ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197219.1| Oryza sativa (japonica cultivar-group) putative... 58 3e-05
2gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 58 3e-05
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
4dbj|AK105774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
5dbj|AK072008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
6dbj|AK069511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
7gb|AY106431.1| Zea mays PCO116332 mRNA sequence 58 3e-05
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
9gb|DQ160098.1| Taraxacum officinale TO82a-3 (To82a-3) mRNA, part... 50 0.007
10gb|BT009156.1| Triticum aestivum clone wl1n.pk0068.d3:fis, full ... 50 0.007
11gb|AY104410.1| Zea mays PCO116331 mRNA sequence 50 0.007
12emb|AL513016.5| Human DNA sequence from clone RP11-474O21 on chr... 44 0.44
13emb|CR855878.5| Human DNA sequence from clone RP13-469P20 on chr... 44 0.44
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
15dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
16ref|NM_124603.2| Arabidopsis thaliana MSBP1 AT5G52240 (MSBP1) mR... 42 1.7
17gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, c... 42 1.7
18gb|BT000922.1| Arabidopsis thaliana clone C105100 putative proge... 42 1.7
19gb|AC116766.9| Mus musculus chromosome 18, clone RP23-395B17, co... 42 1.7
20gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete se... 42 1.7
21ref|XM_783458.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.7
22gb|AY046006.1| Arabidopsis thaliana At5g52240 mRNA sequence 42 1.7
23ref|XM_789544.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.7
24gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosom... 42 1.7
25emb|BX829533.1|CNS0A08R Arabidopsis thaliana Full-length cDNA Co... 42 1.7
26emb|BX832321.1|CNS09ZQE Arabidopsis thaliana Full-length cDNA Co... 42 1.7
27gb|AY086811.1| Arabidopsis thaliana clone 28003 mRNA, complete s... 42 1.7
28gb|AF284446.1|AF284446 Homo sapiens tumor-related protein DRC2 (... 42 1.7
29dbj|AB025603.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.7
30gb|AF153284.1|AF153284 Arabidopsis thaliana putative progesteron... 42 1.7
31dbj|AP003154.2| Mus musculus genomic DN, chromosome 16 clone:RP2... 42 1.7
32dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.7
33emb|CT030190.9| Mouse DNA sequence from clone RP23-115D20 on chr... 42 1.7
34ref|NM_106297.1| Arabidopsis thaliana cinnamoyl-CoA reductase AT... 40 6.8
35ref|NM_114748.2| Arabidopsis thaliana ATMP2 AT3G48890 (ATMP2) mR... 40 6.8
36ref|NM_103819.1| Arabidopsis thaliana unknown protein AT1G49290 ... 40 6.8
37gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, com... 40 6.8
38gb|AE007249.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 6.8
39ref|NM_029070.1| Mus musculus RIKEN cDNA 4930511J11 gene (493051... 40 6.8
40emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 i... 40 6.8
41gb|DQ459168.1| Arabidopsis thaliana unknown (At1g49290) gene, co... 40 6.8
42gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 geno... 40 6.8
43gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome... 40 6.8
44gb|AE004137.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 6.8
45emb|Z99290.1|HS299C21 Human DNA sequence from clone RP1-299C21 o... 40 6.8
46emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome 3, B... 40 6.8
47gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.8
48gb|AY079104.1| Arabidopsis thaliana AT3g48890/T21J18_160 mRNA, c... 40 6.8
49gb|AF419567.1|AF419567 Arabidopsis thaliana AT3g48890/T21J18_160... 40 6.8
50gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14... 40 6.8
51dbj|AK015757.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.8
52emb|BX824682.1|CNS0A7KU Arabidopsis thaliana Full-length cDNA Co... 40 6.8
53gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15... 40 6.8
54gb|BC027071.1| Mus musculus RIKEN cDNA 4930511J11 gene, mRNA (cD... 40 6.8
55gb|AF153283.1|AF153283 Arabidopsis thaliana putative progesteron... 40 6.8
56dbj|AP001021.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.8
57dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.8 
>ref|NM_197219.1| Oryza sativa (japonica cultivar-group) putative steroid membrane
           binding protein (OSJNBb0073N24.4), mRNA
          Length = 909

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 334 tccttctcttttacctcctccgagctcacctccctcggctt 374
           ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 650 tccttttcttttacttcctccgagcttacctccctcggctt 610



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 465 cttcttgacggtaccgaccttcacatacttgctcatgaact 505
           |||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 513 cttcttgacggtaccgaccttcacgtacttgcccataaact 473
to top
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
             sequence
          Length = 130058

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 465   cttcttgacggtaccgaccttcacatacttgctcatgaact 505
             |||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 16650 cttcttgacggtaccgaccttcacgtacttgcccataaact 16690



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 334   tccttctcttttacctcctccgagctcacctccctcggctt 374
             ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 16513 tccttttcttttacttcctccgagcttacctccctcggctt 16553
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 465      cttcttgacggtaccgaccttcacatacttgctcatgaact 505
                |||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 18655372 cttcttgacggtaccgaccttcacgtacttgcccataaact 18655412



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 334      tccttctcttttacctcctccgagctcacctccctcggctt 374
                ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 18655235 tccttttcttttacttcctccgagcttacctccctcggctt 18655275
to top
>dbj|AK105774.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F02, full
           insert sequence
          Length = 985

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 334 tccttctcttttacctcctccgagctcacctccctcggctt 374
           ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 728 tccttttcttttacttcctccgagcttacctccctcggctt 688



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 465 cttcttgacggtaccgaccttcacatacttgctcatgaact 505
           |||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 591 cttcttgacggtaccgaccttcacgtacttgcccataaact 551
to top
>dbj|AK072008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099K01, full
            insert sequence
          Length = 2077

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 334  tccttctcttttacctcctccgagctcacctccctcggctt 374
            ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 2040 tccttttcttttacttcctccgagcttacctccctcggctt 2000



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 465  cttcttgacggtaccgaccttcacatacttgctcatgaact 505
            |||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 1903 cttcttgacggtaccgaccttcacgtacttgcccataaact 1863
to top
>dbj|AK069511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019P08, full
           insert sequence
          Length = 1030

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 334 tccttctcttttacctcctccgagctcacctccctcggctt 374
           ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 773 tccttttcttttacttcctccgagcttacctccctcggctt 733



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 465 cttcttgacggtaccgaccttcacatacttgctcatgaact 505
           |||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 636 cttcttgacggtaccgaccttcacgtacttgcccataaact 596
to top
>gb|AY106431.1| Zea mays PCO116332 mRNA sequence
          Length = 1139

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 465 cttcttgacggtaccgaccttcacatacttgctcatgaact 505
           ||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 578 cttcttgaccgtgccgaccttcacgtacttgctcatgaact 538
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 465      cttcttgacggtaccgaccttcacatacttgctcatgaact 505
                |||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 18666225 cttcttgacggtaccgaccttcacgtacttgcccataaact 18666265



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 334      tccttctcttttacctcctccgagctcacctccctcggctt 374
                ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 18666088 tccttttcttttacttcctccgagcttacctccctcggctt 18666128
to top
>gb|DQ160098.1| Taraxacum officinale TO82a-3 (To82a-3) mRNA, partial cds
          Length = 344

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 469 ttgacggtaccgaccttcacatacttgctcatgaact 505
           |||||||| ||||||||  ||||||||||||||||||
Sbjct: 69  ttgacggttccgaccttggcatacttgctcatgaact 33
to top
>gb|BT009156.1| Triticum aestivum clone wl1n.pk0068.d3:fis, full insert mRNA
           sequence
          Length = 1125

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 465 cttcttgacggtaccgaccttcacatacttgctcatgaact 505
           |||| |||| ||||| |||||||| ||||||||||||||||
Sbjct: 644 cttcgtgacagtacccaccttcacgtacttgctcatgaact 604
to top
>gb|AY104410.1| Zea mays PCO116331 mRNA sequence
          Length = 790

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 465 cttcttgacggtaccgaccttcacatacttgctcatgaact 505
           |||| |||| ||||| |||||||| ||||||||||||||||
Sbjct: 275 cttcgtgacagtacccaccttcacgtacttgctcatgaact 235
to top
>emb|AL513016.5| Human DNA sequence from clone RP11-474O21 on chromosome 1 Contains the
             5' end of the gene for short-chain dehydrogenase/reductase
             1 (SDR1), two genes for novel proteins similar to
             esterases, a ribosomal protein L23a (RPL23A) pseudogene,
             the gene for a novel protein (MGC35194) and a CpG island,
             complete sequence
          Length = 150720

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 446   cctcttctccaagaaatgccttcttg 471
             |||||||||||||||| |||||||||
Sbjct: 88898 cctcttctccaagaaaggccttcttg 88873
to top
>emb|CR855878.5| Human DNA sequence from clone RP13-469P20 on chromosome 1, complete
             sequence
          Length = 225410

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 446   cctcttctccaagaaatgccttcttg 471
             |||||||||||||||| |||||||||
Sbjct: 88944 cctcttctccaagaaaggccttcttg 88919
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 218     gtccaagtccaacgtgctggta 239
               ||||||||||||||||||||||
Sbjct: 1683155 gtccaagtccaacgtgctggta 1683176
to top
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0582D05
          Length = 150483

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 218   gtccaagtccaacgtgctggta 239
             ||||||||||||||||||||||
Sbjct: 82655 gtccaagtccaacgtgctggta 82676
to top
>ref|NM_124603.2| Arabidopsis thaliana MSBP1 AT5G52240 (MSBP1) mRNA, complete cds
          Length = 906

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 469 ttgacggtaccgaccttcacatacttgctcatgaact 505
           ||||| ||||| |||||  ||||||||||||||||||
Sbjct: 573 ttgacagtaccaaccttagcatacttgctcatgaact 537
to top
>gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, complete sequence
          Length = 210797

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 334    tccttctcttttacctcctcc 354
              |||||||||||||||||||||
Sbjct: 111084 tccttctcttttacctcctcc 111064
to top
>gb|BT000922.1| Arabidopsis thaliana clone C105100 putative progesterone-binding
           protein (At5g52240) mRNA, complete cds
          Length = 694

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 469 ttgacggtaccgaccttcacatacttgctcatgaact 505
           ||||| ||||| |||||  ||||||||||||||||||
Sbjct: 512 ttgacagtaccaaccttagcatacttgctcatgaact 476
to top
>gb|AC116766.9| Mus musculus chromosome 18, clone RP23-395B17, complete sequence
          Length = 207631

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 334    tccttctcttttacctcctcc 354
              |||||||||||||||||||||
Sbjct: 141735 tccttctcttttacctcctcc 141715
to top
>gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete sequence
          Length = 137979

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   caacagacgacttaacaaatg 129
             |||||||||||||||||||||
Sbjct: 42681 caacagacgacttaacaaatg 42701
to top
>ref|XM_783458.1| PREDICTED: Strongylocentrotus purpuratus similar to CG5543-PA
           (LOC583554), partial mRNA
          Length = 1636

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 257 gatacagatttattgccatga 277
           |||||||||||||||||||||
Sbjct: 605 gatacagatttattgccatga 585
to top
>gb|AY046006.1| Arabidopsis thaliana At5g52240 mRNA sequence
          Length = 861

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 469 ttgacggtaccgaccttcacatacttgctcatgaact 505
           ||||| ||||| |||||  ||||||||||||||||||
Sbjct: 559 ttgacagtaccaaccttagcatacttgctcatgaact 523
to top
>ref|XM_789544.1| PREDICTED: Strongylocentrotus purpuratus similar to CG5543-PA
           (LOC589915), mRNA
          Length = 2043

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 257 gatacagatttattgccatga 277
           |||||||||||||||||||||
Sbjct: 599 gatacagatttattgccatga 579
to top
>gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosome 16, complete sequence
          Length = 165496

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 317    ctgcatcagctgcggcttcct 337
              |||||||||||||||||||||
Sbjct: 149943 ctgcatcagctgcggcttcct 149963
to top
>emb|BX829533.1|CNS0A08R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB19ZD11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 841

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 469 ttgacggtaccgaccttcacatacttgctcatgaact 505
           ||||| ||||| |||||  ||||||||||||||||||
Sbjct: 534 ttgacagtaccaaccttagcatacttgctcatgaact 498
to top
>emb|BX832321.1|CNS09ZQE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH65ZD11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 869

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 469 ttgacggtaccgaccttcacatacttgctcatgaact 505
           ||||| ||||| |||||  ||||||||||||||||||
Sbjct: 559 ttgacagtaccaaccttagcatacttgctcatgaact 523
to top
>gb|AY086811.1| Arabidopsis thaliana clone 28003 mRNA, complete sequence
          Length = 889

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 469 ttgacggtaccgaccttcacatacttgctcatgaact 505
           ||||| ||||| |||||  ||||||||||||||||||
Sbjct: 556 ttgacagtaccaaccttagcatacttgctcatgaact 520
to top
>gb|AF284446.1|AF284446 Homo sapiens tumor-related protein DRC2 (DRC2) gene, complete cds
          Length = 25172

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 334   tccttctcttttacctcctcc 354
             |||||||||||||||||||||
Sbjct: 15677 tccttctcttttacctcctcc 15657
to top
>dbj|AB025603.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F17P19
          Length = 48420

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 469   ttgacggtaccgaccttcacatacttgctcatgaact 505
             ||||| ||||| |||||  ||||||||||||||||||
Sbjct: 34547 ttgacagtaccaaccttagcatacttgctcatgaact 34511
to top
>gb|AF153284.1|AF153284 Arabidopsis thaliana putative progesterone-binding protein homolog
           (Atmp1) mRNA, complete cds
          Length = 847

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 469 ttgacggtaccgaccttcacatacttgctcatgaact 505
           ||||| ||||| |||||  ||||||||||||||||||
Sbjct: 573 ttgacagtaccaaccttagcatacttgctcatgaact 537
to top
>dbj|AP003154.2| Mus musculus genomic DN, chromosome 16 clone:RP21-564B5, complete
             sequence
          Length = 111402

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 317   ctgcatcagctgcggcttcct 337
             |||||||||||||||||||||
Sbjct: 61511 ctgcatcagctgcggcttcct 61491
to top
>dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-338H14, complete
             sequence
          Length = 175731

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 80    cagcagctaaattattcacccaaaa 104
             |||||||||||||||||| ||||||
Sbjct: 84302 cagcagctaaattattcatccaaaa 84278
to top
>emb|CT030190.9| Mouse DNA sequence from clone RP23-115D20 on chromosome 16, complete
              sequence
          Length = 228196

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 317    ctgcatcagctgcggcttcct 337
              |||||||||||||||||||||
Sbjct: 184045 ctgcatcagctgcggcttcct 184025
to top
>ref|NM_106297.1| Arabidopsis thaliana cinnamoyl-CoA reductase AT1G76470 mRNA,
           complete cds
          Length = 983

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 cttccttctcttttacctcc 351
           ||||||||||||||||||||
Sbjct: 864 cttccttctcttttacctcc 845
to top
>ref|NM_114748.2| Arabidopsis thaliana ATMP2 AT3G48890 (ATMP2) mRNA, complete cds
          Length = 990

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 478 ccgaccttcacatacttgctcatgaact 505
           ||||| || |||||||||||||||||||
Sbjct: 559 ccgactttgacatacttgctcatgaact 532
to top
>ref|NM_103819.1| Arabidopsis thaliana unknown protein AT1G49290 mRNA, complete cds
          Length = 1017

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 cttccttctcttttacctcc 351
           ||||||||||||||||||||
Sbjct: 703 cttccttctcttttacctcc 684
to top
>gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, complete sequence
          Length = 210051

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 320    catcagctgcggcttccttctctt 343
              |||||||||| |||||||||||||
Sbjct: 109167 catcagctgctgcttccttctctt 109190
to top
>gb|AE007249.1| Sinorhizobium meliloti 1021 plasmid pSymA section 55 of 121 of the
            complete plasmid sequence
          Length = 10029

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 362  cctccctcggcttgtgctca 381
            ||||||||||||||||||||
Sbjct: 9576 cctccctcggcttgtgctca 9557
to top
>ref|NM_029070.1| Mus musculus RIKEN cDNA 4930511J11 gene (4930511J11Rik), mRNA
          Length = 1407

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 cctcctccgagctcacctcc 366
           ||||||||||||||||||||
Sbjct: 866 cctcctccgagctcacctcc 885
to top
>emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 in linkage group 9,
              complete sequence
          Length = 218171

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    ttccttctcttttacctcct 352
              ||||||||||||||||||||
Sbjct: 174362 ttccttctcttttacctcct 174381
to top
>gb|DQ459168.1| Arabidopsis thaliana unknown (At1g49290) gene, complete cds
          Length = 1017

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 cttccttctcttttacctcc 351
           ||||||||||||||||||||
Sbjct: 703 cttccttctcttttacctcc 684
to top
>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete
              sequence
          Length = 125021

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    cttccttctcttttacctcc 351
              ||||||||||||||||||||
Sbjct: 110987 cttccttctcttttacctcc 110968
to top
>gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome 16, complete sequence
          Length = 230221

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    cctcctccgagctcacctcc 366
              ||||||||||||||||||||
Sbjct: 168533 cctcctccgagctcacctcc 168552
to top
>gb|AE004137.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 45
            of 251 of the complete chromosome
          Length = 10291

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   cacccaaaagtatcaacaga 115
            ||||||||||||||||||||
Sbjct: 5985 cacccaaaagtatcaacaga 5966
to top
>emb|Z99290.1|HS299C21 Human DNA sequence from clone RP1-299C21 on chromosome 6q16, complete
             sequence
          Length = 77183

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   tggctgtttctggggatgtg 435
             ||||||||||||||||||||
Sbjct: 29907 tggctgtttctggggatgtg 29926
to top
>emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome 3, BAC clone T21J18
          Length = 82912

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 478   ccgaccttcacatacttgctcatgaact 505
             ||||| || |||||||||||||||||||
Sbjct: 79581 ccgactttgacatacttgctcatgaact 79554
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    gctgcggcttccttctcttt 344
              ||||||||||||||||||||
Sbjct: 477500 gctgcggcttccttctcttt 477481
to top
>gb|AY079104.1| Arabidopsis thaliana AT3g48890/T21J18_160 mRNA, complete cds
          Length = 702

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 478 ccgaccttcacatacttgctcatgaact 505
           ||||| || |||||||||||||||||||
Sbjct: 491 ccgactttgacatacttgctcatgaact 464
to top
>gb|AF419567.1|AF419567 Arabidopsis thaliana AT3g48890/T21J18_160 mRNA, complete cds
          Length = 945

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 478 ccgaccttcacatacttgctcatgaact 505
           ||||| || |||||||||||||||||||
Sbjct: 559 ccgactttgacatacttgctcatgaact 532
to top
>gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14G6 genomic sequence, complete
             sequence
          Length = 100806

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   cttccttctcttttacctcc 351
             ||||||||||||||||||||
Sbjct: 26376 cttccttctcttttacctcc 26395
to top
>dbj|AK015757.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930511J11 product:hypothetical
           PMP-22/EMP/MP20 and claudin family containing protein,
           full insert sequence
          Length = 1407

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 cctcctccgagctcacctcc 366
           ||||||||||||||||||||
Sbjct: 866 cctcctccgagctcacctcc 885
to top
>emb|BX824682.1|CNS0A7KU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH64ZC05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 912

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 478 ccgaccttcacatacttgctcatgaact 505
           ||||| || |||||||||||||||||||
Sbjct: 541 ccgactttgacatacttgctcatgaact 514
to top
>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete
             sequence
          Length = 94487

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   cttccttctcttttacctcc 351
             ||||||||||||||||||||
Sbjct: 15387 cttccttctcttttacctcc 15368
to top
>gb|BC027071.1| Mus musculus RIKEN cDNA 4930511J11 gene, mRNA (cDNA clone MGC:38714
           IMAGE:5357758), complete cds
          Length = 1393

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 cctcctccgagctcacctcc 366
           ||||||||||||||||||||
Sbjct: 838 cctcctccgagctcacctcc 857
to top
>gb|AF153283.1|AF153283 Arabidopsis thaliana putative progesterone-binding protein homolog
           (Atmp2) mRNA, complete cds
          Length = 930

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 478 ccgaccttcacatacttgctcatgaact 505
           ||||| || |||||||||||||||||||
Sbjct: 502 ccgactttgacatacttgctcatgaact 475
to top
>dbj|AP001021.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-793A3, complete
              sequence
          Length = 222596

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 359    tcacctccctcggcttgtgctcag 382
              ||||||||||| ||||||||||||
Sbjct: 176651 tcacctccctcagcttgtgctcag 176674
to top
>dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-119P12, complete
             sequence
          Length = 186978

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 359   tcacctccctcggcttgtgctcag 382
             ||||||||||| ||||||||||||
Sbjct: 18732 tcacctccctcagcttgtgctcag 18755


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,008,783
Number of Sequences: 3902068
Number of extensions: 4008783
Number of successful extensions: 72356
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72184
Number of HSP's gapped (non-prelim): 172
length of query: 505
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 483
effective length of database: 17,147,199,772
effective search space: 8282097489876
effective search space used: 8282097489876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top