ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart24b03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1579 Score = 109 bits (55), Expect = 7e-21 Identities = 115/135 (85%) Strand = Plus / Minus Query: 259 gtggcgcacgttggaaagctcgtccaccgagtcgccccgctcgaagacggccgccgcgcc 318 |||||||||||| || | | ||| |||||||| |||||||| || || || || || || Sbjct: 1468 gtggcgcacgtttgagaattggtcgaccgagtcaccccgctcaaacacagctgctgcccc 1409 Query: 319 catgccggatccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggctt 378 |||||| ||||| ||||||||||| || || |||||||||||||||||||||||| |||| Sbjct: 1408 catgccagatccaatgcacatggtgacaacaccgaatctgcagtccctgccccggcgctt 1349 Query: 379 catttcgttcagaag 393 |||||| |||||||| Sbjct: 1348 catttcattcagaag 1334
>ref|XM_507050.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.17 patrial mRNA Length = 1582 Score = 109 bits (55), Expect = 7e-21 Identities = 115/135 (85%) Strand = Plus / Minus Query: 259 gtggcgcacgttggaaagctcgtccaccgagtcgccccgctcgaagacggccgccgcgcc 318 |||||||||||| || | | ||| |||||||| |||||||| || || || || || || Sbjct: 1471 gtggcgcacgtttgagaattggtcgaccgagtcaccccgctcaaacacagctgctgcccc 1412 Query: 319 catgccggatccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggctt 378 |||||| ||||| ||||||||||| || || |||||||||||||||||||||||| |||| Sbjct: 1411 catgccagatccaatgcacatggtgacaacaccgaatctgcagtccctgccccggcgctt 1352 Query: 379 catttcgttcagaag 393 |||||| |||||||| Sbjct: 1351 catttcattcagaag 1337
>dbj|AK061948.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E07, full insert sequence Length = 1803 Score = 109 bits (55), Expect = 7e-21 Identities = 115/135 (85%) Strand = Plus / Minus Query: 259 gtggcgcacgttggaaagctcgtccaccgagtcgccccgctcgaagacggccgccgcgcc 318 |||||||||||| || | | ||| |||||||| |||||||| || || || || || || Sbjct: 1466 gtggcgcacgtttgagaattggtcgaccgagtcaccccgctcaaacacagctgctgcccc 1407 Query: 319 catgccggatccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggctt 378 |||||| ||||| ||||||||||| || || |||||||||||||||||||||||| |||| Sbjct: 1406 catgccagatccaatgcacatggtgacaacaccgaatctgcagtccctgccccggcgctt 1347 Query: 379 catttcgttcagaag 393 |||||| |||||||| Sbjct: 1346 catttcattcagaag 1332
>gb|AY224469.1| Oryza sativa (japonica cultivar-group) isolate 24733 3-ketoacyl-CoA thiolase-like protein mRNA, complete cds Length = 1347 Score = 109 bits (55), Expect = 7e-21 Identities = 115/135 (85%) Strand = Plus / Minus Query: 259 gtggcgcacgttggaaagctcgtccaccgagtcgccccgctcgaagacggccgccgcgcc 318 |||||||||||| || | | ||| |||||||| |||||||| || || || || || || Sbjct: 1341 gtggcgcacgtttgagaattggtcgaccgagtcaccccgctcaaacacagctgctgcccc 1282 Query: 319 catgccggatccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggctt 378 |||||| ||||| ||||||||||| || || |||||||||||||||||||||||| |||| Sbjct: 1281 catgccagatccaatgcacatggtgacaacaccgaatctgcagtccctgccccggcgctt 1222 Query: 379 catttcgttcagaag 393 |||||| |||||||| Sbjct: 1221 catttcattcagaag 1207
>dbj|AK069768.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030K20, full insert sequence Length = 2045 Score = 97.6 bits (49), Expect = 3e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 317 cccatgccggatccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggc 376 |||||||| ||||| ||||||||||| || || |||||||||||||||||||||||| || Sbjct: 1413 cccatgccagatccaatgcacatggtgacaacaccgaatctgcagtccctgccccggcgc 1354 Query: 377 ttcatttcgttcagaag 393 |||||||| |||||||| Sbjct: 1353 ttcatttcattcagaag 1337
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 83.8 bits (42), Expect = 4e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 332 atgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttcaga 391 ||||||||||| || || |||||||||||||||||||||||| |||||||||| |||||| Sbjct: 35100140 atgcacatggtgacaacaccgaatctgcagtccctgccccggcgcttcatttcattcaga 35100199 Query: 392 ag 393 || Sbjct: 35100200 ag 35100201
>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643F09 Length = 161001 Score = 83.8 bits (42), Expect = 4e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 332 atgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttcaga 391 ||||||||||| || || |||||||||||||||||||||||| |||||||||| |||||| Sbjct: 160481 atgcacatggtgacaacaccgaatctgcagtccctgccccggcgcttcatttcattcaga 160540 Query: 392 ag 393 || Sbjct: 160541 ag 160542
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 83.8 bits (42), Expect = 4e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 332 atgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttcaga 391 ||||||||||| || || |||||||||||||||||||||||| |||||||||| |||||| Sbjct: 73303 atgcacatggtgacaacaccgaatctgcagtccctgccccggcgcttcatttcattcaga 73362 Query: 392 ag 393 || Sbjct: 73363 ag 73364
>gb|BT017030.1| Zea mays clone EL01N0202B07.c mRNA sequence Length = 839 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 281 tccaccgagtcgccccgctcgaagacggccgccgcgcccatgccggatccgatgcacatg 340 ||||||| ||| ||||||||||| || || || || ||||| || |||||||| |||||| Sbjct: 630 tccaccgcgtctccccgctcgaacacagctgctgcccccattccagatccgatacacatg 571 Query: 341 gtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttcagaag 393 || || || || ||||||||||| ||||||||| |||||||||| || ||||| Sbjct: 570 gtgacaacaccaaatctgcagtctctgccccggcgcttcatttcatttagaag 518
>gb|BT018838.1| Zea mays clone EL01N0552G11.d mRNA sequence Length = 1681 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 281 tccaccgagtcgccccgctcgaagacggccgccgcgcccatgccggatccgatgcacatg 340 ||||||| ||| ||||||||||| || || || || ||||| || |||||||| |||||| Sbjct: 1420 tccaccgcgtctccccgctcgaacacagctgctgcccccattccagatccgatacacatg 1361 Query: 341 gtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttcagaag 393 || || || || ||||||||||| ||||||||| |||||||||| || ||||| Sbjct: 1360 gtgacaacaccaaatctgcagtctctgccccggcgcttcatttcatttagaag 1308
>gb|AY103539.1| Zea mays PCO103478 mRNA sequence Length = 2010 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 281 tccaccgagtcgccccgctcgaagacggccgccgcgcccatgccggatccgatgcacatg 340 ||||||| ||| ||||||||||| || || || || ||||| || |||||||| |||||| Sbjct: 1637 tccaccgcgtctccccgctcgaacacagctgctgcccccattccagatccgatacacatg 1578 Query: 341 gtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttcagaag 393 || || || || ||||||||||| ||||||||| |||||||||| || ||||| Sbjct: 1577 gtgacaacaccaaatctgcagtctctgccccggcgcttcatttcatttagaag 1525
>gb|DQ207713.1| Zea mays cultivar inbred line Mo17 IDP460 marker Length = 562 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 216 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 157 Query: 389 agaag 393 ||||| Sbjct: 156 agaag 152
>gb|DQ207712.1| Zea mays cultivar B73 IDP460 marker Length = 689 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 271 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 212 Query: 389 agaag 393 ||||| Sbjct: 211 agaag 207
>gb|AF498487.1| Zea mays cultivar C_9 acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 412 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 347 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 406 Query: 389 agaag 393 ||||| Sbjct: 407 agaag 411
>gb|AF498484.1| Zea mays cultivar F_1 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 412 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 347 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 406 Query: 389 agaag 393 ||||| Sbjct: 407 agaag 411
>gb|AF498483.1| Zea mays cultivar Mo17 acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 412 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 347 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 406 Query: 389 agaag 393 ||||| Sbjct: 407 agaag 411
>gb|AF498481.1| Zea mays cultivar Wf9Ht acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 412 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 347 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 406 Query: 389 agaag 393 ||||| Sbjct: 407 agaag 411
>gb|AF498480.1| Zea mays cultivar B84 acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 411 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 346 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 405 Query: 389 agaag 393 ||||| Sbjct: 406 agaag 410
>gb|AF498478.1| Zea mays cultivar DE811 acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 411 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 346 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 405 Query: 389 agaag 393 ||||| Sbjct: 406 agaag 410
>gb|AF498476.1| Zea mays cultivar D71-4HT acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 469 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 404 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 463 Query: 389 agaag 393 ||||| Sbjct: 464 agaag 468
>gb|AF498475.1| Zea mays cultivar H99 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 407 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 342 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 401 Query: 389 agaag 393 ||||| Sbjct: 402 agaag 406
>gb|AF498474.1| Zea mays cultivar IVANA acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 473 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 408 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 467 Query: 389 agaag 393 ||||| Sbjct: 468 agaag 472
>gb|AF498473.1| Zea mays cultivar CO109 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 407 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 342 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 401 Query: 389 agaag 393 ||||| Sbjct: 402 agaag 406
>gb|AF498471.1| Zea mays cultivar F_2 acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 410 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 345 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 404 Query: 389 agaag 393 ||||| Sbjct: 405 agaag 409
>gb|AF498470.1| Zea mays cultivar G_1 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 410 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 345 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 404 Query: 389 agaag 393 ||||| Sbjct: 405 agaag 409
>gb|AF498468.1| Zea mays cultivar H_4 acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 410 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 345 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 404 Query: 389 agaag 393 ||||| Sbjct: 405 agaag 409
>gb|AF498467.1| Zea mays cultivar F_4 acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 403 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 338 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 397 Query: 389 agaag 393 ||||| Sbjct: 398 agaag 402
>gb|AF498466.1| Zea mays cultivar F_3 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 407 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 342 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 401 Query: 389 agaag 393 ||||| Sbjct: 402 agaag 406
>gb|AF498465.1| Zea mays cultivar F_5 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 410 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 345 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 404 Query: 389 agaag 393 ||||| Sbjct: 405 agaag 409
>gb|AF498464.1| Zea mays cultivar H_5 acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 410 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 345 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 404 Query: 389 agaag 393 ||||| Sbjct: 405 agaag 409
>gb|AF498462.1| Zea mays cultivar J40 acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 410 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 345 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 404 Query: 389 agaag 393 ||||| Sbjct: 405 agaag 409
>gb|AF498461.1| Zea mays cultivar 647 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 410 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 345 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 404 Query: 389 agaag 393 ||||| Sbjct: 405 agaag 409
>gb|AF498460.1| Zea mays cultivar B_1 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 410 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 345 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 404 Query: 389 agaag 393 ||||| Sbjct: 405 agaag 409
>gb|AF498459.1| Zea mays cultivar F_6 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 410 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 345 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 404 Query: 389 agaag 393 ||||| Sbjct: 405 agaag 409
>gb|AF498458.1| Zea mays cultivar C_5 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 407 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 342 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 401 Query: 389 agaag 393 ||||| Sbjct: 402 agaag 406
>gb|AF498457.1| Zea mays cultivar H_1 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 407 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 342 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 401 Query: 389 agaag 393 ||||| Sbjct: 402 agaag 406
>gb|AF323027.1| Zea mays transposon Acrobat, complete sequence; putative gloyoxysomal beta-ketoacyl-thiolase gene, partial sequence Length = 484 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| || Sbjct: 408 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttcattt 467 Query: 389 agaag 393 ||||| Sbjct: 468 agaag 472
>gb|AF498486.1| Zea mays cultivar D_9 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 470 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttc 384 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| Sbjct: 410 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttc 465
>gb|AF498485.1| Zea mays cultivar D_6 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 470 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttc 384 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| Sbjct: 410 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttc 465
>gb|AF498482.1| Zea mays cultivar D_7 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 470 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttc 384 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| Sbjct: 410 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttc 465
>gb|AF498477.1| Zea mays cultivar 684 acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 464 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttc 384 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| Sbjct: 404 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttc 459
>gb|AF498472.1| Zea mays cultivar B73 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 468 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttc 384 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| Sbjct: 408 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttc 463
>gb|AF498469.1| Zea mays cultivar B_6 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 464 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttc 384 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| Sbjct: 404 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttc 459
>gb|AF498463.1| Zea mays cultivar H_3 acetyl-CoA C-acyltransferase-like protein gene, 3' UTR and partial cds Length = 468 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttc 384 ||||| |||||||| || || || ||||||||||| ||||||||| |||||||||| Sbjct: 408 ccgatacacatggtgacaacaccaaatctgcagtctctgccccggcgcttcatttc 463
>gb|AE012302.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 210 of 460 of the complete genome Length = 12828 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 309 ccgccgcgcccatgccggatccgatgcacatggt 342 |||||||||||||||||| |||||||||||||| Sbjct: 8326 ccgccgcgcccatgccggtgccgatgcacatggt 8359
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 309 ccgccgcgcccatgccggatccgatgcacatggt 342 |||||||||||||||||| |||||||||||||| Sbjct: 2656679 ccgccgcgcccatgccggtgccgatgcacatggt 2656646
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 298 ctcgaagacggccgccgcgcccatgccggatccgatgcacatggt 342 |||||||| | | |||||||||||||||| |||||||||||||| Sbjct: 144678 ctcgaagatgccggccgcgcccatgccggtgccgatgcacatggt 144722
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 298 ctcgaagacggccgccgcgcccatgccggatccgatgcacatggt 342 |||||||| | | |||||||||||||||| |||||||||||||| Sbjct: 55663 ctcgaagatgccggccgcgcccatgccggtgccgatgcacatggt 55707
>gb|AF498479.1| Zea mays cultivar H60 acetyl-CoA C-acyltransferase-like protein-like protein gene, 3' UTR and partial cds Length = 411 Score = 50.1 bits (25), Expect = 0.005 Identities = 55/65 (84%) Strand = Plus / Plus Query: 329 ccgatgcacatggtcacgaccccgaatctgcagtccctgccccggggcttcatttcgttc 388 ||||| |||||||| || || || ||||||||||| ||||| ||| |||||||||| || Sbjct: 346 ccgatacacatggtgacaacaccaaatctgcagtctctgcctcggcgcttcatttcattt 405 Query: 389 agaag 393 ||||| Sbjct: 406 agaag 410
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 48.1 bits (24), Expect = 0.022 Identities = 30/32 (93%) Strand = Plus / Minus Query: 311 gccgcgcccatgccggatccgatgcacatggt 342 |||||||||||||||| |||||||||||||| Sbjct: 2662239 gccgcgcccatgccggtgccgatgcacatggt 2662208 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 cggccgccgcgcccatgccg 325 |||||||||||||||||||| Sbjct: 2905345 cggccgccgcgcccatgccg 2905364
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 48.1 bits (24), Expect = 0.022 Identities = 30/32 (93%) Strand = Plus / Minus Query: 311 gccgcgcccatgccggatccgatgcacatggt 342 |||||||||||||||| |||||||||||||| Sbjct: 2682764 gccgcgcccatgccggtgccgatgcacatggt 2682733 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 cggccgccgcgcccatgccg 325 |||||||||||||||||||| Sbjct: 2927071 cggccgccgcgcccatgccg 2927090
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 46.1 bits (23), Expect = 0.086 Identities = 44/51 (86%) Strand = Plus / Minus Query: 295 ccgctcgaagacggccgccgcgcccatgccggatccgatgcacatggtcac 345 |||||||| || | |||||||||||||||||| |||| |||||| ||||| Sbjct: 647525 ccgctcgatgatgcccgccgcgcccatgccggtgccgacgcacatcgtcac 647475
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Plus Query: 311 gccgcgcccatgccggatccgatgcacatggtcac 345 |||||||||||||||| ||||||||||| ||||| Sbjct: 2945204 gccgcgcccatgccggtgccgatgcacatcgtcac 2945238
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 296 cgctcgaagacggccgccgcgcccatgccggatccgatgcacatggtcac 345 ||||||| || | |||||||||||||||||| |||| |||||| ||||| Sbjct: 215144 cgctcgatgatgcccgccgcgcccatgccggtgccgacgcacatcgtcac 215095
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 296 cgctcgaagacggccgccgcgcccatgccggatccgatgcacatggtcac 345 ||||||| || | |||||||||||||||||| |||| |||||| ||||| Sbjct: 897433 cgctcgatgatgcccgccgcgcccatgccggtgccgacgcacatcgtcac 897384
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 296 cgctcgaagacggccgccgcgcccatgccggatccgatgcacatggtcac 345 ||||||| || | |||||||||||||||||| |||| |||||| ||||| Sbjct: 739816 cgctcgatgatgcccgccgcgcccatgccggtgccgacgcacatcgtcac 739767
>gb|AE011836.1| Xanthomonas axonopodis pv. citri str. 306, section 214 of 469 of the complete genome Length = 10879 Score = 44.1 bits (22), Expect = 0.34 Identities = 31/34 (91%) Strand = Plus / Plus Query: 309 ccgccgcgcccatgccggatccgatgcacatggt 342 |||| ||||||||||||| |||||||||||||| Sbjct: 9586 ccgcagcgcccatgccggtcccgatgcacatggt 9619
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 296 cgctcgaagacggccgccgcgcccatgccggatccgatgcacatggtcac 345 |||||||| | | |||||||||||||||||| |||| |||||| ||||| Sbjct: 510978 cgctcgaaaatgcccgccgcgcccatgccggtgccgacgcacatcgtcac 510929 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 ccgatgcacatggtcacgacc 349 ||||||||||||||||||||| Sbjct: 1888327 ccgatgcacatggtcacgacc 1888307
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.34 Identities = 31/34 (91%) Strand = Plus / Minus Query: 309 ccgccgcgcccatgccggatccgatgcacatggt 342 ||||||||||||||||| |||||||||||||| Sbjct: 2478579 ccgccgcgcccatgccgccgccgatgcacatggt 2478546 Score = 40.1 bits (20), Expect = 5.3 Identities = 35/40 (87%) Strand = Plus / Minus Query: 309 ccgccgcgcccatgccggatccgatgcacatggtcacgac 348 ||||||||||||||||| || | ||||||||||||||| Sbjct: 1430485 ccgccgcgcccatgccgccgcccacgcacatggtcacgac 1430446
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 314 gcgcccatgccggatccgatgcacatggt 342 ||||||||||||| |||||||||||||| Sbjct: 2351908 gcgcccatgccggtaccgatgcacatggt 2351936
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 ctgcagtccctgccccggggc 376 ||||||||||||||||||||| Sbjct: 268976 ctgcagtccctgccccggggc 268996
>emb|CR956367.12| Pig DNA sequence from clone PigE-122C21 on chromosome 17, complete sequence Length = 124577 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 tgcagtccctgccccggggct 377 ||||||||||||||||||||| Sbjct: 51469 tgcagtccctgccccggggct 51489
>gb|AC118200.8| Mus musculus chromosome 5, clone RP23-330E5, complete sequence Length = 208710 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ggatgatctatacctgagga 194 |||||||||||||||||||| Sbjct: 201222 ggatgatctatacctgagga 201203
>gb|BC072964.1| Xenopus laevis MGC82503 protein, mRNA (cDNA clone MGC:82503 IMAGE:4963068), complete cds Length = 1841 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 ttgcctggaaaaattattcttctg 135 ||||||||||| |||||||||||| Sbjct: 1439 ttgcctggaaacattattcttctg 1416
>ref|XM_365693.1| Magnaporthe grisea 70-15 hypothetical protein (MG02395.4) partial mRNA Length = 6021 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 aagttgtgcgactggatgtg 261 |||||||||||||||||||| Sbjct: 4337 aagttgtgcgactggatgtg 4356
>gb|AC140404.3| Mus musculus BAC clone RP23-146B9 from chromosome 5, complete sequence Length = 163710 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ggatgatctatacctgagga 194 |||||||||||||||||||| Sbjct: 47704 ggatgatctatacctgagga 47685
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.3 Identities = 44/52 (84%) Strand = Plus / Plus Query: 294 cccgctcgaagacggccgccgcgcccatgccggatccgatgcacatggtcac 345 |||||||||| || |||| ||||||||||||| |||| |||||| ||||| Sbjct: 1361518 cccgctcgaacactcccgctgcgcccatgccggtgccgacgcacatcgtcac 1361569
>emb|BX470098.15| Zebrafish DNA sequence from clone DKEY-148D16 in linkage group 12, complete sequence Length = 249826 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 catattttattcagaacaaa 37 |||||||||||||||||||| Sbjct: 55426 catattttattcagaacaaa 55445
>gb|AF022450.1|OACFTRO4 Ovis aries cystic fibrosis transmembrane conductance regulator (CFTR) gene, exon 9 Length = 435 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ttcttgcctggaaaaattat 128 |||||||||||||||||||| Sbjct: 103 ttcttgcctggaaaaattat 122
>gb|AC026305.20| Homo sapiens 3 BAC RP11-91A15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104150 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tccttttttatcccccacga 90 |||||||||||||||||||| Sbjct: 38049 tccttttttatcccccacga 38068 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,737,118 Number of Sequences: 3902068 Number of extensions: 2737118 Number of successful extensions: 48952 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48223 Number of HSP's gapped (non-prelim): 717 length of query: 396 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 374 effective length of database: 17,147,199,772 effective search space: 6413052714728 effective search space used: 6413052714728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
