ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart24b05 |
|---|---|
| Clone Library Name | barley_pub |
>CAP_YEAST (P17555) Adenylyl cyclase-associated protein (CAP)| Length = 526 Score = 40.4 bits (93), Expect = 0.002 Identities = 19/44 (43%), Positives = 29/44 (65%) Frame = -2 Query: 449 SSEMNVLVPSDETDGDWVEHPLPQQYIHFFKDGQFTTSPVSHSG 318 S+ +NV +P E D D+VE P+P+Q H F DG+F ++ H+G Sbjct: 484 STAINVNLPIGEDD-DYVEFPIPEQMKHSFADGKFKSAVFEHAG 526
>CAP2_MOUSE (Q9CYT6) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 476 Score = 38.5 bits (88), Expect = 0.008 Identities = 19/41 (46%), Positives = 26/41 (63%) Frame = -2 Query: 455 AKSSEMNVLVPSDETDGDWVEHPLPQQYIHFFKDGQFTTSP 333 AKSSEMNVLVP D+ D+ E P+P+Q+ + + T P Sbjct: 434 AKSSEMNVLVPQDD---DYREFPIPEQFKTIWDGSKLVTEP 471
>CAP2_HUMAN (P40123) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 477 Score = 38.1 bits (87), Expect = 0.011 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = -2 Query: 455 AKSSEMNVLVPSDETDGDWVEHPLPQQYIHFFKDGQFTTSP 333 AKSSEMN+L+P DGD+ E P+P+Q+ + + T P Sbjct: 435 AKSSEMNILIPQ---DGDYREFPIPEQFKTAWDGSKLITEP 472
>CAP_DICDI (P54654) Adenylyl cyclase-associated protein (CAP)| Length = 464 Score = 38.1 bits (87), Expect = 0.011 Identities = 19/44 (43%), Positives = 25/44 (56%) Frame = -2 Query: 455 AKSSEMNVLVPSDETDGDWVEHPLPQQYIHFFKDGQFTTSPVSH 324 +KSSEMNVL+P + D VE +P+QY K + T SH Sbjct: 420 SKSSEMNVLIPGATENDDLVELAIPEQYKTSVKGNKLHTESTSH 463
>CAP1_RAT (Q08163) Adenylyl cyclase-associated protein 1 (CAP 1)| Length = 473 Score = 35.8 bits (81), Expect = 0.053 Identities = 18/46 (39%), Positives = 29/46 (63%) Frame = -2 Query: 455 AKSSEMNVLVPSDETDGDWVEHPLPQQYIHFFKDGQFTTSPVSHSG 318 AKSSEMNVL+P++ GD+ E P+P+Q+ + + T+ +G Sbjct: 430 AKSSEMNVLIPTE--GGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG 473
>CAP1_MOUSE (P40124) Adenylyl cyclase-associated protein 1 (CAP 1)| Length = 473 Score = 35.8 bits (81), Expect = 0.053 Identities = 18/46 (39%), Positives = 29/46 (63%) Frame = -2 Query: 455 AKSSEMNVLVPSDETDGDWVEHPLPQQYIHFFKDGQFTTSPVSHSG 318 AKSSEMNVL+P++ GD+ E P+P+Q+ + + T+ +G Sbjct: 430 AKSSEMNVLIPTE--GGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG 473
>CAP1_HUMAN (Q01518) Adenylyl cyclase-associated protein 1 (CAP 1)| Length = 474 Score = 35.8 bits (81), Expect = 0.053 Identities = 18/46 (39%), Positives = 29/46 (63%) Frame = -2 Query: 455 AKSSEMNVLVPSDETDGDWVEHPLPQQYIHFFKDGQFTTSPVSHSG 318 AKSSEMNVL+P++ GD+ E P+P+Q+ + + T+ +G Sbjct: 431 AKSSEMNVLIPTE--GGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG 474
>CAP2_RAT (P52481) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 477 Score = 35.4 bits (80), Expect = 0.069 Identities = 18/41 (43%), Positives = 25/41 (60%) Frame = -2 Query: 455 AKSSEMNVLVPSDETDGDWVEHPLPQQYIHFFKDGQFTTSP 333 AKSSEMNVLVP + D+ E P+P+Q+ + + T P Sbjct: 435 AKSSEMNVLVPQGD---DYREFPIPEQFKTIWDGSKLITEP 472
>CAP1_PIG (P40125) Adenylyl cyclase-associated protein 1 (CAP 1) (ASP-56| protein) (Fragments) Length = 233 Score = 33.9 bits (76), Expect = 0.20 Identities = 16/27 (59%), Positives = 22/27 (81%) Frame = -2 Query: 455 AKSSEMNVLVPSDETDGDWVEHPLPQQ 375 AKSSEMNVL+P++ GD+ E P+P+Q Sbjct: 200 AKSSEMNVLIPTE--GGDFNEFPVPEQ 224
>CAP_CHLVR (P40122) Adenylyl cyclase-associated protein (CAP)| Length = 481 Score = 33.5 bits (75), Expect = 0.26 Identities = 16/28 (57%), Positives = 21/28 (75%) Frame = -2 Query: 455 AKSSEMNVLVPSDETDGDWVEHPLPQQY 372 AKSSEMN+ V + DGD E+PLP+Q+ Sbjct: 436 AKSSEMNICVM--KPDGDLTEYPLPEQF 461
>THOC2_HUMAN (Q8NI27) THO complex subunit 2 (Tho2)| Length = 1478 Score = 32.3 bits (72), Expect = 0.58 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Frame = +2 Query: 188 KKSNKSYNNSQHTTISKKKTRQRQHRTN-KEPHKKRDILSDLFMRRNEKLGRW*TVRP*K 364 KK K+ + TT+ +++ Q R KEP ++RDI ++ + N K G V Sbjct: 1217 KKEEKAKDEKFKTTVPNAESKSTQEREREKEPSRERDIAKEMKSKENVKGGEKTPVSGSL 1276 Query: 365 NGCTAAAKDAPPSRHQSRR 421 + P R Q RR Sbjct: 1277 KSPVPRSDIPEPEREQKRR 1295
>ERF1_DROME (Q9VPH7) Eukaryotic peptide chain release factor subunit 1 (eRF1)| (Eukaryotic release factor 1) Length = 438 Score = 32.0 bits (71), Expect = 0.76 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Frame = +2 Query: 152 ETTICRQNLRLQKKSNKSYNNSQHTTI---SKKKTRQRQHRTNKEPHKKRDIL 301 ET IC +NL +Q+ K++ NS TT+ + ++ + + H T+KE + +++ Sbjct: 318 ETLICWENLDIQRYVLKNHANSTSTTVLHLTPEQEKDKSHFTDKESGVEMELI 370
>CYB_LEITA (P14548) Cytochrome b| Length = 371 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = -2 Query: 179 LGFACRLLFLLSFICPVCTAWPV--CFPCTWLVYLLFV 72 +GF+ + IC VC AW CF CT ++LF+ Sbjct: 32 VGFSLGFFICMQIICGVCLAWLFFSCFICTNWYFVLFL 69
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (Splicing regulatory protein 508) (SRrp508) Length = 508 Score = 30.0 bits (66), Expect = 2.9 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = +2 Query: 185 QKKSNKSYNNSQHTTISKKKTRQRQHRTNKEPHKKR 292 +K+S + + H ++ ++RQ+ R +K PHKKR Sbjct: 210 RKRSQSKHRSRSH---NRSRSRQKDRRRSKSPHKKR 242
>PPIG_HUMAN (Q13427) Peptidyl-prolyl cis-trans isomerase G (EC 5.2.1.8)| (Peptidyl-prolyl isomerase G) (PPIase G) (Rotamase G) (Cyclophilin G) (Clk-associating RS-cyclophilin) (CARS-cyclophilin) (CARS-Cyp) (SR-cyclophilin) (SRcyp) (SR-cyp) (CASP10) Length = 754 Score = 30.0 bits (66), Expect = 2.9 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 191 KSNKSYNNSQHTTISKKKTRQRQHRTNKEPHKK 289 +S+ ++S+ T K K R+++HR N HKK Sbjct: 211 QSSSDSSDSESATEEKSKKRKKKHRKNSRKHKK 243
>YOR6_TTV1 (P19281) Hypothetical 8.9 kDa protein| Length = 73 Score = 30.0 bits (66), Expect = 2.9 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -2 Query: 146 SFICPVCTAWPVCFPCTWLVYLLFV 72 S I P+CT W CT+ +YLL + Sbjct: 22 SMIRPICTIWTYSISCTYGIYLLIL 46
>CREC_EMENI (Q9P4R5) Catabolite repression protein creC| Length = 630 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = -2 Query: 449 SSEMNVLVPSDETDGDWVEHPLPQQYIHFFKDGQFTTSPVSH 324 S+ ++V++ S D W E P+ Q+Y K+G +SPV+H Sbjct: 253 SAHIDVIMGSSAGDIFWYE-PISQKYARINKNGIINSSPVTH 293
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 30.0 bits (66), Expect = 2.9 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = +2 Query: 185 QKKSNKSYNNSQHTTISKKKTRQRQHRTNKEPHKKR 292 +K+S + + H ++ ++RQ+ R +K PHKKR Sbjct: 213 RKRSQSKHRSRSH---NRSRSRQKDRRRSKSPHKKR 245
>CYB_TRYBB (P00164) Cytochrome b| Length = 363 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = -2 Query: 179 LGFACRLLFLLSFICPVCTAWPV--CFPCTWLVYLLFV 72 +GF+ L IC VC AW CF C+ ++LF+ Sbjct: 24 VGFSLGFFIALQIICGVCLAWLFFSCFICSNWYFVLFL 61
>SYPM_MOUSE (Q8CFI5) Probable prolyl-tRNA synthetase, mitochondrial precursor| (EC 6.1.1.15) (Proline--tRNA ligase) (ProRS) Length = 475 Score = 29.3 bits (64), Expect = 4.9 Identities = 16/62 (25%), Positives = 34/62 (54%) Frame = +2 Query: 23 IKRMISQTIQKLQFVGVQKVNIPTMCKENIQARPYTLGK*MTRETTICRQNLRLQKKSNK 202 +++++ Q++Q +G QK+N+P++ P L + +R + R+ LRL+ + K Sbjct: 98 VEKLVRVIDQEMQAIGGQKINMPSL-------SPAELWRATSRWDLMGRELLRLRDRHGK 150 Query: 203 SY 208 Y Sbjct: 151 EY 152
>ANGR_VIBAN (P19828) Protein angR| Length = 1048 Score = 28.9 bits (63), Expect = 6.4 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -2 Query: 407 GDWVEHPLPQQYIHFFKDGQF 345 GDW+ LPQ+Y ++ DGQF Sbjct: 720 GDWIGLDLPQRYRNYRVDGQF 740
>HELS_METJA (Q58524) Putative ski2-type helicase (EC 3.6.1.-) [Contains:| Endonuclease PI-MjaHel (EC 3.1.-.-) (Mja Hel intein) (Mja Pep3 intein)] Length = 1195 Score = 28.5 bits (62), Expect = 8.4 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 10/104 (9%) Frame = +2 Query: 17 HIIKRMISQTIQKLQFVGVQKVNIPTMCKENIQARPYTLGK*MTRETTIC--RQNLRLQK 190 +I + + + KL + NI C + Y + + I R+N+ Sbjct: 507 YIYSKKLRKIFNKLNMLTKDNKNIDAFCNLPLDKLAYLIAGLFDSDGYIYLNRKNIEFYS 566 Query: 191 KSNKSYNNSQ--------HTTISKKKTRQRQHRTNKEPHKKRDI 298 S K Q H++I KKKT+ TN + +K +DI Sbjct: 567 ISEKLVEQLQFVLLRFGIHSSIRKKKTKTMVSPTNGKEYKCKDI 610
>EP15R_MOUSE (Q60902) Epidermal growth factor receptor substrate 15-like 1| (Eps15-related protein) (Eps15R) (Epidermal growth factor receptor pathway substrate 15-related sequence) (Eps15-rs) Length = 907 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 4/95 (4%) Frame = +2 Query: 38 SQTIQKLQFVGVQKVNIPTMCKENIQARPYTLGK*MTRETTICRQNL----RLQKKSNKS 205 S T+ +F GV++++ + +Q Y+L + + + +Q LQ ++ Sbjct: 370 SSTLASGEFTGVKELDDISQEIAQLQREKYSLEQDIREKEEAIKQKTSEVQELQNDLDRE 429 Query: 206 YNNSQHTTISKKKTRQRQHRTNKEPHKKRDILSDL 310 ++ Q K+ + R +++ K RD+LSD+ Sbjct: 430 TSSLQELEAQKQDAQDRLDEMDQQKAKLRDMLSDV 464
>RNE_BUCAP (Q8K9J9) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 968 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/58 (27%), Positives = 29/58 (50%) Frame = +2 Query: 161 ICRQNLRLQKKSNKSYNNSQHTTISKKKTRQRQHRTNKEPHKKRDILSDLFMRRNEKL 334 I + ++L K N Y S + KT ++++ NK I SD+F+ +N+K+ Sbjct: 877 ISKLKVKLTSKKN-DYLISNQKKLFLNKTLKKENTKNKSSAPITKIFSDVFLSKNQKI 933 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,981,976 Number of Sequences: 219361 Number of extensions: 1231415 Number of successful extensions: 4238 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4080 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4222 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
