ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
2gb|AC027123.7| Homo sapiens chromosome 3 clone RP11-392M7 map 3p... 44 0.44
3dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
4emb|AM261476.1| Glycine max mRNA for PDR-like ABC-transporter (p... 44 0.44
5gb|AC034192.5| Homo sapiens chromosome 3 clone RP11-416N8 map 3p... 44 0.44
6ref|NM_177690.2| Mus musculus NACHT, leucine rich repeat and PYD... 42 1.7
7gb|AC163025.3| Mus musculus chromosome 1, clone RP23-80N7, compl... 42 1.7
8gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosom... 42 1.7
9gb|AC091789.5| Homo sapiens BAC clone RP11-496L12 from 7, comple... 42 1.7
10gb|AC155171.7| Mus musculus BAC clone RP23-100A10 from chromosom... 42 1.7
11gb|AC142321.1| Pan troglodytes BAC clone RP43-63G10 from 7, comp... 42 1.7
12gb|AY360473.1| Mus musculus NALP2 mRNA, complete cds 42 1.7
13gb|AC144716.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
14gb|AC119151.1| Homo sapiens chromosome 5 clone CTD-2582L22, comp... 42 1.7
15gb|AC127352.5| Mus musculus BAC clone RP23-81P4 from chromosome ... 42 1.7
16gb|DQ066881.1| Mus musculus NACHT (Nalp2) mRNA, complete cds 42 1.7
17dbj|AK054264.1| Mus musculus 2 days pregnant adult female ovary ... 42 1.7
18emb|BX469900.4| Zebrafish DNA sequence from clone CH211-280H1 in... 42 1.7
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
21dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
22emb|AL805945.5| Zebrafish DNA sequence from clone CH211-195M7, c... 42 1.7
23gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
24emb|AL671269.11| Mouse DNA sequence from clone RP23-143P22 on ch... 42 1.7
25gb|DQ215033.1| Taeniopygia guttata clone 0058P0001H05 split hand... 40 6.8
26ref|XM_464576.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.8
27ref|XM_461219.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 6.8
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.8
29gb|AC133607.3| Mus musculus BAC clone RP23-153N7 from chromosome... 40 6.8
30emb|Z81120.1|CET12D8 Caenorhabditis elegans Cosmid T12D8, comple... 40 6.8
31emb|BX842700.35| Zebrafish DNA sequence from clone DKEY-2P18 in ... 40 6.8
32emb|Z50027.1|CEC39B10 Caenorhabditis elegans Cosmid C39B10, comp... 40 6.8
33gb|AC127234.3| Mus musculus BAC clone RP24-566K14 from chromosom... 40 6.8
34gb|AF499102.1| Spawner-isolated mortality virus genomic sequence 40 6.8
35ref|XM_720019.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 6.8
36ref|XM_673993.1| Plasmodium berghei strain ANKA hypothetical pro... 40 6.8
37ref|XM_662058.1| Cryptosporidium hominis TU502 ABC multidrug or ... 40 6.8
38emb|AL645488.6| Human DNA sequence from clone RP11-33J1 on chrom... 40 6.8
39emb|AL591024.14| Human DNA sequence from clone RP11-153M24 on ch... 40 6.8
40emb|AL162587.20| Human DNA sequence from clone RP11-280I16 on ch... 40 6.8
41emb|AL162430.15| Human DNA sequence from clone RP11-296A18 on ch... 40 6.8
42emb|AL132795.12|HSDJ412I7 Human DNA sequence from clone RP3-412I... 40 6.8
43emb|Z36145.1|SCYBR276C S.cerevisiae chromosome II reading frame ... 40 6.8
44emb|X76053.1|SCDPB3 S.cerevisiae (s288c) RIF1, DPB3, YmL27 and S... 40 6.8
45emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 6.8
46emb|BX511081.8| Zebrafish DNA sequence from clone DKEY-6B12 in l... 40 6.8
47emb|CR860008.1| Pongo pygmaeus mRNA; cDNA DKFZp459B0825 (from cl... 40 6.8
48gb|AF294304.1| Anolis conspersus NADH dehydrogenase subunit 2 (N... 40 6.8
49ref|XM_625734.1| Cryptosporidium parvum Iowa II putative ABC tra... 40 6.8
50gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genom... 40 6.8
51dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
52gb|AC005966.2|T2K10 Arabidopsis thaliana chromosome 1 BAC T2K10 ... 40 6.8
53gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complet... 40 6.8
54gb|AC097721.3| Homo sapiens BAC clone RP11-36O6 from 2, complete... 40 6.8
55dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
56dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
57emb|AL358913.4|CNS05TEE Human chromosome 14 DNA sequence BAC R-5... 40 6.8
58emb|AJ535048.1|OSA535048 Oryza sativa (japonica cultivar-group) ... 40 6.8
59gb|U63926.1|FRU63926 Fugu rubripes platelet-derived growth facto... 40 6.8
60emb|AL929326.9| Zebrafish DNA sequence from clone BUSM1-SL11 in ... 40 6.8
61dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 6.8 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 169      ttacacatgagccagaatttctttatgctcttcaaagt 206
                ||||||||||||||  || |||||||| ||||||||||
Sbjct: 27844967 ttacacatgagccaatatctctttatggtcttcaaagt 27844930
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>gb|AC027123.7| Homo sapiens chromosome 3 clone RP11-392M7 map 3p, complete sequence
          Length = 191566

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 332    tttaaccttttttctatatcagaaaa 357
              |||||||||||||||| |||||||||
Sbjct: 186925 tttaaccttttttctacatcagaaaa 186950
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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1150_A11
          Length = 142010

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 169   ttacacatgagccagaatttctttatgctcttcaaagt 206
             ||||||||||||||  || |||||||| ||||||||||
Sbjct: 53045 ttacacatgagccaatatctctttatggtcttcaaagt 53008
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>emb|AM261476.1| Glycine max mRNA for PDR-like ABC-transporter (pdr12 gene),
           cultivar williams 82
          Length = 4770

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 230 gttgttttcccagaacctggagggcc 255
           |||||||||||||||| |||||||||
Sbjct: 684 gttgttttcccagaacttggagggcc 659
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>gb|AC034192.5| Homo sapiens chromosome 3 clone RP11-416N8 map 3p, complete sequence
          Length = 176223

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 332    tttaaccttttttctatatcagaaaa 357
              |||||||||||||||| |||||||||
Sbjct: 168958 tttaaccttttttctacatcagaaaa 168933
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>ref|NM_177690.2| Mus musculus NACHT, leucine rich repeat and PYD containing 2
           (Nalp2), mRNA
          Length = 3400

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 233 gttttcccagaacctggagggccat 257
           ||||||||||| |||||||||||||
Sbjct: 653 gttttcccagagcctggagggccat 629
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>gb|AC163025.3| Mus musculus chromosome 1, clone RP23-80N7, complete sequence
          Length = 174774

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    gtaaaataagaaaaggaaggt 37
             |||||||||||||||||||||
Sbjct: 81834 gtaaaataagaaaaggaaggt 81854
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>gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosome 7, complete sequence
          Length = 192433

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 233    gttttcccagaacctggagggccat 257
              ||||||||||| |||||||||||||
Sbjct: 153860 gttttcccagagcctggagggccat 153836
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>gb|AC091789.5| Homo sapiens BAC clone RP11-496L12 from 7, complete sequence
          Length = 132126

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     aaatatgagtaaaataagaaa 29
             |||||||||||||||||||||
Sbjct: 39219 aaatatgagtaaaataagaaa 39199
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>gb|AC155171.7| Mus musculus BAC clone RP23-100A10 from chromosome 7, complete sequence
          Length = 193027

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 233    gttttcccagaacctggagggccat 257
              ||||||||||| |||||||||||||
Sbjct: 145405 gttttcccagagcctggagggccat 145429
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>gb|AC142321.1| Pan troglodytes BAC clone RP43-63G10 from 7, complete sequence
          Length = 157283

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     aaatatgagtaaaataagaaa 29
             |||||||||||||||||||||
Sbjct: 26207 aaatatgagtaaaataagaaa 26187
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>gb|AY360473.1| Mus musculus NALP2 mRNA, complete cds
          Length = 3400

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 233 gttttcccagaacctggagggccat 257
           ||||||||||| |||||||||||||
Sbjct: 653 gttttcccagagcctggagggccat 629
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>gb|AC144716.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0108D09, complete sequence
          Length = 127371

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    aaaataagaaaaggaaggtca 39
             |||||||||||||||||||||
Sbjct: 72055 aaaataagaaaaggaaggtca 72075
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>gb|AC119151.1| Homo sapiens chromosome 5 clone CTD-2582L22, complete sequence
          Length = 176204

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 329    acatttaaccttttttctata 349
              |||||||||||||||||||||
Sbjct: 127887 acatttaaccttttttctata 127867
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>gb|AC127352.5| Mus musculus BAC clone RP23-81P4 from chromosome 7, complete sequence
          Length = 196031

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 233    gttttcccagaacctggagggccat 257
              ||||||||||| |||||||||||||
Sbjct: 105382 gttttcccagagcctggagggccat 105406
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>gb|DQ066881.1| Mus musculus NACHT (Nalp2) mRNA, complete cds
          Length = 3353

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 233 gttttcccagaacctggagggccat 257
           ||||||||||| |||||||||||||
Sbjct: 653 gttttcccagagcctggagggccat 629
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>dbj|AK054264.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330007A02
           product:Weakly similar to PAN1, full insert sequence
          Length = 3400

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 233 gttttcccagaacctggagggccat 257
           ||||||||||| |||||||||||||
Sbjct: 653 gttttcccagagcctggagggccat 629
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>emb|BX469900.4| Zebrafish DNA sequence from clone CH211-280H1 in linkage group 17,
            complete sequence
          Length = 84299

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 334  taaccttttttctatatcagaaaat 358
            |||||||||||||| ||||||||||
Sbjct: 8699 taaccttttttctaaatcagaaaat 8723
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 19       aaaataagaaaaggaaggtca 39
                |||||||||||||||||||||
Sbjct: 23607430 aaaataagaaaaggaaggtca 23607410
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 457      cttctgaagagcctgttcaaa 477
                |||||||||||||||||||||
Sbjct: 23686037 cttctgaagagcctgttcaaa 23686017



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 233     gttttcccagaacctggagggcca 256
               |||||||||||||| |||||||||
Sbjct: 6069245 gttttcccagaaccaggagggcca 6069222
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>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1669_F01
          Length = 140019

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 457    cttctgaagagcctgttcaaa 477
              |||||||||||||||||||||
Sbjct: 127137 cttctgaagagcctgttcaaa 127117
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>emb|AL805945.5| Zebrafish DNA sequence from clone CH211-195M7, complete sequence
          Length = 212604

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 334    taaccttttttctatatcagaaaat 358
              |||||||||||||| ||||||||||
Sbjct: 160199 taaccttttttctaaatcagaaaat 160175
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 19       aaaataagaaaaggaaggtca 39
                |||||||||||||||||||||
Sbjct: 23917366 aaaataagaaaaggaaggtca 23917346
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>emb|AL671269.11| Mouse DNA sequence from clone RP23-143P22 on chromosome 4, complete
             sequence
          Length = 183416

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 442   cttattcaactctaacttctg 462
             |||||||||||||||||||||
Sbjct: 56045 cttattcaactctaacttctg 56025
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>gb|DQ215033.1| Taeniopygia guttata clone 0058P0001H05 split hand/foot deleted gene
           1 variant 3-like mRNA, complete sequence
          Length = 831

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 ttcaaagtgtcttgcaacag 218
           ||||||||||||||||||||
Sbjct: 753 ttcaaagtgtcttgcaacag 772
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>ref|XM_464576.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4335

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 233 gttttcccagaacctggagggcca 256
           |||||||||||||| |||||||||
Sbjct: 581 gttttcccagaaccaggagggcca 558
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>ref|XM_461219.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F21362g)
           partial mRNA
          Length = 1101

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 231 ttgttttcccagaacctggagggccata 258
           ||||||||||| |||||||||| |||||
Sbjct: 445 ttgttttcccacaacctggaggaccata 418
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 391      tctgtaaaagaatatctttt 410
                ||||||||||||||||||||
Sbjct: 21094376 tctgtaaaagaatatctttt 21094395
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>gb|AC133607.3| Mus musculus BAC clone RP23-153N7 from chromosome 18, complete sequence
          Length = 223708

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    ttaaagaagaaagacctctg 394
              ||||||||||||||||||||
Sbjct: 209326 ttaaagaagaaagacctctg 209345
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>emb|Z81120.1|CET12D8 Caenorhabditis elegans Cosmid T12D8, complete sequence
          Length = 37353

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     cttgaaaaatatgagtaaaa 22
             ||||||||||||||||||||
Sbjct: 20252 cttgaaaaatatgagtaaaa 20271
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>emb|BX842700.35| Zebrafish DNA sequence from clone DKEY-2P18 in linkage group 4,
             complete sequence
          Length = 198258

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   acatttaaccttttttctat 348
             ||||||||||||||||||||
Sbjct: 16337 acatttaaccttttttctat 16356
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>emb|Z50027.1|CEC39B10 Caenorhabditis elegans Cosmid C39B10, complete sequence
          Length = 38000

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 339  ttttttctatatcagaaaat 358
            ||||||||||||||||||||
Sbjct: 8459 ttttttctatatcagaaaat 8440
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>gb|AC127234.3| Mus musculus BAC clone RP24-566K14 from chromosome 18, complete
             sequence
          Length = 181515

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   ttaaagaagaaagacctctg 394
             ||||||||||||||||||||
Sbjct: 43424 ttaaagaagaaagacctctg 43443
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>gb|AF499102.1| Spawner-isolated mortality virus genomic sequence
          Length = 1886

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 340  tttttctatatcagaaaatt 359
            ||||||||||||||||||||
Sbjct: 1216 tttttctatatcagaaaatt 1197
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>ref|XM_720019.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04768)
           partial mRNA
          Length = 993

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 tttttctatatcagaaaatt 359
           ||||||||||||||||||||
Sbjct: 240 tttttctatatcagaaaatt 259
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>ref|XM_673993.1| Plasmodium berghei strain ANKA hypothetical protein (PB001363.02.0)
           partial mRNA
          Length = 990

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 tttttctatatcagaaaatt 359
           ||||||||||||||||||||
Sbjct: 237 tttttctatatcagaaaatt 256
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>ref|XM_662058.1| Cryptosporidium hominis TU502 ABC multidrug or ion efflux transporter
            (Chro.40157) partial mRNA
          Length = 4410

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 225  ataaggttgttttcccagaacctg 248
            ||||||||||||| ||||||||||
Sbjct: 3598 ataaggttgtttttccagaacctg 3575
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>emb|AL645488.6| Human DNA sequence from clone RP11-33J1 on chromosome 1 Contains a CpG
             island, complete sequence
          Length = 105641

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 306   ttagagatgctgaagacaaaaggacatt 333
             ||||||||||  ||||||||||||||||
Sbjct: 75234 ttagagatgcccaagacaaaaggacatt 75207
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>emb|AL591024.14| Human DNA sequence from clone RP11-153M24 on chromosome 13 Contains a
             novel gene similar to ATP synthase (H+ transporting,
             mitochondrial F1 complex, the CDX2 gene for caudal type
             homeo box transcription factor 2, the 3' end of the FLT3
             gene for fms-related tyrosine kinase 3 and CpG islands,
             complete sequence
          Length = 76721

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    aaggtcacttttatgatgtt 52
             ||||||||||||||||||||
Sbjct: 65063 aaggtcacttttatgatgtt 65044
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>emb|AL162587.20| Human DNA sequence from clone RP11-280I16 on chromosome 9 Contains the 5'
              end of the SLC1A1 gene for solute carrier family 1
              (neuronal/epithelial high affinity glutamate transporter
              system Xag) member 1 (EAAC1 EAAT3), the 3' end of a novel
              gene (FLJ10058) and a CpG island, complete sequence
          Length = 143428

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tctttatgctcttcaaagtg 207
              ||||||||||||||||||||
Sbjct: 104182 tctttatgctcttcaaagtg 104201
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>emb|AL162430.15| Human DNA sequence from clone RP11-296A18 on chromosome 1 Contains for
             novel genes, a cofilin 1 (non-muscle) (CFL1) pseudogene,
             the RNF11 gene for ring finger protein 11, a ribosomal
             protein S2 (RPS2) pseudogene and the 3' end of the C1orf34
             gene for chromosome 1 open reading frame 34, complete
             sequence
          Length = 211791

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   ataattttagagatgctgaa 319
             ||||||||||||||||||||
Sbjct: 49966 ataattttagagatgctgaa 49985
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>emb|AL132795.12|HSDJ412I7 Human DNA sequence from clone RP3-412I7 on chromosome 6q22.1-22.33
             Contains a gene similar to murine radial spokehead-like 1,
             a novel gene, the KPNA5 gene for karyopherin alpha 5
             (importin alpha 6) and a CpG island, complete sequence
          Length = 135417

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   tgagccagaatttctttatg 195
             ||||||||||||||||||||
Sbjct: 61573 tgagccagaatttctttatg 61554
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>emb|Z36145.1|SCYBR276C S.cerevisiae chromosome II reading frame ORF YBR276c
          Length = 5175

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 442  cttattcaactctaacttct 461
            ||||||||||||||||||||
Sbjct: 4033 cttattcaactctaacttct 4052
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>emb|X76053.1|SCDPB3 S.cerevisiae (s288c) RIF1, DPB3, YmL27 and SNF5 genes
          Length = 32421

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 442  cttattcaactctaacttct 461
            ||||||||||||||||||||
Sbjct: 5259 cttattcaactctaacttct 5278
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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 231     ttgttttcccagaacctggagggccata 258
               ||||||||||| |||||||||| |||||
Sbjct: 1706544 ttgttttcccacaacctggaggaccata 1706517
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>emb|BX511081.8| Zebrafish DNA sequence from clone DKEY-6B12 in linkage group 21, complete
              sequence
          Length = 210246

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 316    tgaagacaaaaggacattta 335
              ||||||||||||||||||||
Sbjct: 190787 tgaagacaaaaggacattta 190768
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>emb|CR860008.1| Pongo pygmaeus mRNA; cDNA DKFZp459B0825 (from clone DKFZp459B0825)
          Length = 3769

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   ttttatgatgttttacaact 60
            ||||||||||||||||||||
Sbjct: 2712 ttttatgatgttttacaact 2731
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>gb|AF294304.1| Anolis conspersus NADH dehydrogenase subunit 2 (ND2) gene, complete
           cds; mitochondrial gene for mitochondrial product
          Length = 1430

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 289 tattctactcaataatttta 308
           ||||||||||||||||||||
Sbjct: 644 tattctactcaataatttta 663
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>ref|XM_625734.1| Cryptosporidium parvum Iowa II putative ABC transporter with two AAA
            domains and 14 transmembrane regions (cgd4_1380), partial
            mRNA
          Length = 4440

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 225  ataaggttgttttcccagaacctg 248
            ||||||||||||| ||||||||||
Sbjct: 3628 ataaggttgtttttccagaacctg 3605
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>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete
             sequence
          Length = 131250

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   tctgtaaaagaatatctttt 410
             ||||||||||||||||||||
Sbjct: 72132 tctgtaaaagaatatctttt 72151
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 391      tctgtaaaagaatatctttt 410
                ||||||||||||||||||||
Sbjct: 21087405 tctgtaaaagaatatctttt 21087424
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>gb|AC005966.2|T2K10 Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence
          Length = 90284

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    ggtcacttttatgatgtttt 54
             ||||||||||||||||||||
Sbjct: 24451 ggtcacttttatgatgtttt 24470
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>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 123  tcaaaaacagaatcaaccaagtag 146
            |||||||||||||||| |||||||
Sbjct: 1115 tcaaaaacagaatcaaacaagtag 1138
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>gb|AC097721.3| Homo sapiens BAC clone RP11-36O6 from 2, complete sequence
          Length = 144493

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 123    tcaaaaacagaatcaaccaagtag 146
              |||||||||||||||| |||||||
Sbjct: 143608 tcaaaaacagaatcaaacaagtag 143631
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>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1006_A02
          Length = 175153

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 233   gttttcccagaacctggagggcca 256
             |||||||||||||| |||||||||
Sbjct: 34727 gttttcccagaaccaggagggcca 34704
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>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F05
          Length = 147472

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 233   gttttcccagaacctggagggcca 256
             |||||||||||||| |||||||||
Sbjct: 90084 gttttcccagaaccaggagggcca 90061
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>emb|AL358913.4|CNS05TEE Human chromosome 14 DNA sequence BAC R-557C9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 179862

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 123    tcaaaaacagaatcaaccaagtag 146
              |||||||||||||||| |||||||
Sbjct: 154167 tcaaaaacagaatcaaacaagtag 154144
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>emb|AJ535048.1|OSA535048 Oryza sativa (japonica cultivar-group) pdr7 gene for PDR-like ABC
           transporter, exons 1-23
          Length = 6409

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 233 gttttcccagaacctggagggcca 256
           |||||||||||||| |||||||||
Sbjct: 986 gttttcccagaaccaggagggcca 963
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>gb|U63926.1|FRU63926 Fugu rubripes platelet-derived growth factor receptor beta
            (PDGFRbeta) and macrophage colony-stimulating factor
            receptor (CSF1R) genes, complete cds
          Length = 23196

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 316  tgaagacaaaaggacattta 335
            ||||||||||||||||||||
Sbjct: 3341 tgaagacaaaaggacattta 3322
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>emb|AL929326.9| Zebrafish DNA sequence from clone BUSM1-SL11 in linkage group 20,
             complete sequence
          Length = 137700

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   acatttaaccttttttctat 348
             ||||||||||||||||||||
Sbjct: 69642 acatttaaccttttttctat 69623
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>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060,
             complete sequence
          Length = 123078

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     tgaaaaatatgagtaaaata 24
             ||||||||||||||||||||
Sbjct: 44749 tgaaaaatatgagtaaaata 44730


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,506,976
Number of Sequences: 3902068
Number of extensions: 6506976
Number of successful extensions: 135547
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135138
Number of HSP's gapped (non-prelim): 409
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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