatttattgcttcctgctccttaagtccggcactagttgccttgtg 436
           |||||||  ||||| | |||||| || ||||| |  || |||||||||||||||||
Sbjct: 542 ttctccaagaaattgactgcttcttgttccttcataccagcactagttgccttgtg 487

---

>gb|AY092969.1| Arabidopsis thaliana multicatalytic endopeptidase complex alpha
           subunit-like (At5g35590) mRNA, complete cds
          Length = 1008

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 143/176 (81%)
 Strand = Plus / Minus

                                                                       
Query: 261 ctcacaacaccgacctcgatctcggtagccttgaaatcttcctgcagaacagattgcaat 320
           ||||| ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||| 
Sbjct: 711 ctcaccacacctacctcaatctcagtagccttgaagtcttcttgaagaacagattgcaaa 652

                                                                       
Query: 321 gcagaaatcgcaatctgaacagtttcgtcatatgtgaactgcgggctatccttcattttc 380
           || || || ||| |||| || ||||| ||| |||||||    ||| | || |||||||||
Sbjct: 651 gccgatatggcagtctgcacggtttcatcaaatgtgaaagatgggttttctttcattttc 592

                                                                   
Query: 381 ttctccagaaaatttattgcttcctgctccttaagtccggcactagttgccttgtg 436
           |||||||  ||||| | |||||| || ||||| |  || |||||||||||||||||
Sbjct: 591 ttctccaagaaattgactgcttcttgttccttcataccagcactagttgccttgtg 536

---

>emb|Y16644.1|NTY16644 Nicotiana tabacum mRNA for proteasome A-type subunit
          Length = 1035

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 171/215 (79%)
 Strand = Plus / Minus

                                                                       
Query: 252 tcttctttcctcacaacaccgacctcgatctcggtagccttgaaatcttcctgcagaaca 311
           ||||||||| |||||||||| ||||| || ||  | ||||| ||||| || ||||| |||
Sbjct: 739 tcttctttcttcacaacaccaacctcaatttcactggccttaaaatcctcttgcaggaca 680

                                                                       
Query: 312 gattgcaatgcagaaatcgcaatctgaacagtttcgtcatatgtgaactgcgggctatcc 371
           ||||| |  |||||||| ||| ||||||||||||| ||||| | |||    |||  ||  
Sbjct: 679 gattgaagagcagaaattgcagtctgaacagtttcctcataggagaaagcagggtcattt 620

                                                                       
Query: 372 ttcattttcttctccagaaaatttattgcttcctgctccttaagtccggcactagttgcc 431
           |||||||||||||||| |||||| ||||| || || || |||  ||| ||||| || |||
Sbjct: 619 ttcattttcttctccaaaaaattaattgcctcttgttctttagatccagcacttgtagcc 560

                                              
Query: 432 ttgtgtccaaagaagtgacctgcggggtcacactt 466
           || || ||||| || ||||| || |||||||||||
Sbjct: 559 ttatgaccaaaaaaatgaccagcagggtcacactt 525

---

>gb|AF043518.1|AF043518 Arabidopsis thaliana 20S proteasome subunit PAA1 (PAA1) mRNA,
           complete cds
          Length = 1029

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                       
Query: 261 ctcacaacaccgacctcgatctcggtagccttgaaatcttcctgcagaacagattgcaat 320
           ||||| ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||| 
Sbjct: 716 ctcaccacacctacctcaatctcagtagccttgaagtcttcttgaagaacagattgcaaa 657

                                                 
Query: 321 gcagaaatcgcaatctgaacagtttcgtcatatgtgaa 358
           || || || ||| |||| || ||||| ||| |||||||
Sbjct: 656 gccgatatggcagtctgcacggtttcatcaaatgtgaa 619

---

>gb|AF034572.1|AF034572 Glycine max proteasome IOTA subunit mRNA, complete cds
          Length = 994

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 136/171 (79%)
 Strand = Plus / Minus

                                                                       
Query: 273 acctcgatctcggtagccttgaaatcttcctgcagaacagattgcaatgcagaaatcgca 332
           ||||| ||||| || ||||| ||||| ||||| ||||| |||||||  |||||||| |||
Sbjct: 764 acctcaatctcagtggccttaaaatcctcctgaagaactgattgcagggcagaaatggca 705

                                                                       
Query: 333 atctgaacagtttcgtcatatgtgaactgcgggctatccttcattttcttctccagaaaa 392
            ||||||| || || |||||||| ||    |||  || |||||| ||||| ||||  |||
Sbjct: 704 gtctgaaccgtctcctcatatgtaaatgaagggtcattcttcatcttcttttccaagaaa 645

                                                              
Query: 393 tttattgcttcctgctccttaagtccggcactagttgccttgtgtccaaag 443
           || ||||| || || ||||| | ||| ||||| ||||||||||| ||||||
Sbjct: 644 ttaattgcctcttggtccttcaatccagcacttgttgccttgtgaccaaag 594

---

>dbj|AB023031.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2K18
          Length = 41465

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 273   acctcgatctcggtagccttgaaatcttcctgcagaacagattgcaa 319
             ||||| ||||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 16954 acctcaatctcagtagccttgaagtcttcttgaagaacagattgcaa 17000



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                         
Query: 372   ttcattttcttctccagaaaatttattgcttcctgctccttaagtccggcactagttgcc 431
             ||||||||||||||||  ||||| | |||||| || ||||| |  || ||||||||||||
Sbjct: 17230 ttcattttcttctccaagaaattgactgcttcttgttccttcataccagcactagttgcc 17289

              
Query: 432   t 432
             |
Sbjct: 17290 t 17290

---

>ref|NM_126597.2| Arabidopsis thaliana PAA2; endopeptidase/ peptidase/ threonine
           endopeptidase AT2G05840 (PAA2) transcript variant
           AT2G05840.1 mRNA, complete cds
          Length = 1093

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 138/176 (78%)
 Strand = Plus / Minus

                                                                       
Query: 261 ctcacaacaccgacctcgatctcggtagccttgaaatcttcctgcagaacagattgcaat 320
           |||||||| || ||||| || || || || ||||| ||||| || ||||||||||| |  
Sbjct: 778 ctcacaactcccacctcaatttcagttgctttgaagtcttcttgaagaacagattggaga 719

                                                                       
Query: 321 gcagaaatcgcaatctgaacagtttcgtcatatgtgaactgcgggctatccttcattttc 380
           || || || ||| |||| || ||||| |||||||||||    ||| | || |||||||||
Sbjct: 718 gcggatatagcagtctgtactgtttcatcatatgtgaaggcagggttttctttcattttc 659

                                                                   
Query: 381 ttctccagaaaatttattgcttcctgctccttaagtccggcactagttgccttgtg 436
           |||||||  ||||| | |||||| || || || |  || |||||||||||||||||
Sbjct: 658 ttctccaagaaattgactgcttcttgttctttcataccagcactagttgccttgtg 603

---

>gb|AY143829.1| Arabidopsis thaliana At2g05840/T6P5.4 mRNA, complete cds
          Length = 741

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 138/176 (78%)
 Strand = Plus / Minus

                                                                       
Query: 261 ctcacaacaccgacctcgatctcggtagccttgaaatcttcctgcagaacagattgcaat 320
           |||||||| || ||||| || || || || ||||| ||||| || ||||||||||| |  
Sbjct: 662 ctcacaactcccacctcaatttcagttgctttgaagtcttcttgaagaacagattggaga 603

                                                                       
Query: 321 gcagaaatcgcaatctgaacagtttcgtcatatgtgaactgcgggctatccttcattttc 380
           || || || ||| |||| || ||||| |||||||||||    ||| | || |||||||||
Sbjct: 602 gcggatatagcagtctgtactgtttcatcatatgtgaaggcagggttttctttcattttc 543

                                                                   
Query: 381 ttctccagaaaatttattgcttcctgctccttaagtccggcactagttgccttgtg 436
           |||||||  ||||| | |||||| || || || |  || |||||||||||||||||
Sbjct: 542 ttctccaagaaattgactgcttcttgttctttcataccagcactagttgccttgtg 487

---

>gb|AY052679.1| Arabidopsis thaliana At2g05840/T6P5.4 mRNA, complete cds
          Length = 1014

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 138/176 (78%)
 Strand = Plus / Minus

                                                                       
Query: 261 ctcacaacaccgacctcgatctcggtagccttgaaatcttcctgcagaacagattgcaat 320
           |||||||| || ||||| || || || || ||||| ||||| || ||||||||||| |  
Sbjct: 721 ctcacaactcccacctcaatttcagttgctttgaagtcttcttgaagaacagattggaga 662

                                                                       
Query: 321 gcagaaatcgcaatctgaacagtttcgtcatatgtgaactgcgggctatccttcattttc 380
           || || || ||| |||| || ||||| |||||||||||    ||| | || |||||||||
Sbjct: 661 gcggatatagcagtctgtactgtttcatcatatgtgaaggcagggttttctttcattttc 602

                                                                   
Query: 381 ttctccagaaaatttattgcttcctgctccttaagtccggcactagttgccttgtg 436
           |||||||  ||||| | |||||| || || || |  || |||||||||||||||||
Sbjct: 601 ttctccaagaaattgactgcttcttgttctttcataccagcactagttgccttgtg 546

---

>gb|AF043519.1|AF043519 Arabidopsis thaliana 20S proteasome subunit PAA2 (PAA2) mRNA,
           complete cds
          Length = 1113

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 138/176 (78%)
 Strand = Plus / Minus

                                                                       
Query: 261 ctcacaacaccgacctcgatctcggtagccttgaaatcttcctgcagaacagattgcaat 320
           |||||||| || ||||| || || || || ||||| ||||| || ||||||||||| |  
Sbjct: 778 ctcacaactcccacctcaatttcagttgctttgaagtcttcttgaagaacagattggaga 719

                                                                       
Query: 321 gcagaaatcgcaatctgaacagtttcgtcatatgtgaactgcgggctatccttcattttc 380
           || || || ||| |||| || ||||| |||||||||||    ||| | || |||||||||
Sbjct: 718 gcggatatagcagtctgtactgtttcatcatatgtgaaggcagggttttctttcattttc 659

                                                                   
Query: 381 ttctccagaaaatttattgcttcctgctccttaagtccggcactagttgccttgtg 436
           |||||||  ||||| | |||||| || || || |  || |||||||||||||||||
Sbjct: 658 ttctccaagaaattgactgcttcttgttctttcataccagcactagttgccttgtg 603

---

>emb|AL357559.16| Human DNA sequence from clone RP11-393M18 on chromosome 1 Contains a
            novel pseudogene, a farnesyl diphosphate synthase
            (farnesyl pyrophosphate synthetase,
            dimethylallyltranstransferase, geranyltranstransferase)
            (FDPS) pseudogene, a novel gene (LOC339476) and the 5'
            end of a solute carrier family 4 (anion exchanger) member
            1 adaptor protein (SLC4A1AP) pseudogene, complete
            sequence
          Length = 190912

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 305  cagaacagattgcaatgcagaaa 327
            |||||||||||||||||||||||
Sbjct: 2202 cagaacagattgcaatgcagaaa 2224

---

>ref|NM_001036263.1| Arabidopsis thaliana PAA2; endopeptidase/ peptidase/ threonine
           endopeptidase AT2G05840 (PAA2) transcript variant
           AT2G05840.2 mRNA, complete cds
          Length = 1114

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 115/146 (78%)
 Strand = Plus / Minus

                                                                       
Query: 291 ttgaaatcttcctgcagaacagattgcaatgcagaaatcgcaatctgaacagtttcgtca 350
           ||||| ||||| || ||||||||||| |  || || || ||| |||| || ||||| |||
Sbjct: 766 ttgaagtcttcttgaagaacagattggagagcggatatagcagtctgtactgtttcatca 707

                                                                       
Query: 351 tatgtgaactgcgggctatccttcattttcttctccagaaaatttattgcttcctgctcc 410
           ||||||||    ||| | || ||||||||||||||||  ||||| | |||||| || || 
Sbjct: 706 tatgtgaaggcagggttttctttcattttcttctccaagaaattgactgcttcttgttct 647

                                     
Query: 411 ttaagtccggcactagttgccttgtg 436
           || |  || |||||||||||||||||
Sbjct: 646 ttcataccagcactagttgccttgtg 621

---

>gb|AC098969.2| Homo sapiens chromosome 3 clone RP11-24O17, complete sequence
          Length = 158560

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 101   aatgattcactgaatgtttctt 122
             ||||||||||||||||||||||
Sbjct: 23257 aatgattcactgaatgtttctt 23236

---

>gb|AC156556.8| Mus musculus chromosome 7, clone RP23-92E8, complete sequence
          Length = 250903

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 392    atttattgcttcctgctcctt 412
              |||||||||||||||||||||
Sbjct: 125633 atttattgcttcctgctcctt 125613

---

>gb|AC022039.7| Homo sapiens chromosome 8, clone RP11-3G21, complete sequence
          Length = 176815

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 374    cattttcttctccagaaaatt 394
              |||||||||||||||||||||
Sbjct: 108314 cattttcttctccagaaaatt 108294

---

>gb|AC098818.3| Homo sapiens BAC clone RP11-109G23 from 4, complete sequence
          Length = 216451

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 130   catgaaacaaaataacagtttatgg 154
             |||||| ||||||||||||||||||
Sbjct: 59272 catgaagcaaaataacagtttatgg 59296

---

>dbj|AP003471.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1552D7
          Length = 160912

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 294    aaatcttcctgcagaacagat 314
              |||||||||||||||||||||
Sbjct: 125199 aaatcttcctgcagaacagat 125219

---

>dbj|AP002847.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1742H10
          Length = 155723

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 294   aaatcttcctgcagaacagat 314
             |||||||||||||||||||||
Sbjct: 44355 aaatcttcctgcagaacagat 44375

---

>gb|BC079919.1| Xenopus laevis MGC78853 protein, mRNA (cDNA clone MGC:78853
            IMAGE:3403020), complete cds
          Length = 3476

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  tgattcactgaatgtttctt 122
            ||||||||||||||||||||
Sbjct: 1751 tgattcactgaatgtttctt 1732

---

>gb|AC149071.3| Xenopus tropicalis BAC clone ISB10250N9 containing the Irx4 gene,
             complete cds, complete sequence
          Length = 84437

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    tagcaaattcaaccacacaaagga 47
             |||||||||||| |||||||||||
Sbjct: 33862 tagcaaattcaaacacacaaagga 33885

---

>gb|AC161289.2| Pan troglodytes BAC clone CH251-170B19 from chromosome 7, complete
             sequence
          Length = 151213

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   ttcattttcttctccagaaa 391
             ||||||||||||||||||||
Sbjct: 83638 ttcattttcttctccagaaa 83619

---

>gb|AC183672.2| Pan troglodytes BAC clone CH251-546K4 from chromosome 7, complete
             sequence
          Length = 231124

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   ttcattttcttctccagaaa 391
             ||||||||||||||||||||
Sbjct: 56287 ttcattttcttctccagaaa 56306

---

>gb|AY054381.1| Hordeum vulgare clone INS2 Sukkula retrotransposon, partial
           sequence
          Length = 3185

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 27  caaattcaaccacacaaaggatga 50
           |||||||||| |||||||||||||
Sbjct: 669 caaattcaacaacacaaaggatga 646

---

>gb|AC122418.4| Mus musculus BAC clone RP24-159E6 from chromosome 13, complete sequence
          Length = 221980

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    ggctatccttcattttcttc 383
              ||||||||||||||||||||
Sbjct: 220530 ggctatccttcattttcttc 220511

---

>gb|AC146024.3| Pan troglodytes BAC clone RP43-119C21 from 7, complete sequence
          Length = 139947

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   ttcattttcttctccagaaa 391
             ||||||||||||||||||||
Sbjct: 59626 ttcattttcttctccagaaa 59645

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    atgaaacaaaataacagttt 150
              ||||||||||||||||||||
Sbjct: 101716 atgaaacaaaataacagttt 101697

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    atgaaacaaaataacagttt 150
              ||||||||||||||||||||
Sbjct: 103233 atgaaacaaaataacagttt 103214

---

>gb|AC004128.1| Homo sapiens PAC clone RP5-850G1 from 7, complete sequence
          Length = 93904

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 372  ttcattttcttctccagaaa 391
            ||||||||||||||||||||
Sbjct: 7858 ttcattttcttctccagaaa 7839

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    atgaaacaaaataacagttt 150
              ||||||||||||||||||||
Sbjct: 135142 atgaaacaaaataacagttt 135161

---

>gb|AC183922.3| Pan troglodytes BAC clone CH251-344F10 from chromosome unknown, complete
              sequence
          Length = 146184

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    ttcattttcttctccagaaa 391
              ||||||||||||||||||||
Sbjct: 143853 ttcattttcttctccagaaa 143872

---

>emb|BX321911.6| Mouse DNA sequence from clone RP23-255M6 on chromosome 11 Contains a
             ribosomal protein L22 (Rpl22) pseudogene, complete
             sequence
          Length = 56399

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   aatgattcactgaatgtttc 120
             ||||||||||||||||||||
Sbjct: 22547 aatgattcactgaatgtttc 22566

---

>gb|AY128534.1| Homo sapiens cyclin-dependent kinase 6 (CDK6) gene, complete cds
          Length = 220803

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    ttcattttcttctccagaaa 391
              ||||||||||||||||||||
Sbjct: 137943 ttcattttcttctccagaaa 137962

---

>gb|AC161266.2| Mus musculus BAC clone RP23-231B13 from chromosome 13, complete sequence
          Length = 190192

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    ggctatccttcattttcttc 383
              ||||||||||||||||||||
Sbjct: 129910 ggctatccttcattttcttc 129929

---

>gb|AC149040.2| Medicago truncatula chromosome 7 BAC clone mth2-9f22, complete sequence
          Length = 120423

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   acagattgcaatgcagaaat 328
             ||||||||||||||||||||
Sbjct: 55920 acagattgcaatgcagaaat 55901

---

>gb|AC092598.2| Homo sapiens BAC clone RP11-114B11 from 2, complete sequence
          Length = 164798

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   attgcttcctgctccttaag 415
             ||||||||||||||||||||
Sbjct: 40377 attgcttcctgctccttaag 40358

---

>ref|XM_574455.1| PREDICTED: Rattus norvegicus similar to hypothetical protein
           (LOC499157), mRNA
          Length = 1040

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 tctcggtagccttgaaatcttcct 303
           ||||||||||||||||| ||||||
Sbjct: 92  tctcggtagccttgaaaccttcct 69

---

>gb|AC154868.3| Monodelphis domestica, clone XX-211C4, complete sequence
          Length = 129158

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aatgattcactgaatgtttc 120
             ||||||||||||||||||||
Sbjct: 41089 aatgattcactgaatgtttc 41070

---

>gb|AC133955.4| Mus musculus BAC clone RP23-249M4 from 6, complete sequence
          Length = 185272

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    ttgccttgtgtccaaagaag 446
              ||||||||||||||||||||
Sbjct: 100118 ttgccttgtgtccaaagaag 100137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,666,071
Number of Sequences: 3902068
Number of extensions: 4666071
Number of successful extensions: 122422
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 122256
Number of HSP's gapped (non-prelim): 156
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---