ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase I... 30 3.8
2AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 1... 29 6.4

>AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)|
            (ATPase class I type 11C) (ATPase IG) (ATPase IQ) (ATPase
            class VI type 11C)
          Length = 1132

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 81   YFFFLRIPRYITTWVYVLLCLFVSLF 4
            YF F ++   ++TW+ ++L +F+SLF
Sbjct: 1057 YFVFAQMLSSVSTWLAIILLIFISLF 1082



to top

>AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 11C (EC 3.6.3.1)|
           (Fragment)
          Length = 347

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 81  YFFFLRIPRYITTWVYVLLCLFVSLF 4
           YF F ++   ++TW+ ++L +F+SLF
Sbjct: 285 YFVFAQMLCSVSTWLAIILLIFISLF 310


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,632,461
Number of Sequences: 219361
Number of extensions: 731044
Number of successful extensions: 2690
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2627
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top