Clone Name | rbart24c06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 298 gggacgtacctgcccgcgtgctccatggtgtactccgcgatctcggccgcctcgccgccg 357 ||||||||| || ||||||| |||||||| ||||| ||||||| || |||||||| ||| Sbjct: 53492 gggacgtacttggccgcgtgttccatggtatactcgccgatctcagctgcctcgccaccg 53551 Query: 358 cagcgcagccacagggcctccgcgtagctcgcgttcgcgaagtaagcctctgcctccac 416 ||||||||||||||||||||| |||||||| || ||||| || ||||| |||||||| Sbjct: 53552 cagcgcagccacagggcctccatgtagctcgtgtgtgcgaaataggcctccgcctccac 53610
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 298 gggacgtacctgcccgcgtgctccatggtgtactccgcgatctcggccgcctcgccgccg 357 ||||||||| || ||||||| |||||||| ||||| ||||||| || |||||||| ||| Sbjct: 1835662 gggacgtacttggccgcgtgttccatggtatactcgccgatctcagctgcctcgccaccg 1835721 Query: 358 cagcgcagccacagggcctccgcgtagctcgcgttcgcgaagtaagcctctgcctccac 416 ||||||||||||||||||||| |||||||| || ||||| || ||||| |||||||| Sbjct: 1835722 cagcgcagccacagggcctccatgtagctcgtgtgtgcgaaataggcctccgcctccac 1835780
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 298 gggacgtacctgcccgcgtgctccatggtgtactccgcgatctcggccgcctcgccgccg 357 ||||||||| || ||||||| |||||||| ||||| ||||||| || |||||||| ||| Sbjct: 1833383 gggacgtacttggccgcgtgttccatggtatactcgccgatctcagctgcctcgccaccg 1833442 Query: 358 cagcgcagccacagggcctccgcgtagctcgcgttcgcgaagtaagcctctgcctccac 416 ||||||||||||||||||||| |||||||| || ||||| || ||||| |||||||| Sbjct: 1833443 cagcgcagccacagggcctccatgtagctcgtgtgtgcgaaataggcctccgcctccac 1833501
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 330 ctccgcgatctcggccgcctcgccgccg 357 |||||||||||| ||||||||||||||| Sbjct: 320741 ctccgcgatctccgccgcctcgccgccg 320768
>gb|AC137524.4| Mus musculus BAC clone RP23-55M20 from chromosome 7, complete sequence Length = 253824 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 403 gcctctgcctccacctctttagt 425 ||||||||||||||||||||||| Sbjct: 252382 gcctctgcctccacctctttagt 252360
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 cggccgcctcgccgccgcagc 361 ||||||||||||||||||||| Sbjct: 15077 cggccgcctcgccgccgcagc 15097
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 cggccgcctcgccgccgcagc 361 ||||||||||||||||||||| Sbjct: 1373533 cggccgcctcgccgccgcagc 1373553
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 333 cgcgatctcggccgcctcgcc 353 ||||||||||||||||||||| Sbjct: 33118 cgcgatctcggccgcctcgcc 33138
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 cggccgcctcgccgccgcagc 361 ||||||||||||||||||||| Sbjct: 1259830 cggccgcctcgccgccgcagc 1259810 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 cggccgcctcgccgccgcagc 361 ||||||||||||||||||||| Sbjct: 1259416 cggccgcctcgccgccgcagc 1259396
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 tccgcgatctcggccgcctcg 351 ||||||||||||||||||||| Sbjct: 2812356 tccgcgatctcggccgcctcg 2812376
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 tccgcgatctcggccgcctcg 351 ||||||||||||||||||||| Sbjct: 80584 tccgcgatctcggccgcctcg 80604
>ref|XM_480711.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1079 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcggccgcctcgccgccgc 358 |||||||||||||||||||| Sbjct: 510 ctcggccgcctcgccgccgc 529
>ref|XM_475664.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1353 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcggccgcctcgccgccgc 358 |||||||||||||||||||| Sbjct: 295 ctcggccgcctcgccgccgc 314
>ref|XM_414338.1| PREDICTED: Gallus gallus similar to calcium channel, voltage dependent, alpha2/delta subunit 3 (LOC415996), mRNA Length = 5490 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 caagcagcaacttctccaaa 86 |||||||||||||||||||| Sbjct: 1684 caagcagcaacttctccaaa 1703
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcggccgcctcgccgccgc 358 |||||||||||||||||||| Sbjct: 23065 ctcggccgcctcgccgccgc 23084
>emb|AJ893357.1| Phytophthora infestans, clone PI-BAC-49P21 Length = 137298 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 ggcacatcttatttttcagt 185 |||||||||||||||||||| Sbjct: 6855 ggcacatcttatttttcagt 6874
>ref|XM_816089.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510329.50) partial mRNA Length = 2127 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ctcaagcagcaacttctcca 84 |||||||||||||||||||| Sbjct: 1678 ctcaagcagcaacttctcca 1697
>gb|AC104789.4| Homo sapiens BAC clone RP11-138B1 from 7, complete sequence Length = 142048 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gtccattcacaggaaggaaa 203 |||||||||||||||||||| Sbjct: 51562 gtccattcacaggaaggaaa 51581
>gb|AC158340.9| Mus musculus chromosome 1, clone RP24-161N8, complete sequence Length = 163123 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 73 gcaacttctccaaataaaaaggcacccacaat 104 |||||||||| |||||||||||| || ||||| Sbjct: 85761 gcaacttctcaaaataaaaaggctcctacaat 85730
>gb|AC102781.5| Mus musculus chromosome 1, clone RP23-271G2, complete sequence Length = 198393 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 73 gcaacttctccaaataaaaaggcacccacaat 104 |||||||||| |||||||||||| || ||||| Sbjct: 163788 gcaacttctcaaaataaaaaggctcctacaat 163819
>emb|AL096866.10|HSJ247G22 Human DNA sequence from clone RP1-247G22 on chromosome 6p12.2-21.2, complete sequence Length = 120487 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 agtaagcctctgcctccacc 417 |||||||||||||||||||| Sbjct: 35363 agtaagcctctgcctccacc 35382
>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete sequence Length = 151991 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 ccgcctcgccgccgcagcgc 363 |||||||||||||||||||| Sbjct: 61080 ccgcctcgccgccgcagcgc 61099
>gb|AE011882.1| Xanthomonas axonopodis pv. citri str. 306, section 260 of 469 of the complete genome Length = 11091 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tcgctggcggtgcggtggcg 240 |||||||||||||||||||| Sbjct: 8848 tcgctggcggtgcggtggcg 8829
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 cattcacaggaaggaaatac 206 |||||||||||||||||||| Sbjct: 1243232 cattcacaggaaggaaatac 1243251
>gb|AC010303.7| Homo sapiens chromosome 5 clone CTB-37A13, complete sequence Length = 86533 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gcctctgcctccacctcttt 422 |||||||||||||||||||| Sbjct: 23495 gcctctgcctccacctcttt 23514
>gb|AF486646.1| Azotobacter vinelandii unknown gene Length = 2670 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ttcgctggcggtgcggtggc 239 |||||||||||||||||||| Sbjct: 1932 ttcgctggcggtgcggtggc 1913 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ttcgctggcggtgcggtggc 239 |||||||||||||||||||| Sbjct: 1479 ttcgctggcggtgcggtggc 1460
>gb|AC008449.6| Homo sapiens chromosome 5 clone CTC-341A9, complete sequence Length = 124405 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gcctctgcctccacctcttt 422 |||||||||||||||||||| Sbjct: 97402 gcctctgcctccacctcttt 97421
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cggagacgccgggagagcgg 288 |||||||||||||||||||| Sbjct: 184665 cggagacgccgggagagcgg 184646
>gb|BC103359.1| Bos taurus F-box protein 15, mRNA (cDNA clone MGC:127484 IMAGE:7949121), complete cds Length = 1715 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gcgtgctccatggtgtactc 332 |||||||||||||||||||| Sbjct: 664 gcgtgctccatggtgtactc 645
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ccgcctcgccgccgcagcgc 363 |||||||||||||||||||| Sbjct: 19017584 ccgcctcgccgccgcagcgc 19017565
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ctcggccgcctcgccgccgc 358 |||||||||||||||||||| Sbjct: 7159698 ctcggccgcctcgccgccgc 7159679
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcggccgcctcgccgccgc 358 |||||||||||||||||||| Sbjct: 24954212 ctcggccgcctcgccgccgc 24954231
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcggccgcctcgccgccgc 358 |||||||||||||||||||| Sbjct: 4762341 ctcggccgcctcgccgccgc 4762360
>dbj|AP005870.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1049E04 Length = 159216 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ctcggccgcctcgccgccgc 358 |||||||||||||||||||| Sbjct: 28957 ctcggccgcctcgccgccgc 28938
>ref|NM_211451.1| Eremothecium gossypii AGL278Cp (AGL278C), mRNA Length = 693 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cggagacgccgggagagcgg 288 |||||||||||||||||||| Sbjct: 92 cggagacgccgggagagcgg 111
>dbj|AK069940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038L08, full insert sequence Length = 1079 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcggccgcctcgccgccgc 358 |||||||||||||||||||| Sbjct: 510 ctcggccgcctcgccgccgc 529
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ctcgccgccgcagcgcagcc 367 |||||||||||||||||||| Sbjct: 2757715 ctcgccgccgcagcgcagcc 2757734
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ccgcctcgccgccgcagcgc 363 |||||||||||||||||||| Sbjct: 19028838 ccgcctcgccgccgcagcgc 19028819
>ref|NM_001035021.1| Bos taurus F-box protein 15 (FBXO15), mRNA Length = 1715 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gcgtgctccatggtgtactc 332 |||||||||||||||||||| Sbjct: 664 gcgtgctccatggtgtactc 645 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,170,828 Number of Sequences: 3902068 Number of extensions: 4170828 Number of successful extensions: 73190 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72200 Number of HSP's gapped (non-prelim): 990 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)