ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188605.1| Oryza sativa (japonica cultivar-group), Ozsa820... 210 3e-51
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
3dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
4gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
6dbj|AK101642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
7dbj|AK064229.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
8dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 46 0.093
9gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.37
10gb|BC095614.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S ... 44 0.37
11ref|NM_001020633.1| Danio rerio NADH dehydrogenase (ubiquinone) ... 44 0.37
12emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.37
13gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 44 0.37
14emb|CR753876.17| Zebrafish DNA sequence from clone DKEYP-116A7 i... 44 0.37
15gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 42 1.5
16gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 42 1.5
17gb|AF328738.1|AF328738 Agelaius phoeniceus cosmid Rwcos3, partia... 42 1.5
18dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.5
19ref|XM_469921.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
20gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 5.8
21gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome... 40 5.8
22gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.8
23gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 5.8
24gb|AY224542.1| Oryza sativa (japonica cultivar-group) isolate 23... 40 5.8
25ref|XM_534485.2| PREDICTED: Canis familiaris similar to thrombos... 40 5.8
26gb|AC134384.6| Mus musculus strain C57BL/6J clone rp23-393d21, c... 40 5.8
27gb|AC134383.11| Mus musculus strain C57BL/6J clone rp23-348k4, c... 40 5.8
28emb|BX063779.1|CNS09LDJ Single read from an extremity of a full-... 40 5.8
29gb|AC163199.8| Mus musculus 6 BAC RP23-333F8 (Roswell Park Cance... 40 5.8
30gb|AC008019.60| Mus musculus strain 129S6/SvEvTac chromosome 16 ... 40 5.8
31dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 5.8
32gb|AE012007.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.8
33gb|AE012392.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.8
34dbj|AK147751.1| Mus musculus melanocyte cDNA, RIKEN full-length ... 40 5.8
35gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.8
36dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
37gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, co... 40 5.8
38gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 geno... 40 5.8
39dbj|AK071787.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
40emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.8
41gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 5.8 
>ref|NM_188605.1| Oryza sativa (japonica cultivar-group), Ozsa8208 predicted mRNA
          Length = 996

 Score =  210 bits (106), Expect = 3e-51
 Identities = 253/302 (83%)
 Strand = Plus / Minus

                                                                       
Query: 128 cgagcagcggcacgaacttgagcatgacttggacggcgttcttggcggcgatgtcgatga 187
           |||| ||||| ||||| ||||||||||| | ||||||||||| |||||||||| ||| ||
Sbjct: 952 cgaggagcgggacgaagttgagcatgacgtcgacggcgttctgggcggcgatggcgagga 893

                                                                       
Query: 188 aggtgctggcctcgttcccgagcgcggagcctcccccggcgaggtcggagagcgagcgga 247
           |   || ||||||||| ||||||| |||||| || || |||||||||||||| |||||||
Sbjct: 892 actcgccggcctcgttgccgagcgaggagccgccgccagcgaggtcggagagggagcgga 833

                                                                       
Query: 248 tggtgaggaacggcaccccctgcgtgtgcgccacgagggccacggcagcgctctccatct 307
           ||||||||||||| ||  | |||  |||||||||||| |||||||| |||||||||||||
Sbjct: 832 tggtgaggaacgggacggcgtgctggtgcgccacgagcgccacggcggcgctctccatct 773

                                                                       
Query: 308 ccacgggggtgcacccgaactgcttgcggaggaactggcggtactcggcgttgtccagga 367
           |||| || |||||||||||||     || |||||||| |||||  |||||||||| ||||
Sbjct: 772 ccaccggcgtgcacccgaacttggcccgcaggaactgacggtaggcggcgttgtcgagga 713

                                                                       
Query: 368 acacgttggcgctgcagcccttgctgactcgggtgacccgcggcgcgcggggcaggcacg 427
           |||||||||||||||| ||| | || || |  || |||| |||||| || ||||||||||
Sbjct: 712 acacgttggcgctgcaccccctcctcaccctcgtcaccctcggcgcccgcggcaggcacg 653

             
Query: 428 tc 429
           ||
Sbjct: 652 tc 651
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  210 bits (106), Expect = 3e-51
 Identities = 253/302 (83%)
 Strand = Plus / Plus

                                                                           
Query: 128     cgagcagcggcacgaacttgagcatgacttggacggcgttcttggcggcgatgtcgatga 187
               |||| ||||| ||||| ||||||||||| | ||||||||||| |||||||||| ||| ||
Sbjct: 7184527 cgaggagcgggacgaagttgagcatgacgtcgacggcgttctgggcggcgatggcgagga 7184586

                                                                           
Query: 188     aggtgctggcctcgttcccgagcgcggagcctcccccggcgaggtcggagagcgagcgga 247
               |   || ||||||||| ||||||| |||||| || || |||||||||||||| |||||||
Sbjct: 7184587 actcgccggcctcgttgccgagcgaggagccgccgccagcgaggtcggagagggagcgga 7184646

                                                                           
Query: 248     tggtgaggaacggcaccccctgcgtgtgcgccacgagggccacggcagcgctctccatct 307
               ||||||||||||| ||  | |||  |||||||||||| |||||||| |||||||||||||
Sbjct: 7184647 tggtgaggaacgggacggcgtgctggtgcgccacgagcgccacggcggcgctctccatct 7184706

                                                                           
Query: 308     ccacgggggtgcacccgaactgcttgcggaggaactggcggtactcggcgttgtccagga 367
               |||| || |||||||||||||     || |||||||| |||||  |||||||||| ||||
Sbjct: 7184707 ccaccggcgtgcacccgaacttggcccgcaggaactgacggtaggcggcgttgtcgagga 7184766

                                                                           
Query: 368     acacgttggcgctgcagcccttgctgactcgggtgacccgcggcgcgcggggcaggcacg 427
               |||||||||||||||| ||| | || || |  || |||| |||||| || ||||||||||
Sbjct: 7184767 acacgttggcgctgcaccccctcctcaccctcgtcaccctcggcgcccgcggcaggcacg 7184826

                 
Query: 428     tc 429
               ||
Sbjct: 7184827 tc 7184828
to top
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485D09
          Length = 150594

 Score =  210 bits (106), Expect = 3e-51
 Identities = 253/302 (83%)
 Strand = Plus / Plus

                                                                         
Query: 128   cgagcagcggcacgaacttgagcatgacttggacggcgttcttggcggcgatgtcgatga 187
             |||| ||||| ||||| ||||||||||| | ||||||||||| |||||||||| ||| ||
Sbjct: 79175 cgaggagcgggacgaagttgagcatgacgtcgacggcgttctgggcggcgatggcgagga 79234

                                                                         
Query: 188   aggtgctggcctcgttcccgagcgcggagcctcccccggcgaggtcggagagcgagcgga 247
             |   || ||||||||| ||||||| |||||| || || |||||||||||||| |||||||
Sbjct: 79235 actcgccggcctcgttgccgagcgaggagccgccgccagcgaggtcggagagggagcgga 79294

                                                                         
Query: 248   tggtgaggaacggcaccccctgcgtgtgcgccacgagggccacggcagcgctctccatct 307
             ||||||||||||| ||  | |||  |||||||||||| |||||||| |||||||||||||
Sbjct: 79295 tggtgaggaacgggacggcgtgctggtgcgccacgagcgccacggcggcgctctccatct 79354

                                                                         
Query: 308   ccacgggggtgcacccgaactgcttgcggaggaactggcggtactcggcgttgtccagga 367
             |||| || |||||||||||||     || |||||||| |||||  |||||||||| ||||
Sbjct: 79355 ccaccggcgtgcacccgaacttggcccgcaggaactgacggtaggcggcgttgtcgagga 79414

                                                                         
Query: 368   acacgttggcgctgcagcccttgctgactcgggtgacccgcggcgcgcggggcaggcacg 427
             |||||||||||||||| ||| | || || |  || |||| |||||| || ||||||||||
Sbjct: 79415 acacgttggcgctgcaccccctcctcaccctcgtcaccctcggcgcccgcggcaggcacg 79474

               
Query: 428   tc 429
             ||
Sbjct: 79475 tc 79476
to top
>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10,
              complete sequence
          Length = 138209

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                          
Query: 210    cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaacggcaccccctg 269
              ||||||||| || |||||||||||||||||||| || |||| || ||||||| |||||||
Sbjct: 111726 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 111785

               
Query: 270    c 270
              |
Sbjct: 111786 c 111786
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                           
Query: 210     cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaacggcaccccctg 269
               ||||||||| || |||||||||||||||||||| || |||| || ||||||| |||||||
Sbjct: 7675331 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 7675390

                
Query: 270     c 270
               |
Sbjct: 7675391 c 7675391
to top
>dbj|AK101642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055L05, full
            insert sequence
          Length = 1387

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 210  cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaacggcaccccctg 269
            ||||||||| || |||||||||||||||||||| || |||| || ||||||| |||||||
Sbjct: 1142 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 1083

             
Query: 270  c 270
            |
Sbjct: 1082 c 1082
to top
>dbj|AK064229.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H04, full
            insert sequence
          Length = 1470

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 210  cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaacggcaccccctg 269
            ||||||||| || |||||||||||||||||||| || |||| || ||||||| |||||||
Sbjct: 1225 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 1166

             
Query: 270  c 270
            |
Sbjct: 1165 c 1165
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 111     ctcctcggcgctcttgccgagca 133
               |||||||||||||||||||||||
Sbjct: 1803607 ctcctcggcgctcttgccgagca 1803629



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 115     tcggcgctcttgccgagcagcggcacga 142
               ||||||||| ||||||||||| ||||||
Sbjct: 5004615 tcggcgctcatgccgagcagccgcacga 5004642



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 171     ggcggcgatgtcgatgaaggtgct 194
               |||| |||||||||||||||||||
Sbjct: 1475942 ggcgacgatgtcgatgaaggtgct 1475965
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 87      gtccgcggccgcgccgtcgtcc 108
               ||||||||||||||||||||||
Sbjct: 1696642 gtccgcggccgcgccgtcgtcc 1696663
to top
>gb|BC095614.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S protein 5, mRNA
           (cDNA clone MGC:111955 IMAGE:7248997), complete cds
          Length = 541

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 57  tggacaagtggctgctggctca 78
           ||||||||||||||||||||||
Sbjct: 110 tggacaagtggctgctggctca 131
to top
>ref|NM_001020633.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S protein 5
           (ndufs5), mRNA
          Length = 541

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 57  tggacaagtggctgctggctca 78
           ||||||||||||||||||||||
Sbjct: 110 tggacaagtggctgctggctca 131
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 87      gtccgcggccgcgccgtcgtcc 108
               ||||||||||||||||||||||
Sbjct: 3031532 gtccgcggccgcgccgtcgtcc 3031553
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 87      gtccgcggccgcgccgtcgtcc 108
               ||||||||||||||||||||||
Sbjct: 2180357 gtccgcggccgcgccgtcgtcc 2180378
to top
>emb|CR753876.17| Zebrafish DNA sequence from clone DKEYP-116A7 in linkage group 19,
             complete sequence
          Length = 118451

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 57    tggacaagtggctgctggctca 78
             ||||||||||||||||||||||
Sbjct: 57921 tggacaagtggctgctggctca 57900
to top
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 221     ccccggcgaggtcggagagcg 241
               |||||||||||||||||||||
Sbjct: 1023950 ccccggcgaggtcggagagcg 1023930
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 124     ttgccgagcagcggcacgaac 144
               |||||||||||||||||||||
Sbjct: 2080153 ttgccgagcagcggcacgaac 2080173
to top
>gb|AF328738.1|AF328738 Agelaius phoeniceus cosmid Rwcos3, partial sequence
          Length = 45375

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 207   gagcgcggagcctcccccggc 227
             |||||||||||||||||||||
Sbjct: 16121 gagcgcggagcctcccccggc 16101
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 171     ggcggcgatgtcgatgaaggt 191
               |||||||||||||||||||||
Sbjct: 4024810 ggcggcgatgtcgatgaaggt 4024830
to top
>ref|XM_469921.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1369

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 224 cggcgaggtcggagagcgag 243
           ||||||||||||||||||||
Sbjct: 391 cggcgaggtcggagagcgag 372
to top
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
              22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 247    atggtgaggaacggcaccccctgc 270
              |||||||||||||| |||||||||
Sbjct: 206897 atggtgaggaacgggaccccctgc 206874
to top
>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence
          Length = 235930

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 378    gctgcagcccttgctgactc 397
              ||||||||||||||||||||
Sbjct: 160929 gctgcagcccttgctgactc 160948
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 224      cggcgaggtcggagagcgag 243
                ||||||||||||||||||||
Sbjct: 32498522 cggcgaggtcggagagcgag 32498541
to top
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 247    atggtgaggaacggcaccccctgc 270
              |||||||||||||| |||||||||
Sbjct: 193483 atggtgaggaacgggaccccctgc 193460
to top
>gb|AY224542.1| Oryza sativa (japonica cultivar-group) isolate 23484 heavy
           meromyosin-like protein mRNA, complete cds
          Length = 1071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 224 cggcgaggtcggagagcgag 243
           ||||||||||||||||||||
Sbjct: 391 cggcgaggtcggagagcgag 372
to top
>ref|XM_534485.2| PREDICTED: Canis familiaris similar to thrombospondin type I
            domain-containing 1 isoform 1 (LOC477293), mRNA
          Length = 2824

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   tgtccgcggccgcgccgtcg 105
            ||||||||||||||||||||
Sbjct: 1777 tgtccgcggccgcgccgtcg 1758
to top
>gb|AC134384.6| Mus musculus strain C57BL/6J clone rp23-393d21, complete sequence
          Length = 227620

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 247    atggtgaggaacggcaccccctgc 270
              |||||||||||||| |||||||||
Sbjct: 210073 atggtgaggaacgggaccccctgc 210096
to top
>gb|AC134383.11| Mus musculus strain C57BL/6J clone rp23-348k4, complete sequence
          Length = 227587

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 247    atggtgaggaacggcaccccctgc 270
              |||||||||||||| |||||||||
Sbjct: 210040 atggtgaggaacgggaccccctgc 210063
to top
>emb|BX063779.1|CNS09LDJ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC45DC05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 930

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 130 agcagcggcacgaacttgagcatg 153
           |||||||| |||||||||||||||
Sbjct: 646 agcagcggaacgaacttgagcatg 669
to top
>gb|AC163199.8| Mus musculus 6 BAC RP23-333F8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 233589

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    ccacgagggccacggcagcg 297
              ||||||||||||||||||||
Sbjct: 131205 ccacgagggccacggcagcg 131186
to top
>gb|AC008019.60| Mus musculus strain 129S6/SvEvTac chromosome 16 clone rp21-519i24,
             complete sequence
          Length = 189707

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 247   atggtgaggaacggcaccccctgc 270
             |||||||||||||| |||||||||
Sbjct: 81926 atggtgaggaacgggaccccctgc 81903
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 96      cgcgccgtcgtccatctcct 115
               ||||||||||||||||||||
Sbjct: 1294753 cgcgccgtcgtccatctcct 1294772
to top
>gb|AE012007.1| Xanthomonas axonopodis pv. citri str. 306,  section 385 of 469 of
           the complete genome
          Length = 10826

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 405 ccgcggcgcgcggggcaggc 424
           ||||||||||||||||||||
Sbjct: 969 ccgcggcgcgcggggcaggc 950
to top
>gb|AE012392.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 300
            of 460 of the complete genome
          Length = 10825

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   cgcgccgtcgtccatctcct 115
            ||||||||||||||||||||
Sbjct: 5403 cgcgccgtcgtccatctcct 5384
to top
>dbj|AK147751.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
           clone:G270023O13 product:ring finger protein 127, full
           insert sequence
          Length = 2225

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 ccgcggcgcgcggggcaggc 424
           ||||||||||||||||||||
Sbjct: 811 ccgcggcgcgcggggcaggc 830
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 96      cgcgccgtcgtccatctcct 115
               ||||||||||||||||||||
Sbjct: 1603085 cgcgccgtcgtccatctcct 1603104
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 224      cggcgaggtcggagagcgag 243
                ||||||||||||||||||||
Sbjct: 32589032 cggcgaggtcggagagcgag 32589051
to top
>gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, complete sequence
          Length = 168432

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 247    atggtgaggaacggcaccccctgc 270
              |||||||||||||| |||||||||
Sbjct: 125413 atggtgaggaacgggaccccctgc 125390
to top
>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete
             sequence
          Length = 119134

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   cggcgaggtcggagagcgag 243
             ||||||||||||||||||||
Sbjct: 31971 cggcgaggtcggagagcgag 31990
to top
>dbj|AK071787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110P10, full
           insert sequence
          Length = 1524

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 224 cggcgaggtcggagagcgag 243
           ||||||||||||||||||||
Sbjct: 546 cggcgaggtcggagagcgag 527
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 164     cgttcttggcggcgatgtcg 183
               ||||||||||||||||||||
Sbjct: 1199176 cgttcttggcggcgatgtcg 1199195
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 96      cgcgccgtcgtccatctcct 115
               ||||||||||||||||||||
Sbjct: 1318531 cgcgccgtcgtccatctcct 1318550


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,435,504
Number of Sequences: 3902068
Number of extensions: 2435504
Number of successful extensions: 50493
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49131
Number of HSP's gapped (non-prelim): 1356
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top