ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GHT2_SCHPO (O74969) High-affinity glucose transporter ght2 (Hexo... 31 0.99
2SMCA4_HUMAN (P51532) Probable global transcription activator SNF... 29 3.7
3ARAA_THEMA (Q9WYB3) L-arabinose isomerase (EC 5.3.1.4) 28 4.9
4IF37_HUMAN (O15371) Eukaryotic translation initiation factor 3 s... 28 6.4

>GHT2_SCHPO (O74969) High-affinity glucose transporter ght2 (Hexose transporter|
           2)
          Length = 531

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 215 PWNGGSFILEVMPRQVVQKEKKRLEMKPLEQANLKEPMDGPSGDPQHASEE 63
           PW  G+F L    ++ V+KEK R      E     E        PQ++S E
Sbjct: 477 PWESGNFKLNYSEQKKVEKEKSRKGGARGESVEYVERASNTDSSPQYSSHE 527



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>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA4) (SNF2-beta)
           (BRG-1 protein) (Mitotic growth and transcription
           activator) (Brahma protein homolog 1) (SWI/SNF-related
           matrix-associated actin
          Length = 1647

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -1

Query: 194 ILEVMPR----QVVQKEKKRLEMKPLEQANLKEPMDGPSGDPQHASEEPS 57
           + E++P+    QV +++KK+ + K  E A  + P  GP G+P   + + S
Sbjct: 564 LTELVPQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMS 613



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>ARAA_THEMA (Q9WYB3) L-arabinose isomerase (EC 5.3.1.4)|
          Length = 496

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -1

Query: 203 GSFILEVMPRQVVQKEKKRLEMKPLEQANLKEP----MDGPSGDPQHAS 69
           G+ +LEV P   + KEK R+E+ PL      +P     DG  G   +AS
Sbjct: 344 GAHMLEVCP--TIAKEKPRIEVHPLSIGGKADPARLVFDGQEGPAVNAS 390



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>IF37_HUMAN (O15371) Eukaryotic translation initiation factor 3 subunit 7|
           (eIF-3 zeta) (eIF3 p66) (eIF3d)
          Length = 548

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -1

Query: 197 FILEVMPRQVVQKEKK--RLEMKPLEQANLKEPMDGPSGDPQHASEE 63
           F L+++P+   QKE++  RL+ K  +Q  +++  D  S  P+ +S E
Sbjct: 117 FNLQILPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVE 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,997,956
Number of Sequences: 219361
Number of extensions: 518018
Number of successful extensions: 1726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1726
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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