Clone Name | rbart24c12 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_187868.1| Oryza sativa (japonica cultivar-group), Ozsa8312 predicted mRNA Length = 1713 Score = 99.6 bits (50), Expect = 7e-18 Identities = 101/118 (85%) Strand = Plus / Minus Query: 103 acgatgccttcgttcccggtcagcatcatgtatttgtctttcctcgtctgcccggtgagc 162 |||| ||||||||| |||| ||||||||||| ||||| ||||| ||| |||||||||| Sbjct: 1667 acgacgccttcgttgccggcgagcatcatgtacttgtccttcctggtcatcccggtgagc 1608 Query: 163 tcgaacgctagcgcctcgccgagcacgcgctgcacccggttcgccacgtggatgctgt 220 |||||| | ||||||||||||| | ||||||||||||||||| ||| ||||||||| Sbjct: 1607 tcgaacccgagcgcctcgccgatctgtcgctgcacccggttcgcgacgcggatgctgt 1550 Score = 97.6 bits (49), Expect = 3e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 279 caggaattcgacgcggtactccggccgcggattcatcatgaagtagagcgggtcgagcac 338 |||||| |||||||||||| |||| ||| |||||||||||||||| ||||| | | Sbjct: 1509 caggaactcgacgcggtacgacggcttcgggttcatcatgaagtagaaggggtccatcca 1450 Query: 339 tttggacgccggcttggtggacgtgccgtagaacatgtcgacgcgcgtctcgagcgcgac 398 |||| ||||||| | || |||||||||| ||||||||||||||| | ||||||||||| Sbjct: 1449 cttggccgccggcgtcgtcgacgtgccgtggaacatgtcgacgcgggcgtcgagcgcgac 1390 Query: 399 gggggtaacctcggcggcgagctcggtgaacaacggg 435 |||| | || |||||| ||||||||| ||||| |||| Sbjct: 1389 ggggttcacgtcggcgccgagctcggcgaacagcggg 1353
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 99.6 bits (50), Expect = 7e-18 Identities = 101/118 (85%) Strand = Plus / Minus Query: 103 acgatgccttcgttcccggtcagcatcatgtatttgtctttcctcgtctgcccggtgagc 162 |||| ||||||||| |||| ||||||||||| ||||| ||||| ||| |||||||||| Sbjct: 8349781 acgacgccttcgttgccggcgagcatcatgtacttgtccttcctggtcatcccggtgagc 8349722 Query: 163 tcgaacgctagcgcctcgccgagcacgcgctgcacccggttcgccacgtggatgctgt 220 |||||| | ||||||||||||| | ||||||||||||||||| ||| ||||||||| Sbjct: 8349721 tcgaacccgagcgcctcgccgatctgtcgctgcacccggttcgcgacgcggatgctgt 8349664 Score = 97.6 bits (49), Expect = 3e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 279 caggaattcgacgcggtactccggccgcggattcatcatgaagtagagcgggtcgagcac 338 |||||| |||||||||||| |||| ||| |||||||||||||||| ||||| | | Sbjct: 8349623 caggaactcgacgcggtacgacggcttcgggttcatcatgaagtagaaggggtccatcca 8349564 Query: 339 tttggacgccggcttggtggacgtgccgtagaacatgtcgacgcgcgtctcgagcgcgac 398 |||| ||||||| | || |||||||||| ||||||||||||||| | ||||||||||| Sbjct: 8349563 cttggccgccggcgtcgtcgacgtgccgtggaacatgtcgacgcgggcgtcgagcgcgac 8349504 Query: 399 gggggtaacctcggcggcgagctcggtgaacaacggg 435 |||| | || |||||| ||||||||| ||||| |||| Sbjct: 8349503 ggggttcacgtcggcgccgagctcggcgaacagcggg 8349467
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0434D08 Length = 161266 Score = 99.6 bits (50), Expect = 7e-18 Identities = 101/118 (85%) Strand = Plus / Minus Query: 103 acgatgccttcgttcccggtcagcatcatgtatttgtctttcctcgtctgcccggtgagc 162 |||| ||||||||| |||| ||||||||||| ||||| ||||| ||| |||||||||| Sbjct: 143712 acgacgccttcgttgccggcgagcatcatgtacttgtccttcctggtcatcccggtgagc 143653 Query: 163 tcgaacgctagcgcctcgccgagcacgcgctgcacccggttcgccacgtggatgctgt 220 |||||| | ||||||||||||| | ||||||||||||||||| ||| ||||||||| Sbjct: 143652 tcgaacccgagcgcctcgccgatctgtcgctgcacccggttcgcgacgcggatgctgt 143595 Score = 97.6 bits (49), Expect = 3e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 279 caggaattcgacgcggtactccggccgcggattcatcatgaagtagagcgggtcgagcac 338 |||||| |||||||||||| |||| ||| |||||||||||||||| ||||| | | Sbjct: 143554 caggaactcgacgcggtacgacggcttcgggttcatcatgaagtagaaggggtccatcca 143495 Query: 339 tttggacgccggcttggtggacgtgccgtagaacatgtcgacgcgcgtctcgagcgcgac 398 |||| ||||||| | || |||||||||| ||||||||||||||| | ||||||||||| Sbjct: 143494 cttggccgccggcgtcgtcgacgtgccgtggaacatgtcgacgcgggcgtcgagcgcgac 143435 Query: 399 gggggtaacctcggcggcgagctcggtgaacaacggg 435 |||| | || |||||| ||||||||| ||||| |||| Sbjct: 143434 ggggttcacgtcggcgccgagctcggcgaacagcggg 143398
>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0503G09 Length = 59843 Score = 99.6 bits (50), Expect = 7e-18 Identities = 101/118 (85%) Strand = Plus / Minus Query: 103 acgatgccttcgttcccggtcagcatcatgtatttgtctttcctcgtctgcccggtgagc 162 |||| ||||||||| |||| ||||||||||| ||||| ||||| ||| |||||||||| Sbjct: 14407 acgacgccttcgttgccggcgagcatcatgtacttgtccttcctggtcatcccggtgagc 14348 Query: 163 tcgaacgctagcgcctcgccgagcacgcgctgcacccggttcgccacgtggatgctgt 220 |||||| | ||||||||||||| | ||||||||||||||||| ||| ||||||||| Sbjct: 14347 tcgaacccgagcgcctcgccgatctgtcgctgcacccggttcgcgacgcggatgctgt 14290 Score = 97.6 bits (49), Expect = 3e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 279 caggaattcgacgcggtactccggccgcggattcatcatgaagtagagcgggtcgagcac 338 |||||| |||||||||||| |||| ||| |||||||||||||||| ||||| | | Sbjct: 14249 caggaactcgacgcggtacgacggcttcgggttcatcatgaagtagaaggggtccatcca 14190 Query: 339 tttggacgccggcttggtggacgtgccgtagaacatgtcgacgcgcgtctcgagcgcgac 398 |||| ||||||| | || |||||||||| ||||||||||||||| | ||||||||||| Sbjct: 14189 cttggccgccggcgtcgtcgacgtgccgtggaacatgtcgacgcgggcgtcgagcgcgac 14130 Query: 399 gggggtaacctcggcggcgagctcggtgaacaacggg 435 |||| | || |||||| ||||||||| ||||| |||| Sbjct: 14129 ggggttcacgtcggcgccgagctcggcgaacagcggg 14093
>ref|XM_476278.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1614 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 274 ggctccaggaattcgacgcggtactccggccgcggattcatcatgaagtagagcgggtcg 333 |||| |||||| |||||| |||||||||| | || ||||| ||||||||||| ||||| Sbjct: 1430 ggctgcaggaactcgacgtggtactccggtctcgaattcagcatgaagtagaatgggtcc 1371 Query: 334 agcactttggacgccggcttggtggacgtgccgtagaacatgtcgacgcgcgtctcgagc 393 ||| |||| || ||||| || |||||||||||||||||||| | || ||||| ||| Sbjct: 1370 agccacttggcggcaggcttcgtcgacgtgccgtagaacatgtcaatccgtgtctccagc 1311 Query: 394 gcgacgggggtaacctcggcggcgagctc 422 || |||||||| |||||| ||| |||||| Sbjct: 1310 gcaacgggggtcacctcgccggtgagctc 1282 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 115 ttcccggtcagcatcatgtatttgtctttcctcgtctgcccggtgagctcgaacgctagc 174 ||||||| ||||||| ||| ||||| || | ||||||| | || |||||||| || ||| Sbjct: 1580 ttcccggccagcatctcgtacttgtcctttcgcgtctgctctgtcagctcgaatgcaagc 1521 Query: 175 gcctcgccgagcacgcgctgcaccc 199 |||||||||||||||||||| |||| Sbjct: 1520 gcctcgccgagcacgcgctgtaccc 1496
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12, complete sequence Length = 139627 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Plus Query: 274 ggctccaggaattcgacgcggtactccggccgcggattcatcatgaagtagagcgggtcg 333 |||| |||||| |||||| |||||||||| | || ||||| ||||||||||| ||||| Sbjct: 97755 ggctgcaggaactcgacgtggtactccggtctcgaattcagcatgaagtagaatgggtcc 97814 Query: 334 agcactttggacgccggcttggtggacgtgccgtagaacatgtcgacgcgcgtctcgagc 393 ||| |||| || ||||| || |||||||||||||||||||| | || ||||| ||| Sbjct: 97815 agccacttggcggcaggcttcgtcgacgtgccgtagaacatgtcaatccgtgtctccagc 97874 Query: 394 gcgacgggggtaacctcggcggcgagctc 422 || |||||||| |||||| ||| |||||| Sbjct: 97875 gcaacgggggtcacctcgccggtgagctc 97903 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 115 ttcccggtcagcatcatgtatttgtctttcctcgtctgcccggtgagctcgaacgctagc 174 ||||||| ||||||| ||| ||||| || | ||||||| | || |||||||| || ||| Sbjct: 97605 ttcccggccagcatctcgtacttgtcctttcgcgtctgctctgtcagctcgaatgcaagc 97664 Query: 175 gcctcgccgagcacgcgctgcaccc 199 |||||||||||||||||||| |||| Sbjct: 97665 gcctcgccgagcacgcgctgtaccc 97689
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Plus Query: 274 ggctccaggaattcgacgcggtactccggccgcggattcatcatgaagtagagcgggtcg 333 |||| |||||| |||||| |||||||||| | || ||||| ||||||||||| ||||| Sbjct: 11653320 ggctgcaggaactcgacgtggtactccggtctcgaattcagcatgaagtagaatgggtcc 11653379 Query: 334 agcactttggacgccggcttggtggacgtgccgtagaacatgtcgacgcgcgtctcgagc 393 ||| |||| || ||||| || |||||||||||||||||||| | || ||||| ||| Sbjct: 11653380 agccacttggcggcaggcttcgtcgacgtgccgtagaacatgtcaatccgtgtctccagc 11653439 Query: 394 gcgacgggggtaacctcggcggcgagctc 422 || |||||||| |||||| ||| |||||| Sbjct: 11653440 gcaacgggggtcacctcgccggtgagctc 11653468 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 115 ttcccggtcagcatcatgtatttgtctttcctcgtctgcccggtgagctcgaacgctagc 174 ||||||| ||||||| ||| ||||| || | ||||||| | || |||||||| || ||| Sbjct: 11653170 ttcccggccagcatctcgtacttgtcctttcgcgtctgctctgtcagctcgaatgcaagc 11653229 Query: 175 gcctcgccgagcacgcgctgcaccc 199 |||||||||||||||||||| |||| Sbjct: 11653230 gcctcgccgagcacgcgctgtaccc 11653254
>dbj|AK111471.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-E12, full insert sequence Length = 1881 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 274 ggctccaggaattcgacgcggtactccggccgcggattcatcatgaagtagagcgggtcg 333 |||| |||||| |||||| |||||||||| | || ||||| ||||||||||| ||||| Sbjct: 1480 ggctgcaggaactcgacgtggtactccggtctcgaattcagcatgaagtagaatgggtcc 1421 Query: 334 agcactttggacgccggcttggtggacgtgccgtagaacatgtcgacgcgcgtctcgagc 393 ||| |||| || ||||| || |||||||||||||||||||| | || ||||| ||| Sbjct: 1420 agccacttggcggcaggcttcgtcgacgtgccgtagaacatgtcaatccgtgtctccagc 1361 Query: 394 gcgacgggggtaacctcggcggcgagctc 422 || |||||||| |||||| ||| |||||| Sbjct: 1360 gcaacgggggtcacctcgccggtgagctc 1332 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 115 ttcccggtcagcatcatgtatttgtctttcctcgtctgcccggtgagctcgaacgctagc 174 ||||||| ||||||| ||| ||||| || | ||||||| | || |||||||| || ||| Sbjct: 1630 ttcccggccagcatctcgtacttgtcctttcgcgtctgctctgtcagctcgaatgcaagc 1571 Query: 175 gcctcgccgagcacgcgctgcaccc 199 |||||||||||||||||||| |||| Sbjct: 1570 gcctcgccgagcacgcgctgtaccc 1546
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 234 gccgtcctcctcgccgtcggcc 255 |||||||||||||||||||||| Sbjct: 424863 gccgtcctcctcgccgtcggcc 424884 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 234 gccgtcctcctcgccgtcggccacg 258 ||||||||||||||||||| ||||| Sbjct: 188542 gccgtcctcctcgccgtcgtccacg 188518
>gb|AC122210.5| Mus musculus BAC clone RP23-96G7 from chromosome 10, complete sequence Length = 231988 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 aaagaattacatcacagataa 52 ||||||||||||||||||||| Sbjct: 126593 aaagaattacatcacagataa 126613
>emb|CR352228.11| Zebrafish DNA sequence from clone CH211-104F13 in linkage group 23, complete sequence Length = 175139 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 aacactggtgaaaagaaatca 24 ||||||||||||||||||||| Sbjct: 47527 aacactggtgaaaagaaatca 47507
>gb|AC127891.2| Homo sapiens 12 BAC RP11-91I24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 113065 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 aaagaattacatcacagataa 52 ||||||||||||||||||||| Sbjct: 18324 aaagaattacatcacagataa 18344
>gb|AE012257.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 165 of 460 of the complete genome Length = 13121 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 gcgcctcgccgagcacgcgct 193 ||||||||||||||||||||| Sbjct: 6366 gcgcctcgccgagcacgcgct 6346
>gb|AC008631.6| Homo sapiens chromosome 5 clone CTB-163B16, complete sequence Length = 107857 Score = 42.1 bits (21), Expect = 1.5 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 9 tggtgaaaagaaatcaaagcaataaagaa 37 ||||||||| ||||||||||||||||||| Sbjct: 36576 tggtgaaaa-aaatcaaagcaataaagaa 36603
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gcgcctcgccgagcacgcgct 193 ||||||||||||||||||||| Sbjct: 3213077 gcgcctcgccgagcacgcgct 3213097
>gb|AC124156.3| Equus caballus clone CH241-280K8, complete sequence Length = 184661 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 actggtgaaaagaaatcaaag 27 ||||||||||||||||||||| Sbjct: 151513 actggtgaaaagaaatcaaag 151493
>gb|AF083948.1|AF083948 Pseudomonas sp. G-179 FNR-type regulatory protein (nnrR), NirV (nirV), Cu-type dissimilatory nitrite reductase (nirU), NapE (napE), ferrodoxin-like protein (napF), NapD (napD), periplasmic nitrate reductase large subunit precursor (napA), periplasmic nitrate reductase small subunit precursor (napB), cytochrome c binding protein (napC), anaerobic coproporphyrinogen III oxidase (hemN), TrkA-like protein (norD), putative chaperone (norQ), nitric oxide reductase large subunit precursor (norB), nitric oxide reductase small subunit precursor (norC), NorF (norF), cytochrome c oxidase polypetide III-like protein (norE), calcium or iron-binding protein (tpC), NnrU (nnrU), and ferrienterobactin-like protein (fepA) genes, complete cds Length = 20761 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 cctcgccgagcacgcgctgca 196 ||||||||||||||||||||| Sbjct: 14060 cctcgccgagcacgcgctgca 14080
>gb|U25810.1|BTU25810 Bos taurus lysozyme (LZ) gene, complete cds Length = 12039 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 aaacactggtgaaaagaaatcaaag 27 ||||||||||| ||||||||||||| Sbjct: 7114 aaacactggtggaaagaaatcaaag 7090
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 actggtgaaaagaaatcaaag 27 ||||||||||||||||||||| Sbjct: 813796 actggtgaaaagaaatcaaag 813776
>ref|NM_197735.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0042H09.17), mRNA Length = 1416 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 ctgcacccggttcgccacgtggatgctg 219 |||||||||||||||||| | ||||||| Sbjct: 1299 ctgcacccggttcgccacctcgatgctg 1272
>ref|XM_469743.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1236 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cgtcctcctcgccgtcggcc 255 |||||||||||||||||||| Sbjct: 967 cgtcctcctcgccgtcggcc 948
>gb|AC105744.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0009C07, complete sequence Length = 124266 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 227 tgtcgtggccgtcctcctcgccgtcggc 254 |||||||| ||||| ||||||||||||| Sbjct: 119283 tgtcgtggtcgtccacctcgccgtcggc 119310
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tcctcgccgtcggccacggt 260 |||||||||||||||||||| Sbjct: 3447324 tcctcgccgtcggccacggt 3447305
>ref|XM_362757.1| Magnaporthe grisea 70-15 hypothetical protein (MG08291.4) partial mRNA Length = 462 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 ggccgtcctcctcgccgtcg 252 |||||||||||||||||||| Sbjct: 12 ggccgtcctcctcgccgtcg 31
>gb|AC147708.7| Canis Familiaris, clone XX-25G10, complete sequence Length = 185084 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 16 aagaaatcaaagcaataaagaattacat 43 |||||||||||| |||||| |||||||| Sbjct: 136570 aagaaatcaaagaaataaaaaattacat 136597
>gb|DQ356948.1| Crocodilepox virus, complete genome Length = 190054 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gcgcctcgccgagcacgcgc 192 |||||||||||||||||||| Sbjct: 81770 gcgcctcgccgagcacgcgc 81751
>gb|AC120147.8| Mus musculus chromosome 19, clone RP24-223N20, complete sequence Length = 172853 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gcatcatgtatttgtctttc 144 |||||||||||||||||||| Sbjct: 30887 gcatcatgtatttgtctttc 30868
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cgtcctcctcgccgtcggcc 255 |||||||||||||||||||| Sbjct: 30504774 cgtcctcctcgccgtcggcc 30504793
>emb|AM055588.1| Erwinia amylovora partial recA gene for recombinase Length = 399 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gccgagcacgcgctgcacccggtt 203 ||||||||||||||| |||||||| Sbjct: 16 gccgagcacgcgctggacccggtt 39
>ref|XM_799529.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503557.40) partial mRNA Length = 861 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 gcggattcatcatgaagtag 324 |||||||||||||||||||| Sbjct: 775 gcggattcatcatgaagtag 756
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 tcgtggccgtcctcctcgccgtcg 252 |||| ||||||||||||||||||| Sbjct: 146827 tcgttgccgtcctcctcgccgtcg 146804
>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13 Length = 348676 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tcctcgccgtcggccacggt 260 |||||||||||||||||||| Sbjct: 332496 tcctcgccgtcggccacggt 332477
>gb|AC162456.3| Mus musculus chromosome 19, clone RP23-406F15, complete sequence Length = 173042 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gcatcatgtatttgtctttc 144 |||||||||||||||||||| Sbjct: 58204 gcatcatgtatttgtctttc 58185
>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 11/14 Length = 318050 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tcctcgccgtcggccacggt 260 |||||||||||||||||||| Sbjct: 283080 tcctcgccgtcggccacggt 283061
>emb|AL645943.19| Mouse DNA sequence from clone RP23-130E22 on chromosome 11 Contains a prohibitin (Phb) pseudogene and a novel gene, complete sequence Length = 213383 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aaagaaatcaaagcaataaa 34 |||||||||||||||||||| Sbjct: 206158 aaagaaatcaaagcaataaa 206177
>gb|AC105746.10| Oryza sativa chromosome 10 BAC OSJNBb0086I08 genomic sequence, complete sequence Length = 126842 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 227 tgtcgtggccgtcctcctcgccgtcggc 254 |||||||| ||||| ||||||||||||| Sbjct: 5006 tgtcgtggtcgtccacctcgccgtcggc 5033
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 gatgcgcacctacttcttgg 91 |||||||||||||||||||| Sbjct: 1612497 gatgcgcacctacttcttgg 1612478
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 cgccgagcacgcgctgcacccggt 202 |||||||||||||||| ||||||| Sbjct: 3143693 cgccgagcacgcgctggacccggt 3143670
>gb|AC105271.2| Homo sapiens chromosome 1 clone RP4-650F12, complete sequence Length = 112358 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aaatcaaagcaataaagaat 38 |||||||||||||||||||| Sbjct: 18184 aaatcaaagcaataaagaat 18203
>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence Length = 144191 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 192 ctgcacccggttcgccacgtggatgctg 219 |||||||||||||||||| | ||||||| Sbjct: 69035 ctgcacccggttcgccacctcgatgctg 69062
>gb|AC093158.2| Homo sapiens chromosome 1 clone RP11-439H8, complete sequence Length = 179582 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aaatcaaagcaataaagaat 38 |||||||||||||||||||| Sbjct: 157257 aaatcaaagcaataaagaat 157276
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cgtcctcctcgccgtcggcc 255 |||||||||||||||||||| Sbjct: 36347 cgtcctcctcgccgtcggcc 36366
>gb|AC150443.2| Medicago truncatula chromosome 7 BAC clone mth2-71o19, complete sequence Length = 132097 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gaaatcaaagcaataaagaa 37 |||||||||||||||||||| Sbjct: 22886 gaaatcaaagcaataaagaa 22867
>gb|AY217071.1| Erwinia amylovora strain Kp1 recombinase A (recA) gene, partial cds Length = 623 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gccgagcacgcgctgcacccggtt 203 ||||||||||||||| |||||||| Sbjct: 160 gccgagcacgcgctggacccggtt 183
>gb|AY217070.1| Erwinia amylovora strain Earb7 recombinase A (recA) gene, partial cds Length = 623 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gccgagcacgcgctgcacccggtt 203 ||||||||||||||| |||||||| Sbjct: 160 gccgagcacgcgctggacccggtt 183
>gb|AY217069.1| Erwinia amylovora strain P1 recombinase A (recA) gene, partial cds Length = 623 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gccgagcacgcgctgcacccggtt 203 ||||||||||||||| |||||||| Sbjct: 160 gccgagcacgcgctggacccggtt 183
>gb|AY217068.1| Erwinia amylovora strain IL6 recombinase A (recA) gene, partial cds Length = 623 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gccgagcacgcgctgcacccggtt 203 ||||||||||||||| |||||||| Sbjct: 160 gccgagcacgcgctggacccggtt 183
>gb|AY217067.1| Erwinia amylovora strain Ka6 recombinase A (recA) gene, partial cds Length = 623 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gccgagcacgcgctgcacccggtt 203 ||||||||||||||| |||||||| Sbjct: 160 gccgagcacgcgctggacccggtt 183
>gb|AY217066.1| Erwinia amylovora strain 684 recombinase A (recA) gene, partial cds Length = 623 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gccgagcacgcgctgcacccggtt 203 ||||||||||||||| |||||||| Sbjct: 160 gccgagcacgcgctggacccggtt 183
>gb|AF399932.1|AF399932 Xanthomonas oryzae RecA gene cluster, complete sequence Length = 4188 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 cgccgagcacgcgctgcacccggt 202 |||||||||||||||| ||||||| Sbjct: 2644 cgccgagcacgcgctggacccggt 2667
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 ctgcacccggttcgccacgtggatgctg 219 |||||||||||||||||| | ||||||| Sbjct: 21541022 ctgcacccggttcgccacctcgatgctg 21540995 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 227 tgtcgtggccgtcctcctcgccgtcggc 254 |||||||| ||||| ||||||||||||| Sbjct: 5662116 tgtcgtggtcgtccacctcgccgtcggc 5662089
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cgtcctcctcgccgtcggcc 255 |||||||||||||||||||| Sbjct: 30596196 cgtcctcctcgccgtcggcc 30596215
>emb|BX469923.7| Zebrafish DNA sequence from clone RP71-3J3 in linkage group 5, complete sequence Length = 151639 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 agcaataaagaattacatca 45 |||||||||||||||||||| Sbjct: 22664 agcaataaagaattacatca 22683
>gb|AC013275.8| Homo sapiens BAC clone RP11-464C8 from 2, complete sequence Length = 174822 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tgaaaagaaatcaaagcaat 31 |||||||||||||||||||| Sbjct: 4499 tgaaaagaaatcaaagcaat 4480
>emb|AL772218.29| Mouse DNA sequence from clone RP23-129K21 on chromosome 2, complete sequence Length = 218427 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tgaaaagaaatcaaagcaat 31 |||||||||||||||||||| Sbjct: 177091 tgaaaagaaatcaaagcaat 177110
>dbj|AK068519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156O10, full insert sequence Length = 1447 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cgtcctcctcgccgtcggcc 255 |||||||||||||||||||| Sbjct: 1041 cgtcctcctcgccgtcggcc 1022
>gb|AF161183.1|AF161183 Burkholderia cepacia tryptophan halogenase (prnA), PrnB (prnB), PrnC (prnC), and PrnD (prnD) genes, complete cds Length = 8931 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 cgctagcgcctcgccgagcacgcg 191 |||| ||||||||||||||||||| Sbjct: 3121 cgcttgcgcctcgccgagcacgcg 3098
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 cgccgagcacgcgctgcacccggt 202 |||||||||||||||| ||||||| Sbjct: 3151000 cgccgagcacgcgctggacccggt 3150977
>emb|AL929062.10| Mouse DNA sequence from clone RP23-342J9 on chromosome X, complete sequence Length = 212856 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aaagaaatcaaagcaataaa 34 |||||||||||||||||||| Sbjct: 7144 aaagaaatcaaagcaataaa 7125
>gb|AF013600.1| Xanthomonas oryzae pv. oryzae RecA (recA) gene, complete cds Length = 1278 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 cgccgagcacgcgctgcacccggt 202 |||||||||||||||| ||||||| Sbjct: 402 cgccgagcacgcgctggacccggt 425
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 ctgcacccggttcgccacgtggatgctg 219 |||||||||||||||||| | ||||||| Sbjct: 21552685 ctgcacccggttcgccacctcgatgctg 21552658 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 227 tgtcgtggccgtcctcctcgccgtcggc 254 |||||||| ||||| ||||||||||||| Sbjct: 5663303 tgtcgtggtcgtccacctcgccgtcggc 5663276
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 cgcctcgccgagcacgcgct 193 |||||||||||||||||||| Sbjct: 185749 cgcctcgccgagcacgcgct 185730
>emb|AL121766.5|CNS01DSA Human chromosome 14 DNA sequence BAC R-412H8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158064 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gtgaaaagaaatcaaagcaa 30 |||||||||||||||||||| Sbjct: 120432 gtgaaaagaaatcaaagcaa 120451 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,143,368 Number of Sequences: 3902068 Number of extensions: 3143368 Number of successful extensions: 68414 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 67583 Number of HSP's gapped (non-prelim): 824 length of query: 435 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 413 effective length of database: 17,147,199,772 effective search space: 7081793505836 effective search space used: 7081793505836 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)