ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart24c05 |
|---|---|
| Clone Library Name | barley_pub |
>GAO1D_WHEAT (O04705) Gibberellin 20 oxidase 1-D (EC 1.14.11.-) (Gibberellin| C-20 oxidase 1-D) (GA 20-oxidase 1-D) (Ta20ox1D) (TaGA20ox1-D) (Protein Wga20) Length = 361 Score = 145 bits (365), Expect = 6e-35 Identities = 70/74 (94%), Positives = 71/74 (95%), Gaps = 1/74 (1%) Frame = -1 Query: 458 VPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFS 279 VPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFS Sbjct: 288 VPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFS 347 Query: 278 SWVV-QQQPASART 240 SW+V QQQP ART Sbjct: 348 SWIVQQQQPQPART 361
>GAO1B_WHEAT (O04706) Gibberellin 20 oxidase 1-B (EC 1.14.11.-) (Gibberellin| C-20 oxidase 1-B) (GA 20-oxidase 1-B) (Ta20ox1B) (TaGA20ox1-B) Length = 365 Score = 142 bits (358), Expect = 4e-34 Identities = 66/67 (98%), Positives = 67/67 (100%) Frame = -1 Query: 458 VPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFS 279 VPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFS Sbjct: 288 VPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFS 347 Query: 278 SWVVQQQ 258 SW+VQQQ Sbjct: 348 SWIVQQQ 354
>GAO1A_WHEAT (O04707) Gibberellin 20 oxidase 1-A (EC 1.14.11.-) (Gibberellin| C-20 oxidase 1-B) (GA 20-oxidase 1-A) (Ta20ox1A) (TaGA20ox1-A) Length = 365 Score = 141 bits (355), Expect = 9e-34 Identities = 65/67 (97%), Positives = 67/67 (100%) Frame = -1 Query: 458 VPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFS 279 VPRKSLAFFLCPEMDKVVAPPGTLVDA+NPRAYPDFTWRSLLDFTQKHYRADMKTLEVFS Sbjct: 288 VPRKSLAFFLCPEMDKVVAPPGTLVDASNPRAYPDFTWRSLLDFTQKHYRADMKTLEVFS 347 Query: 278 SWVVQQQ 258 SW+VQQQ Sbjct: 348 SWIVQQQ 354
>GAOX1_ORYSA (P93771) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20| oxidase 1) (GA 20-oxidase 1) (Os20ox) Length = 372 Score = 102 bits (254), Expect = 5e-22 Identities = 44/62 (70%), Positives = 51/62 (82%) Frame = -1 Query: 455 PRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSS 276 PR+SLAFFLCPEMD VV PP LVD +PR YPDFTWR+LLDFTQ+HYRADM+ + FS Sbjct: 299 PRRSLAFFLCPEMDTVVRPPEELVDDHHPRVYPDFTWRALLDFTQRHYRADMRLFQAFSD 358 Query: 275 WV 270 W+ Sbjct: 359 WL 360
>GAOX1_ARATH (Q39110) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20| oxidase 1) (GA 20-oxidase 1) (AtGA20ox) Length = 377 Score = 93.6 bits (231), Expect = 2e-19 Identities = 40/63 (63%), Positives = 48/63 (76%) Frame = -1 Query: 452 RKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSW 273 RKSLAFFLCP+ D+VV PP L+D+ R YPDFTW L+FTQKHYRADM TL+ FS W Sbjct: 313 RKSLAFFLCPKKDRVVTPPRELLDSITSRRYPDFTWSMFLEFTQKHYRADMNTLQAFSDW 372 Query: 272 VVQ 264 + + Sbjct: 373 LTK 375
>GAOX2_ARATH (Q39111) Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin C-20| oxidase 2) (GA 20-oxidase 2) Length = 378 Score = 91.3 bits (225), Expect = 1e-18 Identities = 38/62 (61%), Positives = 48/62 (77%) Frame = -1 Query: 452 RKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSW 273 RKS+AFFLCP+ DKVV PP +++ R YPDFTW L+FTQKHYRAD+ TL+ FS+W Sbjct: 311 RKSMAFFLCPKKDKVVKPPSDILEKMKTRKYPDFTWSMFLEFTQKHYRADVNTLDSFSNW 370 Query: 272 VV 267 V+ Sbjct: 371 VI 372
>GAOX2_ORYSA (Q8RVF5) Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin C-20| oxidase 2) (GA 20-oxidase 2) (Os20ox2) (Semidwarf-1 protein) Length = 389 Score = 82.8 bits (203), Expect = 4e-16 Identities = 38/71 (53%), Positives = 49/71 (69%) Frame = -1 Query: 452 RKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSW 273 R+SLAFFLCP D+VV PP + AA P+ YPDFTW L+ FTQ+HYRAD +TL+ F+ W Sbjct: 315 RRSLAFFLCPREDRVVRPPPS---AATPQHYPDFTWADLMRFTQRHYRADTRTLDAFTRW 371 Query: 272 VVQQQPASART 240 + +A T Sbjct: 372 LAPPAADAAAT 382
>GAOX3_ARATH (Q39112) Gibberellin 20 oxidase 3 (EC 1.14.11.-) (Gibberellin C-20| oxidase 3) (GA 20-oxidase 3) Length = 380 Score = 82.0 bits (201), Expect = 7e-16 Identities = 38/63 (60%), Positives = 46/63 (73%), Gaps = 2/63 (3%) Frame = -1 Query: 452 RKSLAFFLCPEMDKVVAPPGTLVDA--ANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFS 279 RK+ AFFLCP+ +KVV PP LV+ + R YPDFTW L+FTQKHYRADM TL+ FS Sbjct: 312 RKTFAFFLCPKGEKVVKPPEELVNGVKSGERKYPDFTWSMFLEFTQKHYRADMNTLDEFS 371 Query: 278 SWV 270 W+ Sbjct: 372 IWL 374
>G3OX2_ARATH (Q9ZT84) Gibberellin 3-beta-dioxygenase 2 (EC 1.14.11.15)| (Gibberellin 3 beta-hydroxylase 2) (GA 3-oxidase 2) (AtGA3ox2) Length = 347 Score = 32.7 bits (73), Expect = 0.45 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = -1 Query: 452 RKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTL 291 R S+A+ P D +++P LVD YP TW+ L H+ + + Sbjct: 292 RFSMAYLWGPPSDIMISPLPKLVDPLQSPLYPSLTWKQYLATKATHFNQSLSII 345
>G2OX1_ARATH (Q8LEA2) Gibberellin 2-beta-dioxygenase 1 (EC 1.14.11.13)| (Gibberellin 2-beta-hydroxylase 1) (Gibberellin 2-oxidase 1) (GA 2-oxidase 1) Length = 329 Score = 32.3 bits (72), Expect = 0.59 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -1 Query: 452 RKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRAD 303 R S+ +F P + + +AP L+D + R Y +FTW + T +D Sbjct: 264 RVSMIYFAGPSLTQRIAPLTCLIDNEDERLYEEFTWSEYKNSTYNSRLSD 313
>ATR_XENLA (Q9DE14) Serine/threonine-protein kinase atr (EC 2.7.11.1) (Ataxia| telangiectasia and Rad3-related protein) (Xatr) Length = 2654 Score = 29.6 bits (65), Expect = 3.8 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = +3 Query: 132 VVNQLSGK*QQRSSWTVDFSLPALQHQWRANAWD 233 V+ Q++G RS WT + + ++ W+ + WD Sbjct: 1766 VITQVNGILNSRSEWTAELNTYRVEAAWKLSQWD 1799
>SYD_CAMJR (Q5HVD1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 583 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -1 Query: 386 VDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSWVVQQQPASART*WIP 228 +D NP+ Y +F RS ++ A+M LEV + + + P AR +P Sbjct: 129 LDLRNPKLYENFALRSKACIAARNSLANMGFLEVETPILTKATPEGARDYLVP 181
>SYD_CAMJE (Q9PHM7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 583 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -1 Query: 386 VDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSWVVQQQPASART*WIP 228 +D NP+ Y +F RS ++ A+M LEV + + + P AR +P Sbjct: 129 LDLRNPKLYENFALRSKACIAARNSLANMGFLEVETPILTKATPEGARDYLVP 181
>ATR_MOUSE (Q9JKK8) Serine/threonine-protein kinase ATR (EC 2.7.11.1) (Ataxia| telangiectasia and Rad3-related protein) Length = 2635 Score = 28.5 bits (62), Expect = 8.6 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = +3 Query: 132 VVNQLSGK*QQRSSWTVDFSLPALQHQWRANAWD 233 V+ Q++G RS WT + + ++ W+ + WD Sbjct: 1746 VITQVNGVHANRSEWTDELNTYRVEAAWKLSQWD 1779
>ATR_HUMAN (Q13535) Serine/threonine-protein kinase ATR (EC 2.7.11.1) (Ataxia| telangiectasia and Rad3-related protein) (FRAP-related protein 1) Length = 2644 Score = 28.5 bits (62), Expect = 8.6 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = +3 Query: 132 VVNQLSGK*QQRSSWTVDFSLPALQHQWRANAWD 233 V+ Q++G RS WT + + ++ W+ + WD Sbjct: 1752 VITQVNGVHANRSEWTDELNTYRVEAAWKLSQWD 1785 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,477,073 Number of Sequences: 219361 Number of extensions: 825121 Number of successful extensions: 2398 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2367 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2396 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
