ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart24b09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192524.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 125 bits (63), Expect = 6e-26 Identities = 78/83 (93%) Strand = Plus / Minus Query: 132 gggcttcatctcaagtctcttcttctccttctggacgacctgcctaggcatcacctccag 191 |||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1029 gggcttcatctctagcttcttcttctccttctggacgacttgcctaggcatcacctccag 970 Query: 192 gatgaagcttccgccgttccatg 214 |||||||||||| |||||||||| Sbjct: 969 gatgaagcttccaccgttccatg 947
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 125 bits (63), Expect = 6e-26 Identities = 78/83 (93%) Strand = Plus / Minus Query: 132 gggcttcatctcaagtctcttcttctccttctggacgacctgcctaggcatcacctccag 191 |||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| Sbjct: 22742937 gggcttcatctctagcttcttcttctccttctggacgacttgcctaggcatcacctccag 22742878 Query: 192 gatgaagcttccgccgttccatg 214 |||||||||||| |||||||||| Sbjct: 22742877 gatgaagcttccaccgttccatg 22742855 Score = 46.1 bits (23), Expect = 0.048 Identities = 29/31 (93%) Strand = Plus / Plus Query: 172 tgcctaggcatcacctccaggatgaagcttc 202 ||||||||||||||||| || |||||||||| Sbjct: 2450926 tgcctaggcatcacctctagaatgaagcttc 2450956
>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06 Length = 129402 Score = 125 bits (63), Expect = 6e-26 Identities = 78/83 (93%) Strand = Plus / Minus Query: 132 gggcttcatctcaagtctcttcttctccttctggacgacctgcctaggcatcacctccag 191 |||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| Sbjct: 119649 gggcttcatctctagcttcttcttctccttctggacgacttgcctaggcatcacctccag 119590 Query: 192 gatgaagcttccgccgttccatg 214 |||||||||||| |||||||||| Sbjct: 119589 gatgaagcttccaccgttccatg 119567
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 125 bits (63), Expect = 6e-26 Identities = 78/83 (93%) Strand = Plus / Minus Query: 132 gggcttcatctcaagtctcttcttctccttctggacgacctgcctaggcatcacctccag 191 |||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| Sbjct: 60326 gggcttcatctctagcttcttcttctccttctggacgacttgcctaggcatcacctccag 60267 Query: 192 gatgaagcttccgccgttccatg 214 |||||||||||| |||||||||| Sbjct: 60266 gatgaagcttccaccgttccatg 60244
>dbj|AK069774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028H21, full insert sequence Length = 1387 Score = 125 bits (63), Expect = 6e-26 Identities = 78/83 (93%) Strand = Plus / Minus Query: 132 gggcttcatctcaagtctcttcttctccttctggacgacctgcctaggcatcacctccag 191 |||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1090 gggcttcatctctagcttcttcttctccttctggacgacttgcctaggcatcacctccag 1031 Query: 192 gatgaagcttccgccgttccatg 214 |||||||||||| |||||||||| Sbjct: 1030 gatgaagcttccaccgttccatg 1008
>gb|AY109596.1| Zea mays CL8855_1 mRNA sequence Length = 997 Score = 61.9 bits (31), Expect = 8e-07 Identities = 70/83 (84%) Strand = Plus / Minus Query: 132 gggcttcatctcaagtctcttcttctccttctggacgacctgcctaggcatcacctccag 191 ||||||||| || ||| ||||| || |||||| || || |||| |||||||||||||| Sbjct: 519 gggcttcatgtccagtttcttcagctgcttctgcactacttgccgaggcatcacctccaa 460 Query: 192 gatgaagcttccgccgttccatg 214 ||||||||| || |||||||||| Sbjct: 459 gatgaagctgccaccgttccatg 437
>gb|BT018741.1| Zea mays clone EL01N0521D10.d mRNA sequence Length = 1598 Score = 52.0 bits (26), Expect = 8e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 177 aggcatcacctccaggatgaagcttccgccgttccatg 214 |||||||||||||| ||||||||| || |||||||||| Sbjct: 1079 aggcatcacctccaagatgaagctgccaccgttccatg 1042
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 46.1 bits (23), Expect = 0.048 Identities = 29/31 (93%) Strand = Plus / Plus Query: 172 tgcctaggcatcacctccaggatgaagcttc 202 ||||||||||||||||| || |||||||||| Sbjct: 5347 tgcctaggcatcacctctagaatgaagcttc 5377
>gb|BT019257.1| Zea mays clone Contig930.F mRNA sequence Length = 1289 Score = 44.1 bits (22), Expect = 0.19 Identities = 34/38 (89%) Strand = Plus / Plus Query: 177 aggcatcacctccaggatgaagcttccgccgttccatg 214 |||||||||||||| |||||||| || |||||||||| Sbjct: 484 aggcatcacctccaaaatgaagctgccaccgttccatg 521
>ref|XM_382636.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02460.1) partial mRNA Length = 3951 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 tctcaagtctcttcttctcct 160 ||||||||||||||||||||| Sbjct: 3877 tctcaagtctcttcttctcct 3857
>dbj|AK115386.1| Ciona intestinalis cDNA, clone:cieg049b15, full insert sequence Length = 1399 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 aggcatcacctccaggatgaa 197 ||||||||||||||||||||| Sbjct: 674 aggcatcacctccaggatgaa 694
>gb|AC124327.9| Mus musculus chromosome 8, clone RP24-490I13, complete sequence Length = 141781 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 133 ggcttcatctcaagtctcttcttctcct 160 |||||||||||||| ||||||| ||||| Sbjct: 52165 ggcttcatctcaagactcttctgctcct 52192
>ref|XM_846307.1| PREDICTED: Canis familiaris similar to prostaglandin E synthase 2 isoform 1 (LOC609101), mRNA Length = 1133 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aggcatcacctccaggatga 196 |||||||||||||||||||| Sbjct: 891 aggcatcacctccaggatga 910
>gb|AC073864.29| Homo sapiens 12 BAC RP11-227B21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 138262 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 atgctgggggtcacctgagg 94 |||||||||||||||||||| Sbjct: 103091 atgctgggggtcacctgagg 103110
>ref|XM_546597.2| PREDICTED: Canis familiaris similar to Na+/K+ -ATPase beta 2 subunit (LOC489479), mRNA Length = 1011 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 ctcttcttctccttctggacgacc 171 ||||||||||||||||||| |||| Sbjct: 42 ctcttcttctccttctggatgacc 19
>emb|AL031256.1|HS409O10 Human DNA sequence from clone RP3-409O10 on chromosome 20q12 Contains CA repeat, GSS and STS, complete sequence Length = 117994 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 tcaagtctcttcttctcctt 161 |||||||||||||||||||| Sbjct: 24040 tcaagtctcttcttctcctt 24021
>gb|AC096691.6| Oryza sativa chromosome 10 BAC OSJNBa0083M08 genomic sequence, complete sequence Length = 106110 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 ttcatctcaagtctcttctt 155 |||||||||||||||||||| Sbjct: 98671 ttcatctcaagtctcttctt 98690
>emb|AL445067.1|TACID5 Thermoplasma acidophilum complete genome; segment 5/5 Length = 268356 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 gcttcatctcaagtctcttcttct 157 ||||||||||||| |||||||||| Sbjct: 255297 gcttcatctcaaggctcttcttct 255320
>gb|AC093181.5| Oryza sativa chromosome 10 BAC OSJNBb0089F16 genomic sequence, complete sequence Length = 154696 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ttcatctcaagtctcttctt 155 |||||||||||||||||||| Sbjct: 128071 ttcatctcaagtctcttctt 128052
>dbj|AK049593.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430048N08 product:hypothetical protein, full insert sequence Length = 1923 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 133 ggcttcatctcaagtctcttcttctcct 160 |||||||||||||| ||||||| ||||| Sbjct: 1846 ggcttcatctcaagactcttctgctcct 1819
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ttcatctcaagtctcttctt 155 |||||||||||||||||||| Sbjct: 10969961 ttcatctcaagtctcttctt 10969942
>dbj|AP002801.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-875G18, complete sequence Length = 218651 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 ctcaagtctcttcttctcct 160 |||||||||||||||||||| Sbjct: 115808 ctcaagtctcttcttctcct 115789
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ttcatctcaagtctcttctt 155 |||||||||||||||||||| Sbjct: 10976001 ttcatctcaagtctcttctt 10975982 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,934,971 Number of Sequences: 3902068 Number of extensions: 1934971 Number of successful extensions: 55723 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55627 Number of HSP's gapped (non-prelim): 96 length of query: 230 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 208 effective length of database: 17,147,199,772 effective search space: 3566617552576 effective search space used: 3566617552576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
