ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LYS4_ENTHI (Q27650) Lysozyme (EC 3.2.1.17) (1,4-beta-N-acetylmur... 32 0.31
2YD73_SCHPO (Q10328) Putative homeobox protein C32A11.03c in chro... 29 3.5
3WNT8A_HUMAN (Q9H1J5) Protein Wnt-8a precursor (Wnt-8d) 28 4.5

>LYS4_ENTHI (Q27650) Lysozyme (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase)|
          Length = 198

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 14  TYNYRHRSSTPIIYPHKTTSTS 79
           +Y YR+RSSTP+ YPH   S S
Sbjct: 142 SYKYRYRSSTPLWYPHYDNSPS 163



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>YD73_SCHPO (Q10328) Putative homeobox protein C32A11.03c in chromosome I|
          Length = 942

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 131 YYCCTLFMVGFWKRTRWS 184
           Y+ CTL ++G WKR R S
Sbjct: 438 YFSCTLLVIGLWKRLRAS 455



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>WNT8A_HUMAN (Q9H1J5) Protein Wnt-8a precursor (Wnt-8d)|
          Length = 355

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 103 CSC*GTDNGCTCCFMWIYNGCTRSV 29
           C C G++NG T    WI+ GC+ +V
Sbjct: 112 CGCDGSNNGKTGGHGWIWGGCSDNV 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,046,617
Number of Sequences: 219361
Number of extensions: 673198
Number of successful extensions: 2133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2132
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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