>Y3309_BURMA (Q62EU9) UPF0271 protein BMA3309|
          Length = 254

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 246 ATDGIHEPGDAGRAATGRDVPARVLH-GVLRDLGRLAAAAQPQGLRVARVR 395
           A    H+P + GR     D+PA  ++ GVL  LG L+A AQ +G R+A V+
Sbjct: 56  AHPSFHDPENFGRKEM--DLPASEIYAGVLYQLGALSAIAQAEGGRIAHVK 104

>Y257_BURPS (Q63YD1) UPF0271 protein BPSL0257|
          Length = 254

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 246 ATDGIHEPGDAGRAATGRDVPARVLH-GVLRDLGRLAAAAQPQGLRVARVR 395
           A    H+P + GR     D+PA  ++ GVL  LG L+A AQ +G R+A V+
Sbjct: 56  AHPSFHDPENFGRKEM--DLPASEIYAGVLYQLGALSAFAQAEGGRIAHVK 104

>U131_ARATH (Q9M8T3) Hypothetical UPF0131 protein At3g02910|
          Length = 182

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -2

Query: 407 EAYFANASYAEALWLRCGGEAAEIAEYTMEHAGRYVPPSGRSPGVSGLMDAVRGFLAT 234
           EAY+A+ SY E LW R  G +     YT   A  YV  + R   +S  +D +R F+++
Sbjct: 125 EAYYAHKSYEEELWRRNRGRS--FGAYTENEARGYVKRNDRPQHLS-FLDHIRIFVSS 179

>CSPG4_HUMAN (Q6UVK1) Chondroitin sulfate proteoglycan 4 precursor (Chondroitin|
            sulfate proteoglycan NG2) (Melanoma chondroitin sulfate
            proteoglycan) (Melanoma-associated chondroitin sulfate
            proteoglycan)
          Length = 2322

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -2

Query: 353  GEAAEIAEYTMEHAGRYVPP-----SGRSPGVSGLMDAV-RGFLATAPPA 222
            GEAAEI    +E A   VPP     S +SP  +G +  V RG LA  PP+
Sbjct: 1252 GEAAEIRRDQLEAAQEAVPPADIVFSVKSPPSAGYLVMVSRGALADEPPS 1301

>PSB2_NEUCR (Q9P6U7) Probable proteasome subunit beta type 2 (EC 3.4.25.1)|
          Length = 203

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 353 GEAAEIAEYTMEHAGRYVPPSGRSPGVSGLMDAVRGFLATA 231
           G+  + AEYT  +A  Y   +G     S L + VRG LAT+
Sbjct: 51  GDTVQFAEYTQANAQLYSMRNGTDLSPSALANFVRGELATS 91

>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal
            proliferator-activated receptor A-interacting complex 320
            kDa protein) (PPAR-alpha-interacting complex protein 320
            kDa)
          Length = 2885

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 241  RKPRTASMSPETPGERPLGGTYLPACSMVYSAISAASP 354
            +K RT S SPE  GER + G+   + +   S+ +AA P
Sbjct: 2742 KKERTESQSPENGGERCVPGSPSTSSTAALSSAAAAKP 2779

>RF3_NEIMA (Q9JVH7) Peptide chain release factor 3 (RF-3)|
          Length = 531

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 443 VVVNGATKEVEAEAYFANASYAEALWLRCGGEAAEIAEYTMEHAGRYVPPSG 288
           VV +    E   EA F NAS   A W+ C  +  ++AE+   +AG     +G
Sbjct: 446 VVTSRLANEYGVEAVFDNASIWSARWVSC-DDKKKLAEFEKANAGNLAIDAG 496

>RL4_STRCO (Q9L0D9) 50S ribosomal protein L4|
          Length = 219

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 190 SQEGNTASVQFAGGAVARKPRTASMSPETP 279
           +++G+T + QFAGG V   P+    S  TP
Sbjct: 74  ARQGSTRAPQFAGGGVVHGPQPRDYSQRTP 103

>RL32_METKA (Q8TW13) 50S ribosomal protein L32e|
          Length = 131

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 194 RKEIRHRFNSLAVRWRGSHGRHP*ARRRRES 286
           R++  HR+  L  +WR   GRH   RR+ +S
Sbjct: 29  RRQEWHRYKKLGEKWRRPKGRHSKMRRKLKS 59

>ALF_TRYBB (P07752) Fructose-bisphosphate aldolase, glycosomal (EC 4.1.2.13)|
          Length = 371

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 353 GEAAEIAEYTMEHAGRYVPPSGRSPGVSGLMDAVRGFLAT 234
           G A ++AEYT++   R +PP+   PGV+ L   +   +A+
Sbjct: 253 GHAEQVAEYTVKTLARVIPPA--LPGVTFLSGGLSEVMAS 290

>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 160  YDGTSYFSVHSQEG-NTASVQFAGGAVARKPRTASMSPETPGERPLGGTYLPACSMVYSA 336
            Y G   FS  S  G + +S  ++  +    P +   SP +PG  P   TY P+ S  YS 
Sbjct: 1531 YVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPS-SPGYSP 1589

Query: 337  ISAASPP 357
             S A  P
Sbjct: 1590 TSPAYSP 1596

>GLMS_AERPE (Q9YCQ6) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 616

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = +3

Query: 201 KYGIGSIRWRCGGEEATDGIHEPGDAGRAATGRDVPARVLHGVLRDLGRLAAAAQPQGLR 380
           + GIG  RW   G       H   D G    GR   A V +GV+R+   L    + +G R
Sbjct: 68  RVGIGHTRWATHGPPNDVNAHPHTDCG----GR--VAVVHNGVIRNYASLRRELEARGHR 121

Query: 381 VARVREVSLCLHL 419
           +    +  L  HL
Sbjct: 122 LVSETDTELVAHL 134

>SYS2_STRAW (Q82KS8) Seryl-tRNA synthetase 2 (EC 6.1.1.11) (Serine--tRNA ligase|
           2) (SerRS 2)
          Length = 427

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 282 RAATGRDVPARVLHGVLRDLGRLAAAAQPQGLR 380
           + A GR  PA  L+G    +GR  AA   QG+R
Sbjct: 368 KRADGRKAPAATLNGSALPIGRTVAALLEQGVR 400

>MILK2_HUMAN (Q8IY33) MICAL-like protein 2|
          Length = 904

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 280 PASPGSWMPSVASSPPHRQRI 218
           PASPG  +P+ + SPP R+R+
Sbjct: 647 PASPGPSLPARSPSPPRRRRL 667


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,712,842
Number of Sequences: 219361
Number of extensions: 1459969
Number of successful extensions: 4888
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4885
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)