ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart24b04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT025056.1| Drosophila melanogaster IP16012 full insert cDNA Length = 1114 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 474 gtcgtcgtgctcctcctcgtcct 496 ||||||||||||||||||||||| Sbjct: 288 gtcgtcgtgctcctcctcgtcct 310
>ref|NM_170032.2| Drosophila melanogaster locomotion defects CG5248-RB, transcript variant B (loco), mRNA Length = 4000 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 474 gtcgtcgtgctcctcctcgtcct 496 ||||||||||||||||||||||| Sbjct: 879 gtcgtcgtgctcctcctcgtcct 857
>gb|AC008197.3|AC008197 Drosophila melanogaster, chromosome 3R, region 94B-94C, BAC clone BACR02L12, complete sequence Length = 178931 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 474 gtcgtcgtgctcctcctcgtcct 496 ||||||||||||||||||||||| Sbjct: 75284 gtcgtcgtgctcctcctcgtcct 75306
>gb|AF130744.1|AF130744 Drosophila melanogaster regulator of G-protein signalling LOCO C2 (loco) mRNA, complete cds Length = 4002 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 474 gtcgtcgtgctcctcctcgtcct 496 ||||||||||||||||||||||| Sbjct: 881 gtcgtcgtgctcctcctcgtcct 859
>gb|AE003739.3| Drosophila melanogaster chromosome 3R, section 77 of 118 of the complete sequence Length = 224856 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 474 gtcgtcgtgctcctcctcgtcct 496 ||||||||||||||||||||||| Sbjct: 208794 gtcgtcgtgctcctcctcgtcct 208816
>emb|X75673.1|PCGRP78G P.cinnamomi GRP78/BiP gene Length = 3859 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 469 tcgtggtcgtcgtgctcctcctcgtc 494 ||||||||||||| |||||||||||| Sbjct: 3614 tcgtggtcgtcgtcctcctcctcgtc 3589
>emb|X75672.1|PCGRP78 P.cinnamomi GRP78/BiP mRNA for glucose regulated protein/BiP Length = 1606 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 469 tcgtggtcgtcgtgctcctcctcgtc 494 ||||||||||||| |||||||||||| Sbjct: 1496 tcgtggtcgtcgtcctcctcctcgtc 1471
>gb|AC010110.7| Drosophila melanogaster 3L BAC RP98-9N2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172372 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 484 tcctcctcgtcctgctgctcgt 505 |||||||||||||||||||||| Sbjct: 115635 tcctcctcgtcctgctgctcgt 115614
>ref|NM_139488.2| Drosophila melanogaster CG1240-RA (CG1240), mRNA Length = 1330 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 484 tcctcctcgtcctgctgctcgt 505 |||||||||||||||||||||| Sbjct: 392 tcctcctcgtcctgctgctcgt 371
>gb|AY061488.1| Drosophila melanogaster LD45195 full length cDNA Length = 1321 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 484 tcctcctcgtcctgctgctcgt 505 |||||||||||||||||||||| Sbjct: 372 tcctcctcgtcctgctgctcgt 351
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 482 gctcctcctcgtcctgctgctc 503 |||||||||||||||||||||| Sbjct: 19660608 gctcctcctcgtcctgctgctc 19660587 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggcggcggccgccatggctg 216 |||||||||||||||||||| Sbjct: 34786769 ggcggcggccgccatggctg 34786750
>dbj|AK101501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C14, full insert sequence Length = 1854 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 482 gctcctcctcgtcctgctgctc 503 |||||||||||||||||||||| Sbjct: 390 gctcctcctcgtcctgctgctc 369
>gb|AE003476.3| Drosophila melanogaster chromosome 3L, section 10 of 83 of the complete sequence Length = 304419 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 484 tcctcctcgtcctgctgctcgt 505 |||||||||||||||||||||| Sbjct: 941 tcctcctcgtcctgctgctcgt 920
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 257 gttcttccacctcgtcgacctcgttctcgc 286 ||||||| ||||||||||||| |||||||| Sbjct: 2760563 gttcttcgacctcgtcgaccttgttctcgc 2760592
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 482 gctcctcctcgtcctgctgctc 503 |||||||||||||||||||||| Sbjct: 111334 gctcctcctcgtcctgctgctc 111313
>gb|AC102398.12| Mus musculus chromosome 8, clone RP24-213P1, complete sequence Length = 172457 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 463 tcctgctcgtggtcgtcgtgctcctcctcgtcctgctgctc 503 |||||||| || || || ||||||||||| ||||||||||| Sbjct: 13305 tcctgctcctgctcctcctgctcctcctcctcctgctgctc 13265
>ref|NM_188061.1| Oryza sativa (japonica cultivar-group), Ozsa8481 predicted mRNA Length = 270 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 457 tccttgtcctgctcgtggtcgtcgt 481 |||||||||||||||||||| |||| Sbjct: 182 tccttgtcctgctcgtggtcatcgt 206
>ref|NM_189691.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 cctgctcgtggtcgtcgtgct 484 ||||||||||||||||||||| Sbjct: 1056 cctgctcgtggtcgtcgtgct 1076
>ref|NM_189515.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 tgctcctcctcgtcctgctgc 501 ||||||||||||||||||||| Sbjct: 218 tgctcctcctcgtcctgctgc 198
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 catgcgcgtggtggtggtgga 310 ||||||||||||||||||||| Sbjct: 2074901 catgcgcgtggtggtggtgga 2074921
>gb|AC146610.4| Mus musculus BAC clone RP23-68E7 from chromosome 7, complete sequence Length = 218291 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 ggttcaggaggcccttgaacc 160 ||||||||||||||||||||| Sbjct: 52487 ggttcaggaggcccttgaacc 52467
>ref|XM_658358.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5846.2), mRNA Length = 1395 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 tcctcgtcctgctgctcgtgg 507 ||||||||||||||||||||| Sbjct: 734 tcctcgtcctgctgctcgtgg 714
>ref|NM_198371.1| Danio rerio zgc:63856 (zgc:63856), mRNA Length = 2260 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 gctcctcctcgtcctgctgct 502 ||||||||||||||||||||| Sbjct: 1791 gctcctcctcgtcctgctgct 1771
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 472 tggtcgtcgtgctcctcctcgtcct 496 |||||||| |||||||||||||||| Sbjct: 7878265 tggtcgtcctgctcctcctcgtcct 7878241
>gb|AC122523.5| Mus musculus BAC clone RP24-492N18 from chromosome 7, complete sequence Length = 163841 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 ggttcaggaggcccttgaacc 160 ||||||||||||||||||||| Sbjct: 131891 ggttcaggaggcccttgaacc 131871
>gb|BC053114.1| Danio rerio zgc:63856, mRNA (cDNA clone MGC:63856 IMAGE:6788957), complete cds Length = 2260 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 gctcctcctcgtcctgctgct 502 ||||||||||||||||||||| Sbjct: 1791 gctcctcctcgtcctgctgct 1771
>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13 Length = 347496 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 catgcgcgtggtggtggtgga 310 ||||||||||||||||||||| Sbjct: 346419 catgcgcgtggtggtggtgga 346439
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 catgcgcgtggtggtggtgga 310 ||||||||||||||||||||| Sbjct: 154028 catgcgcgtggtggtggtgga 154048
>gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, complete sequence Length = 167898 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 463 tcctgctcgtggtcgtcgtgctcctcctcgtcctgctgctc 503 |||||||| || || || ||||||||||| ||||||||||| Sbjct: 17129 tcctgctcctgctcctcctgctcctcctcctcctgctgctc 17169
>emb|BX510990.32| Zebrafish DNA sequence from clone CH211-67F13 in linkage group 13, complete sequence Length = 210138 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 400 tggcgaaaatggtggcggtggtgga 424 ||||||||||||||| ||||||||| Sbjct: 178482 tggcgaaaatggtgggggtggtgga 178506
>ref|XM_684462.1| PREDICTED: Danio rerio similar to KIAA1522 protein (LOC561062), mRNA Length = 4368 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 400 tggcgaaaatggtggcggtggtgga 424 ||||||||||||||| ||||||||| Sbjct: 2559 tggcgaaaatggtgggggtggtgga 2535
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 472 tggtcgtcgtgctcctcctcgtcct 496 |||||||| |||||||||||||||| Sbjct: 7876100 tggtcgtcctgctcctcctcgtcct 7876076
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 tgctcctcctcgtcctgctgc 501 ||||||||||||||||||||| Sbjct: 43209604 tgctcctcctcgtcctgctgc 43209584 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 457 tccttgtcctgctcgtggtcgtcgt 481 |||||||||||||||||||| |||| Sbjct: 9391921 tccttgtcctgctcgtggtcatcgt 9391897 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 cctgctcgtggtcgtcgtgct 484 ||||||||||||||||||||| Sbjct: 5016549 cctgctcgtggtcgtcgtgct 5016569
>gb|AC105068.19| Mus musculus chromosome 5, clone RP23-445H19, complete sequence Length = 199878 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 463 tcctgctcgtggtcgtcgtgctcctcctcgtcctgctgctc 503 |||||||| || || || ||||||||||| ||||||||||| Sbjct: 12870 tcctgctcctgctcctcctgctcctcctcctcctgctgctc 12830
>dbj|AP002537.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0001B06 Length = 140304 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 cctgctcgtggtcgtcgtgct 484 ||||||||||||||||||||| Sbjct: 9987 cctgctcgtggtcgtcgtgct 10007
>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030J04, complete sequence Length = 153431 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 472 tggtcgtcgtgctcctcctcgtcct 496 |||||||| |||||||||||||||| Sbjct: 63863 tggtcgtcctgctcctcctcgtcct 63839
>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0020E09 Length = 149195 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 tgctcctcctcgtcctgctgc 501 ||||||||||||||||||||| Sbjct: 97059 tgctcctcctcgtcctgctgc 97039
>ref|XM_224715.3| PREDICTED: Rattus norvegicus similar to mKIAA1623 protein (LOC306340), mRNA Length = 3324 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 468 ctcgtggtcgtcgtgctcctcctcgtcct 496 ||||| |||||||| |||||||||||||| Sbjct: 2355 ctcgtcgtcgtcgtcctcctcctcgtcct 2327
>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0693B08 Length = 140812 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 457 tccttgtcctgctcgtggtcgtcgt 481 |||||||||||||||||||| |||| Sbjct: 62248 tccttgtcctgctcgtggtcatcgt 62224
>dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0671B11 Length = 168372 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 cctgctcgtggtcgtcgtgct 484 ||||||||||||||||||||| Sbjct: 117002 cctgctcgtggtcgtcgtgct 117022
>dbj|AK121219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090G01, full insert sequence Length = 596 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 472 tggtcgtcgtgctcctcctcgtcct 496 |||||||| |||||||||||||||| Sbjct: 348 tggtcgtcctgctcctcctcgtcct 372
>dbj|AK120462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107I18, full insert sequence Length = 732 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 472 tggtcgtcgtgctcctcctcgtcct 496 |||||||| |||||||||||||||| Sbjct: 483 tggtcgtcctgctcctcctcgtcct 507
>dbj|AK107005.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D05, full insert sequence Length = 1886 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 cctgctcgtggtcgtcgtgct 484 ||||||||||||||||||||| Sbjct: 1087 cctgctcgtggtcgtcgtgct 1107
>dbj|AK099271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020E22, full insert sequence Length = 1412 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 cctgctcgtggtcgtcgtgct 484 ||||||||||||||||||||| Sbjct: 1116 cctgctcgtggtcgtcgtgct 1136
>dbj|AK069948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035M20, full insert sequence Length = 1509 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 cctgctcgtggtcgtcgtgct 484 ||||||||||||||||||||| Sbjct: 1180 cctgctcgtggtcgtcgtgct 1200
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 gattaaccaaagtaattaaac 89 ||||||||||||||||||||| Sbjct: 320411 gattaaccaaagtaattaaac 320391
>gb|AC138118.4| Mus musculus BAC clone RP24-219A21 from 8, complete sequence Length = 168752 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 463 tcctgctcgtggtcgtcgtgctcctcctcgtcctgctgctc 503 |||||||| || || || ||||||||||| ||||||||||| Sbjct: 163395 tcctgctcctgctcctcctgctcctcctcctcctgctgctc 163355
>dbj|AB028937.1| Gluconobacter oxydans gene for sorbitol dehydrogenase, complete cds Length = 4073 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 459 cttgtcctgctcgtggtcgtcgtgctcct 487 ||||||||| |||||||||||||| |||| Sbjct: 2077 cttgtcctgatcgtggtcgtcgtgatcct 2049
>ref|NM_001017003.2| Xenopus tropicalis hypothetical protein LOC549757 (LOC549757), mRNA Length = 1754 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 cagtacagggaacagattaa 74 |||||||||||||||||||| Sbjct: 533 cagtacagggaacagattaa 552
>gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, complete sequence Length = 268984 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 469 tcgtggtcgtcgtgctcctcctcgtcct 496 |||| |||||||| |||||||||||||| Sbjct: 180308 tcgtcgtcgtcgtcctcctcctcgtcct 180281
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0092N12, complete sequence Length = 109198 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 cgtcgtgctcctcctcgtcc 495 |||||||||||||||||||| Sbjct: 102934 cgtcgtgctcctcctcgtcc 102953
>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0004D06, complete sequence Length = 157547 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggcggcggccgccatggctg 216 |||||||||||||||||||| Sbjct: 29333 ggcggcggccgccatggctg 29314
>ref|XM_874176.1| PREDICTED: Bos taurus similar to heterogeneous nuclear ribonucleoprotein A3, transcript variant 8 (LOC506839), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 393 gtggtggtggcgaaaatggtggcggtggtgga 424 |||||||||| | | ||||||||||||||||| Sbjct: 732 gtggtggtggtggatatggtggcggtggtgga 763
>gb|AC123507.4| Rattus norvegicus 11 BAC CH230-18C5 (Children's Hospital Oakland Research Institute) complete sequence Length = 166073 Score = 40.1 bits (20), Expect = 6.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 457 tccttgtcctgctcgtggtcgtcgtgctcctcctcgtcct 496 |||||||||| ||||| ||||| | |||||||||||||| Sbjct: 31823 tccttgtcctcctcgtcctcgtcctcctcctcctcgtcct 31784
>ref|NM_028735.1| Mus musculus tetratricopeptide repeat domain 21A (ttc21a), mRNA Length = 4187 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ggaacagcttcatcttcagg 336 |||||||||||||||||||| Sbjct: 795 ggaacagcttcatcttcagg 776
>gb|AC124662.10| Mus musculus chromosome 9, clone RP24-409K22, complete sequence Length = 235471 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ggaacagcttcatcttcagg 336 |||||||||||||||||||| Sbjct: 36685 ggaacagcttcatcttcagg 36704
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 gcgccggccggcggtacgta 124 |||||||||||||||||||| Sbjct: 472526 gcgccggccggcggtacgta 472507
>ref|XM_750859.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g16175) partial mRNA Length = 1128 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 ctcctcctcgtcctgctgct 502 |||||||||||||||||||| Sbjct: 998 ctcctcctcgtcctgctgct 1017
>ref|XM_750860.1| Aspergillus fumigatus Af293 DNA-directed RNA polymerase III, 47 KD subunit (Afu2g16170) partial mRNA Length = 1821 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 ctcctcctcgtcctgctgct 502 |||||||||||||||||||| Sbjct: 55 ctcctcctcgtcctgctgct 36
>gb|AC117245.3| Mus musculus BAC clone RP24-233B16 from 9, complete sequence Length = 177775 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ggaacagcttcatcttcagg 336 |||||||||||||||||||| Sbjct: 153438 ggaacagcttcatcttcagg 153457
>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0076M06, complete sequence Length = 133581 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggcggcggccgccatggctg 216 |||||||||||||||||||| Sbjct: 129150 ggcggcggccgccatggctg 129131
>ref|XM_719606.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00481) partial mRNA Length = 984 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 tggtggcgaaaatggtggcg 416 |||||||||||||||||||| Sbjct: 363 tggtggcgaaaatggtggcg 382
>emb|CR383684.7| Zebrafish DNA sequence from clone DKEYP-69E1 in linkage group 3, complete sequence Length = 111124 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 agcttcatcttcaggccttc 341 |||||||||||||||||||| Sbjct: 42077 agcttcatcttcaggccttc 42058
>emb|AL139280.8| Human DNA sequence from clone RP11-195B3 on chromosome 10 Contains a novel gene, complete sequence Length = 45462 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tccttgtcctgccggtggcc 362 |||||||||||||||||||| Sbjct: 27304 tccttgtcctgccggtggcc 27323
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 cgtcgtgctcctcctcgtcc 495 |||||||||||||||||||| Sbjct: 899620 cgtcgtgctcctcctcgtcc 899601
>ref|XM_778071.1| PREDICTED: Strongylocentrotus purpuratus similar to Baculoviral IAP repeat-containing protein 6 (Ubiquitin-conjugating BIR-domain enzyme apollon) (LOC577866), mRNA Length = 15738 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 475 tcgtcgtgctcctcctcgtcctgc 498 ||||||| |||||||||||||||| Sbjct: 13936 tcgtcgtcctcctcctcgtcctgc 13959
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 ccttgtcctgccggtggccg 363 |||||||||||||||||||| Sbjct: 173188 ccttgtcctgccggtggccg 173207
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ccttgtcctgccggtggccg 363 |||||||||||||||||||| Sbjct: 64931 ccttgtcctgccggtggccg 64912
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 ccttgtcctgccggtggccg 363 |||||||||||||||||||| Sbjct: 48790 ccttgtcctgccggtggccg 48809
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggcggcggccgccatggctg 216 |||||||||||||||||||| Sbjct: 92328 ggcggcggccgccatggctg 92309
>ref|NM_204952.1| Gallus gallus forkhead box D2 (FOXD2), mRNA Length = 1708 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 469 tcgtggtcgtcgtgctcctcctcgtcct 496 |||| |||||||| |||||||||||||| Sbjct: 302 tcgtcgtcgtcgtcctcctcctcgtcct 275
>gb|AC091181.8| Homo sapiens chromosome 17, clone RP11-426D19, complete sequence Length = 155923 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gaaaatggtggcggtggtgg 423 |||||||||||||||||||| Sbjct: 72684 gaaaatggtggcggtggtgg 72703
>gb|AC023720.4| Drosophila melanogaster X BAC RP98-7F15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179205 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 gctcgtggtcgtcgtgctcctcct 490 |||||||| ||||||||||||||| Sbjct: 177306 gctcgtgggcgtcgtgctcctcct 177283
>gb|AC104605.7| Drosophila melanogaster X BAC RP98-11C13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167366 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 gctcgtggtcgtcgtgctcctcct 490 |||||||| ||||||||||||||| Sbjct: 34663 gctcgtgggcgtcgtgctcctcct 34640
>gb|AC098694.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1014H12, complete sequence Length = 129420 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 cgtcgtgctcctcctcgtcc 495 |||||||||||||||||||| Sbjct: 36562 cgtcgtgctcctcctcgtcc 36581
>tpg|BK003123.1| TPA: TPA_inf: Drosophila melanogaster HDC18571 (HDC18571) gene, complete cds Length = 539 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 394 tggtggtggcgaaaatggtggcggtggtggaaacgt 429 |||||||||||| |||||||||||||| |||||| Sbjct: 287 tggtggtggcgatgttggtggcggtggtgcaaacgt 322
>gb|AC023687.3| Drosophila melanogaster X BAC RP98-36C7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185848 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 394 tggtggtggcgaaaatggtggcggtggtggaaacgt 429 |||||||||||| |||||||||||||| |||||| Sbjct: 106784 tggtggtggcgatgttggtggcggtggtgcaaacgt 106749
>ref|NM_132046.2| Drosophila melanogaster CG3016-RA (CG3016), mRNA Length = 2486 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 gctcgtggtcgtcgtgctcctcct 490 |||||||| ||||||||||||||| Sbjct: 760 gctcgtgggcgtcgtgctcctcct 737
>dbj|AK133304.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932431P04 product:Hypothetical tetratricopeptide repeat homolog [Mus musculus], full insert sequence Length = 4042 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ggaacagcttcatcttcagg 336 |||||||||||||||||||| Sbjct: 763 ggaacagcttcatcttcagg 744
>gb|AY069649.1| Drosophila melanogaster LD41827 full length cDNA Length = 2314 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 gctcgtggtcgtcgtgctcctcct 490 |||||||| ||||||||||||||| Sbjct: 521 gctcgtgggcgtcgtgctcctcct 498
>dbj|AK163163.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730057N22 product:Hypothetical tetratricopeptide repeat homolog [Mus musculus], full insert sequence Length = 3328 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ggaacagcttcatcttcagg 336 |||||||||||||||||||| Sbjct: 644 ggaacagcttcatcttcagg 625
>ref|XM_683108.1| PREDICTED: Danio rerio similar to high-mobility group protein 2-like 1 isoform a (LOC559742), mRNA Length = 1887 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 agcttcatcttcaggccttc 341 |||||||||||||||||||| Sbjct: 662 agcttcatcttcaggccttc 643
>dbj|AK015017.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921538N17 product:hypothetical TPR repeat containing protein, full insert sequence Length = 4126 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ggaacagcttcatcttcagg 336 |||||||||||||||||||| Sbjct: 751 ggaacagcttcatcttcagg 732
>dbj|AK029952.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932410I19 product:hypothetical Tetratricopeptide repeat (TPR) structure containing protein, full insert sequence Length = 4187 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ggaacagcttcatcttcagg 336 |||||||||||||||||||| Sbjct: 795 ggaacagcttcatcttcagg 776
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggcggcggccgccatggctg 216 |||||||||||||||||||| Sbjct: 26327501 ggcggcggccgccatggctg 26327482
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 cgtcgtgctcctcctcgtcc 495 |||||||||||||||||||| Sbjct: 899620 cgtcgtgctcctcctcgtcc 899601
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 ctcctcctcgtcctgctgct 502 |||||||||||||||||||| Sbjct: 40848 ctcctcctcgtcctgctgct 40867
>gb|AE004672.1| Pseudomonas aeruginosa PAO1, section 233 of 529 of the complete genome Length = 10855 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 catgcgcgtggtggtggtgg 309 |||||||||||||||||||| Sbjct: 1125 catgcgcgtggtggtggtgg 1106
>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1147B12 Length = 127902 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 ctcctcctcgtcctgctgct 502 |||||||||||||||||||| Sbjct: 40848 ctcctcctcgtcctgctgct 40867
>dbj|AK120361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067O03, full insert sequence Length = 3399 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggcggcggccgccatggctg 216 |||||||||||||||||||| Sbjct: 135 ggcggcggccgccatggctg 116
>ref|XM_320495.2| Anopheles gambiae str. PEST ENSANGP00000015654 (ENSANGG00000006513), partial mRNA Length = 180 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 gctcctcctcgtcctgctgc 501 |||||||||||||||||||| Sbjct: 22 gctcctcctcgtcctgctgc 3
>ref|XM_313005.2| Anopheles gambiae str. PEST ENSANGP00000020427 (ENSANGG00000017938), partial mRNA Length = 573 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gaacagcttcatcttcaggc 337 |||||||||||||||||||| Sbjct: 78 gaacagcttcatcttcaggc 59
>dbj|AK107890.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E06, full insert sequence Length = 833 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggcggcggccgccatggctg 216 |||||||||||||||||||| Sbjct: 126 ggcggcggccgccatggctg 107
>dbj|AK106728.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H07, full insert sequence Length = 2386 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 ggcggcggccgccatggctg 216 |||||||||||||||||||| Sbjct: 2100 ggcggcggccgccatggctg 2119
>dbj|AK105350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A05, full insert sequence Length = 1300 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggcggcggccgccatggctg 216 |||||||||||||||||||| Sbjct: 57 ggcggcggccgccatggctg 38
>gb|AY105026.1| Zea mays PCO062519 mRNA sequence Length = 1503 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 131 tctagaatcggttcaggaggcccttgaaccag 162 ||||||| ||||||| ||||||||||| |||| Sbjct: 1086 tctagaaccggttcatgaggcccttgatccag 1055
>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete sequence Length = 110682 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggcggcggccgccatggctg 216 |||||||||||||||||||| Sbjct: 31971 ggcggcggccgccatggctg 31952
>emb|CR762314.2| Xenopus tropicalis finished cDNA, clone TGas109f05 Length = 1754 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 cagtacagggaacagattaa 74 |||||||||||||||||||| Sbjct: 533 cagtacagggaacagattaa 552
>gb|AE003488.3| Drosophila melanogaster chromosome X, section 40 of 74 of the complete sequence Length = 315134 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 394 tggtggtggcgaaaatggtggcggtggtggaaacgt 429 |||||||||||| |||||||||||||| |||||| Sbjct: 243354 tggtggtggcgatgttggtggcggtggtgcaaacgt 243389
>gb|AE003435.3| Drosophila melanogaster chromosome X, section 19 of 74 of the complete sequence Length = 290042 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 467 gctcgtggtcgtcgtgctcctcct 490 |||||||| ||||||||||||||| Sbjct: 251926 gctcgtgggcgtcgtgctcctcct 251949
>gb|U37272.1|GGU37272 Gallus gallus winged helix protein CWH-1 mRNA, complete cds Length = 1708 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 469 tcgtggtcgtcgtgctcctcctcgtcct 496 |||| |||||||| |||||||||||||| Sbjct: 302 tcgtcgtcgtcgtcctcctcctcgtcct 275
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 Length = 407339 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 393 gtggtggtggcgaaaatggtggcggtggtgga 424 |||||||||||| | ||||||| ||||||||| Sbjct: 198938 gtggtggtggcggagatggtggtggtggtgga 198969
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 gtggtggtggtggaaacgtcggaa 320 ||||||||||||||||| |||||| Sbjct: 490189 gtggtggtggtggaaacttcggaa 490166
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 cgtcgtgctcctcctcgtcc 495 |||||||||||||||||||| Sbjct: 899617 cgtcgtgctcctcctcgtcc 899598
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggcggcggccgccatggctg 216 |||||||||||||||||||| Sbjct: 26641759 ggcggcggccgccatggctg 26641740
>emb|CT027681.7| Mouse DNA sequence from clone RP24-330H24 on chromosome 16, complete sequence Length = 190475 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cctcgccaagcttcctagcc 255 |||||||||||||||||||| Sbjct: 20391 cctcgccaagcttcctagcc 20372
>dbj|AP006685.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45M12, TM0378b, complete sequence Length = 86433 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 393 gtggtggtggcgaaaatggtggcggtgg 420 ||||||||||||| |||| ||||||||| Sbjct: 62825 gtggtggtggcgataatgatggcggtgg 62798
>emb|AL663048.12| Mouse DNA sequence from clone RP23-166N12 on chromosome X, complete sequence Length = 234817 Score = 40.1 bits (20), Expect = 6.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 457 tccttgtcctgctcgtggtcgtcgtgctcctcctcgtcct 496 |||||||||| ||| | ||| |||| |||||||||||||| Sbjct: 86203 tccttgtcctcctccttgtcctcgtcctcctcctcgtcct 86164 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,032,571 Number of Sequences: 3902068 Number of extensions: 4032571 Number of successful extensions: 98191 Number of sequences better than 10.0: 108 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97029 Number of HSP's gapped (non-prelim): 1161 length of query: 511 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 488 effective length of database: 17,143,297,704 effective search space: 8365929279552 effective search space used: 8365929279552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
