ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Z69734.2|HSU71B4 Human DNA sequence from clone LL0XNC01-71B4... 44 0.26
2gb|AY121692.1| Drosophila melanogaster RE54419 full insert cDNA 44 0.26
3ref|NM_142397.1| Drosophila melanogaster CG14318-RA (CG14318), mRNA 44 0.26
4ref|NM_057829.3| Drosophila melanogaster Van Gogh CG8075-RA (Van... 44 0.26
5gb|AC093049.1| Drosophila melanogaster, chromosome 2R, region 45... 44 0.26
6gb|AC008186.5|AC008186 Drosophila melanogaster, chromosome 2R, r... 44 0.26
7gb|AC007810.6|AC007810 Drosophila melanogaster, chromosome 3R, r... 44 0.26
8gb|AC007811.5|AC007811 Drosophila melanogaster, chromosome 3R, r... 44 0.26
9gb|AE003719.3| Drosophila melanogaster chromosome 3R, section 57... 44 0.26
10gb|AE003834.3| Drosophila melanogaster chromosome 2R, section 16... 44 0.26
11gb|AC006074.1|AC006074 Drosophila melanogaster, chromosome 2R, r... 44 0.26
12gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.0
13gb|AC024771.1| Caenorhabditis elegans cosmid Y40B10A, complete s... 42 1.0
14gb|U42841.1| Caenorhabditis elegans cosmid T17H7, complete sequence 42 1.0
15emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 42 1.0
16emb|BX890550.10| Zebrafish DNA sequence from clone DKEYP-110B6 i... 42 1.0
17dbj|D86546.1| Drosophila melanogaster mRNA for still life type 2... 42 1.0
18emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in... 42 1.0
19ref|NM_064846.2| Caenorhabditis elegans GEX Interacting protein ... 42 1.0
20dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
21gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.0
22emb|AL162458.10| Human DNA sequence from clone RP11-465L10 on ch... 42 1.0
23gb|AC154042.1| Drosophila melanogaster clone BACR46E23, complete... 40 4.0
24gb|AC154514.2| Mus musculus BAC clone RP24-77G11 from chromosome... 40 4.0
25ref|XM_523037.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 4.0
26gb|AC079357.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
27ref|XM_369555.1| Magnaporthe grisea 70-15 chromosome III predict... 40 4.0
28gb|AC132211.1| Caenorhabditis elegans cosmid Y108F1, complete se... 40 4.0
29gb|AY530546.1| Mazus reptans floricaula (FLO) mRNA, FLOA paralog... 40 4.0
30emb|CR536615.10| Zebrafish DNA sequence from clone CH211-247C17 ... 40 4.0
31gb|AY445031.1| Lytechinus variegatus orthopedia mRNA, complete cds 40 4.0
32gb|AC018816.6| Homo sapiens chromosome 3 clone RP11-250A15 map 3... 40 4.0
33gb|AC010196.5| Homo sapiens 12 BAC RP11-202H2 (Roswell Park Canc... 40 4.0
34gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 4.0
35emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 40 4.0
36emb|AJ582817.3| Streptomyces kanamyceticus kanamycin biosyntheti... 40 4.0
37emb|BX927401.14| Zebrafish DNA sequence from clone CH211-210H11 ... 40 4.0
38gb|AC023691.3| Drosophila melanogaster X BAC RP98-12H1 (Roswell ... 40 4.0
39gb|AF107100.2| Ecotropis obliqua NPV Eo-Ld128, Eo-Ld127, ecdyste... 40 4.0
40dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 4.0
41ref|NM_140925.2| Drosophila melanogaster CG7323-RA (CG7323), mRNA 40 4.0
42ref|NM_132535.2| Drosophila melanogaster Selenoprotein G CG1844-... 40 4.0
43dbj|AK141597.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 4.0
44gb|AC009383.8| Drosophila melanogaster 3L BAC RP98-31C3 (Roswell... 40 4.0
45dbj|AK166396.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cD... 40 4.0
46gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome 40 4.0
47dbj|AK164911.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 4.0
48emb|BX571776.5| Zebrafish DNA sequence from clone CH211-139K15 i... 40 4.0
49gb|AF396454.1|AF396454 Drosophila melanogaster G-rich selenoprot... 40 4.0
50gb|AF035272.1|AF035272 Paramecium tetraurelia potassium channel ... 40 4.0
51dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
52ref|XM_392568.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 4.0
53gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone ... 40 4.0
54gb|AC024157.4|AC024157 Homo sapiens chromosome 3 clone RP11-233P... 40 4.0
55gb|AC015541.21|AC015541 Homo sapiens 3 BAC RP11-106B10 (Roswell ... 40 4.0
56gb|AY060611.1| Drosophila melanogaster GH03581 full insert cDNA 40 4.0
57gb|AC026162.5|AC026162 Homo sapiens chromosome 3 clone RP11-106B... 40 4.0
58dbj|AB164642.1| Streptomyces kanamyceticus kanamycin biosyntheti... 40 4.0
59dbj|AK109681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.0
60gb|L33180.1|NPHT3COMP Bombyx mori nuclear polyhedrosis virus iso... 40 4.0
61gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71... 40 4.0
62gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 ... 40 4.0
63emb|AJ628422.2| Streptomyces kanamyceticus partial kanamycin bio... 40 4.0
64emb|AL935173.9| Zebrafish DNA sequence from clone CH211-196D9, c... 40 4.0
65gb|AC132111.4| Mus musculus BAC clone RP24-200H19 from 14, compl... 40 4.0
66gb|M34501.1|SYNALKPHY Synthetic E.coli alkaline phosphatase gene... 40 4.0 
>emb|Z69734.2|HSU71B4 Human DNA sequence from clone LL0XNC01-71B4 on chromosome X Contains
            the 3'end of a novel gene and the 5' end of the gene for
            a novel protein similar to mouse Nik related kinase
            (Nrk), complete sequence
          Length = 23606

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 47   attatatatccacataaaacaa 68
            ||||||||||||||||||||||
Sbjct: 6180 attatatatccacataaaacaa 6201
to top
>gb|AY121692.1| Drosophila melanogaster RE54419 full insert cDNA
          Length = 3502

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 283 ggcggcggaggtggtggcggag 304
           ||||||||||||||||||||||
Sbjct: 413 ggcggcggaggtggtggcggag 434
to top
>ref|NM_142397.1| Drosophila melanogaster CG14318-RA (CG14318), mRNA
          Length = 4482

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 283  ggcggcggaggtggtggcggag 304
            ||||||||||||||||||||||
Sbjct: 1850 ggcggcggaggtggtggcggag 1829
to top
>ref|NM_057829.3| Drosophila melanogaster Van Gogh CG8075-RA (Vang), mRNA
          Length = 3486

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 283 ggcggcggaggtggtggcggag 304
           ||||||||||||||||||||||
Sbjct: 414 ggcggcggaggtggtggcggag 435
to top
>gb|AC093049.1| Drosophila melanogaster, chromosome 2R, region 45A-45A, BAC clone
             BACR08E17, complete sequence
          Length = 178262

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 283   ggcggcggaggtggtggcggag 304
             ||||||||||||||||||||||
Sbjct: 18688 ggcggcggaggtggtggcggag 18667
to top
>gb|AC008186.5|AC008186 Drosophila melanogaster, chromosome 2R, region 45A-46A, BAC clone
             BACR10M14, complete sequence
          Length = 189757

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 283   ggcggcggaggtggtggcggag 304
             ||||||||||||||||||||||
Sbjct: 31362 ggcggcggaggtggtggcggag 31383
to top
>gb|AC007810.6|AC007810 Drosophila melanogaster, chromosome 3R, region 90C-90C, BAC clone
              BACR14A01, complete sequence
          Length = 176735

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 283    ggcggcggaggtggtggcggag 304
              ||||||||||||||||||||||
Sbjct: 108414 ggcggcggaggtggtggcggag 108435
to top
>gb|AC007811.5|AC007811 Drosophila melanogaster, chromosome 3R, region 90C-90D, BAC clone
             BACR45M04, complete sequence
          Length = 171569

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 283   ggcggcggaggtggtggcggag 304
             ||||||||||||||||||||||
Sbjct: 30665 ggcggcggaggtggtggcggag 30686
to top
>gb|AE003719.3| Drosophila melanogaster chromosome 3R, section 57 of 118 of the
             complete sequence
          Length = 212941

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 283   ggcggcggaggtggtggcggag 304
             ||||||||||||||||||||||
Sbjct: 61636 ggcggcggaggtggtggcggag 61657
to top
>gb|AE003834.3| Drosophila melanogaster chromosome 2R, section 16 of 73 of the complete
             sequence
          Length = 243313

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 283   ggcggcggaggtggtggcggag 304
             ||||||||||||||||||||||
Sbjct: 38204 ggcggcggaggtggtggcggag 38225
to top
>gb|AC006074.1|AC006074 Drosophila melanogaster, chromosome 2R, region 44F12-45A4, P1 clones
             DS05998, DS07727, DS05175, and DS01885, complete sequence
          Length = 204617

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 283   ggcggcggaggtggtggcggag 304
             ||||||||||||||||||||||
Sbjct: 10500 ggcggcggaggtggtggcggag 10479
to top
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0005P21, complete sequence
          Length = 147381

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 282  aggcggcggaggtggtggcgg 302
            |||||||||||||||||||||
Sbjct: 6878 aggcggcggaggtggtggcgg 6898
to top
>gb|AC024771.1| Caenorhabditis elegans cosmid Y40B10A, complete sequence
          Length = 50398

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   aggcggcggaggtggtggcgg 302
             |||||||||||||||||||||
Sbjct: 17656 aggcggcggaggtggtggcgg 17676
to top
>gb|U42841.1| Caenorhabditis elegans cosmid T17H7, complete sequence
          Length = 31228

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 283  ggcggcggaggtggtggcgga 303
            |||||||||||||||||||||
Sbjct: 7622 ggcggcggaggtggtggcgga 7642
to top
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 64     aacaacaagtacatccattat 84
              |||||||||||||||||||||
Sbjct: 628559 aacaacaagtacatccattat 628579
to top
>emb|BX890550.10| Zebrafish DNA sequence from clone DKEYP-110B6 in linkage group 13,
             complete sequence
          Length = 174313

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 133   ttattgttgtactttatttat 153
             |||||||||||||||||||||
Sbjct: 51077 ttattgttgtactttatttat 51057
to top
>dbj|D86546.1| Drosophila melanogaster mRNA for still life type 2, complete cds
          Length = 9233

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 282 aggcggcggaggtggtggcgg 302
           |||||||||||||||||||||
Sbjct: 828 aggcggcggaggtggtggcgg 848
to top
>emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in linkage group 13,
             complete sequence
          Length = 193538

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 112   tactattatgtactctacttattat 136
             |||||||||||||| ||||||||||
Sbjct: 82233 tactattatgtactatacttattat 82209
to top
>ref|NM_064846.2| Caenorhabditis elegans GEX Interacting protein family member
           (gei-16) (gei-16) mRNA, complete cds
          Length = 3771

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 283 ggcggcggaggtggtggcgga 303
           |||||||||||||||||||||
Sbjct: 599 ggcggcggaggtggtggcgga 579
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 282      aggcggcggaggtggtggcgg 302
                |||||||||||||||||||||
Sbjct: 11606910 aggcggcggaggtggtggcgg 11606890
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 282      aggcggcggaggtggtggcgg 302
                |||||||||||||||||||||
Sbjct: 11686099 aggcggcggaggtggtggcgg 11686079
to top
>emb|AL162458.10| Human DNA sequence from clone RP11-465L10 on chromosome 20, complete
              sequence
          Length = 150791

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 264    gaaaggccaagggaaggaagg 284
              |||||||||||||||||||||
Sbjct: 141256 gaaaggccaagggaaggaagg 141236
to top
>gb|AC154042.1| Drosophila melanogaster clone BACR46E23, complete sequence
          Length = 181148

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    ggcggcggaggtggtggcgg 302
              ||||||||||||||||||||
Sbjct: 179136 ggcggcggaggtggtggcgg 179155
to top
>gb|AC154514.2| Mus musculus BAC clone RP24-77G11 from chromosome 9, complete sequence
          Length = 188944

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 124    ctctacttattattgttgtactttattt 151
              ||||||||||| ||||| ||||||||||
Sbjct: 131977 ctctacttatttttgttttactttattt 131950
to top
>ref|XM_523037.1| PREDICTED: Pan troglodytes similar to hypothetical protein
            (LOC467643), mRNA
          Length = 6321

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  ggcggcggaggtggtggcgg 302
            ||||||||||||||||||||
Sbjct: 4196 ggcggcggaggtggtggcgg 4177
to top
>gb|AC079357.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0033D06,
             complete sequence
          Length = 142659

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   ggcggcggaggtggtggcgg 302
             ||||||||||||||||||||
Sbjct: 81081 ggcggcggaggtggtggcgg 81062
to top
>ref|XM_369555.1| Magnaporthe grisea 70-15 chromosome III predicted protein
           (MG05909.4) partial mRNA
          Length = 615

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 ggcggcggaggtggtggcgg 302
           ||||||||||||||||||||
Sbjct: 36  ggcggcggaggtggtggcgg 17
to top
>gb|AC132211.1| Caenorhabditis elegans cosmid Y108F1, complete sequence
          Length = 25545

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  ggcggcggaggtggtggcgg 302
            ||||||||||||||||||||
Sbjct: 4961 ggcggcggaggtggtggcgg 4980
to top
>gb|AY530546.1| Mazus reptans floricaula (FLO) mRNA, FLOA paralog, partial cds
          Length = 1182

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 aggcggcggaggtggtggcg 301
           ||||||||||||||||||||
Sbjct: 108 aggcggcggaggtggtggcg 89
to top
>emb|CR536615.10| Zebrafish DNA sequence from clone CH211-247C17 in linkage group 1,
             complete sequence
          Length = 153688

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   ttattattgttgtactttatttat 153
             |||||||||||||| |||||||||
Sbjct: 21440 ttattattgttgtaatttatttat 21417
to top
>gb|AY445031.1| Lytechinus variegatus orthopedia mRNA, complete cds
          Length = 2090

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggcggcggaggtggtggcgg 302
           ||||||||||||||||||||
Sbjct: 484 ggcggcggaggtggtggcgg 503
to top
>gb|AC018816.6| Homo sapiens chromosome 3 clone RP11-250A15 map 3p, complete sequence
          Length = 168629

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 12     tgacatataattataggcacagat 35
              ||||||||||| ||||||||||||
Sbjct: 154204 tgacatataatcataggcacagat 154181
to top
>gb|AC010196.5| Homo sapiens 12 BAC RP11-202H2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163246

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 133    ttattgttgtactttatttatggt 156
              |||||||| |||||||||||||||
Sbjct: 156471 ttattgttatactttatttatggt 156448
to top
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 283     ggcggcggaggtggtggcgg 302
               ||||||||||||||||||||
Sbjct: 3912995 ggcggcggaggtggtggcgg 3913014
to top
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 278   aggaaggcggcggaggtggtggcg 301
             |||||||||||| |||||||||||
Sbjct: 22105 aggaaggcggcgaaggtggtggcg 22082
to top
>emb|AJ582817.3| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster, strain
             ATCC12853
          Length = 47050

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   ggtggaggagacgggaccga 227
             ||||||||||||||||||||
Sbjct: 22605 ggtggaggagacgggaccga 22624
to top
>emb|BX927401.14| Zebrafish DNA sequence from clone CH211-210H11 in linkage group 19,
             complete sequence
          Length = 137958

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   ggcggcggaggtggtggcgg 302
             ||||||||||||||||||||
Sbjct: 22232 ggcggcggaggtggtggcgg 22213
to top
>gb|AC023691.3| Drosophila melanogaster X BAC RP98-12H1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 179892

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   ggcggcggaggtggtggcgg 302
             ||||||||||||||||||||
Sbjct: 51399 ggcggcggaggtggtggcgg 51418
to top
>gb|AF107100.2| Ecotropis obliqua NPV Eo-Ld128, Eo-Ld127, ecdysteroid
             UDP-glucosyltransferase (egt), Eo-Ld124, late expression
             factor1 (Eo-lef1), 38.7K protein, ribonucleotide reductase
             (Eo-rr1), polyhedrin (Eo-ORF1), virus
             replication-essential protein (Eo-ORF2), protein kinase
             (Eo-ORF3), and hoar genes, complete cds
          Length = 15528

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   ggcggcggaggtggtggcgg 302
             ||||||||||||||||||||
Sbjct: 13694 ggcggcggaggtggtggcgg 13713
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 283     ggcggcggaggtggtggcgg 302
               ||||||||||||||||||||
Sbjct: 3399157 ggcggcggaggtggtggcgg 3399176
to top
>ref|NM_140925.2| Drosophila melanogaster CG7323-RA (CG7323), mRNA
          Length = 5051

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggcggcggaggtggtggcgg 302
           ||||||||||||||||||||
Sbjct: 523 ggcggcggaggtggtggcgg 542
to top
>ref|NM_132535.2| Drosophila melanogaster Selenoprotein G CG1844-RA (SelG), mRNA
          Length = 835

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggcggcggaggtggtggcgg 302
           ||||||||||||||||||||
Sbjct: 316 ggcggcggaggtggtggcgg 335
to top
>dbj|AK141597.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:C630038K16 product:sarcolemma
           associated protein, full insert sequence
          Length = 4617

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggcggcggaggtggtggcgg 302
           ||||||||||||||||||||
Sbjct: 62  ggcggcggaggtggtggcgg 81
to top
>gb|AC009383.8| Drosophila melanogaster 3L BAC RP98-31C3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 179283

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   ggcggcggaggtggtggcgg 302
             ||||||||||||||||||||
Sbjct: 85922 ggcggcggaggtggtggcgg 85903
to top
>dbj|AK166396.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN
           full-length enriched library, clone:G930008I16
           product:sarcolemma associated protein, full insert
           sequence
          Length = 2418

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggcggcggaggtggtggcgg 302
           ||||||||||||||||||||
Sbjct: 62  ggcggcggaggtggtggcgg 81
to top
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome
          Length = 1176248

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   ctacttattattgttgtact 145
             ||||||||||||||||||||
Sbjct: 23010 ctacttattattgttgtact 23029
to top
>dbj|AK164911.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
           library, clone:E030019G02 product:sarcolemma associated
           protein, full insert sequence
          Length = 2417

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggcggcggaggtggtggcgg 302
           ||||||||||||||||||||
Sbjct: 61  ggcggcggaggtggtggcgg 80
to top
>emb|BX571776.5| Zebrafish DNA sequence from clone CH211-139K15 in linkage group 23,
             complete sequence
          Length = 160455

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   tattgttgtactttatttat 153
             ||||||||||||||||||||
Sbjct: 96856 tattgttgtactttatttat 96875
to top
>gb|AF396454.1|AF396454 Drosophila melanogaster G-rich selenoprotein mRNA, complete cds
          Length = 849

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggcggcggaggtggtggcgg 302
           ||||||||||||||||||||
Sbjct: 316 ggcggcggaggtggtggcgg 335
to top
>gb|AF035272.1|AF035272 Paramecium tetraurelia potassium channel PAK1 protein (PAK1-mic)
            gene, micronuclear gene, partial cds
          Length = 2073

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  gtactctacttattattgtt 140
            ||||||||||||||||||||
Sbjct: 1382 gtactctacttattattgtt 1363
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 283     ggcggcggaggtggtggcgg 302
               ||||||||||||||||||||
Sbjct: 1768352 ggcggcggaggtggtggcgg 1768333
to top
>ref|XM_392568.2| PREDICTED: Apis mellifera similar to ENSANGP00000020108 (LOC409040),
            mRNA
          Length = 1394

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 278  aggaaggcggcggaggtggtggcg 301
            |||||||||| |||||||||||||
Sbjct: 1188 aggaaggcgggggaggtggtggcg 1165
to top
>gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0006E22,
             complete sequence
          Length = 128256

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   gggaaaggccaagggaagga 281
             ||||||||||||||||||||
Sbjct: 57747 gggaaaggccaagggaagga 57766
to top
>gb|AC024157.4|AC024157 Homo sapiens chromosome 3 clone RP11-233P1 map 3p, complete sequence
          Length = 160667

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 12    tgacatataattataggcacagat 35
             ||||||||||| ||||||||||||
Sbjct: 91573 tgacatataatcataggcacagat 91596
to top
>gb|AC015541.21|AC015541 Homo sapiens 3 BAC RP11-106B10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164516

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 12    tgacatataattataggcacagat 35
             ||||||||||| ||||||||||||
Sbjct: 36841 tgacatataatcataggcacagat 36864
to top
>gb|AY060611.1| Drosophila melanogaster GH03581 full insert cDNA
          Length = 849

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggcggcggaggtggtggcgg 302
           ||||||||||||||||||||
Sbjct: 316 ggcggcggaggtggtggcgg 335
to top
>gb|AC026162.5|AC026162 Homo sapiens chromosome 3 clone RP11-106B10 map 3p, complete sequence
          Length = 164557

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 12     tgacatataattataggcacagat 35
              ||||||||||| ||||||||||||
Sbjct: 127708 tgacatataatcataggcacagat 127685
to top
>dbj|AB164642.1| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster,
            complete cds
          Length = 25467

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 208  ggtggaggagacgggaccga 227
            ||||||||||||||||||||
Sbjct: 5314 ggtggaggagacgggaccga 5333
to top
>dbj|AK109681.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D01, full
            insert sequence
          Length = 1785

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  ggcggcggaggtggtggcgg 302
            ||||||||||||||||||||
Sbjct: 1303 ggcggcggaggtggtggcgg 1322
to top
>gb|L33180.1|NPHT3COMP Bombyx mori nuclear polyhedrosis virus isolate T3, complete genome
          Length = 128413

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  ggcggcggaggtggtggcgg 302
            ||||||||||||||||||||
Sbjct: 1534 ggcggcggaggtggtggcgg 1553
to top
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete
              sequence
          Length = 299903

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    ggcggcggaggtggtggcgg 302
              ||||||||||||||||||||
Sbjct: 128939 ggcggcggaggtggtggcgg 128920
to top
>gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 of 74 of the complete
              sequence
          Length = 308317

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    ggcggcggaggtggtggcgg 302
              ||||||||||||||||||||
Sbjct: 178840 ggcggcggaggtggtggcgg 178859
to top
>emb|AJ628422.2| Streptomyces kanamyceticus partial kanamycin biosynthesis gene cluster,
             strain DSM 40500
          Length = 41576

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   ggtggaggagacgggaccga 227
             ||||||||||||||||||||
Sbjct: 19378 ggtggaggagacgggaccga 19397
to top
>emb|AL935173.9| Zebrafish DNA sequence from clone CH211-196D9, complete sequence
          Length = 205213

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 130    ttattattgttgtactttatttat 153
              |||||||||||||| |||||||||
Sbjct: 133013 ttattattgttgtaatttatttat 133036
to top
>gb|AC132111.4| Mus musculus BAC clone RP24-200H19 from 14, complete sequence
          Length = 174164

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   ggcggcggaggtggtggcgg 302
             ||||||||||||||||||||
Sbjct: 79645 ggcggcggaggtggtggcgg 79626
to top
>gb|M34501.1|SYNALKPHY Synthetic E.coli alkaline phosphatase gene, partial cds
          Length = 52

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 ggcggcggaggtggtggcgg 302
           ||||||||||||||||||||
Sbjct: 16  ggcggcggaggtggtggcgg 35


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,281,901
Number of Sequences: 3902068
Number of extensions: 3281901
Number of successful extensions: 70577
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70313
Number of HSP's gapped (non-prelim): 264
length of query: 304
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 282
effective length of database: 17,147,199,772
effective search space: 4835510335704
effective search space used: 4835510335704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top