ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart24b01 |
|---|---|
| Clone Library Name | barley_pub |
>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic| protein 2a) (PIP2a) (OsPIP2.1) Length = 290 Score = 45.4 bits (106), Expect = 3e-05 Identities = 21/21 (100%), Positives = 21/21 (100%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRSNA 327 YHQYILRAGAIKALGSFRSNA Sbjct: 270 YHQYILRAGAIKALGSFRSNA 290
>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)| (Salt stress-induced major intrinsic protein) Length = 280 Score = 43.1 bits (100), Expect = 2e-04 Identities = 20/21 (95%), Positives = 20/21 (95%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRSNA 327 YHQYILRA AIKALGSFRSNA Sbjct: 258 YHQYILRASAIKALGSFRSNA 278
>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic| protein 2.6) (OsPIP2.6) Length = 282 Score = 41.6 bits (96), Expect = 5e-04 Identities = 19/20 (95%), Positives = 19/20 (95%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRSN 330 YHQYILRA AIKALGSFRSN Sbjct: 260 YHQYILRAAAIKALGSFRSN 279
>PIP1_ATRCA (P42767) Aquaporin PIP-type| Length = 282 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/20 (90%), Positives = 19/20 (95%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRSN 330 YHQY+LRA AIKALGSFRSN Sbjct: 260 YHQYVLRAAAIKALGSFRSN 279
>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic| protein 2d) (PIP2d) Length = 286 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/19 (89%), Positives = 19/19 (100%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRS 333 YHQ++LRAGAIKALGSFRS Sbjct: 264 YHQFVLRAGAIKALGSFRS 282
>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic| protein 3b) (PIP3b) Length = 278 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/20 (90%), Positives = 18/20 (90%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRSN 330 YHQYILRA AIKAL SFRSN Sbjct: 256 YHQYILRAAAIKALASFRSN 275
>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic| protein 2.4) Length = 291 Score = 35.0 bits (79), Expect = 0.043 Identities = 16/19 (84%), Positives = 17/19 (89%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRS 333 YHQ+ILRA AIKALGSF S Sbjct: 265 YHQFILRAAAIKALGSFGS 283
>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic| protein 2e) (PIP2e) Length = 289 Score = 33.9 bits (76), Expect = 0.097 Identities = 14/19 (73%), Positives = 17/19 (89%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRS 333 YHQ++LRAGA+KA GS RS Sbjct: 264 YHQFVLRAGAMKAYGSVRS 282
>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic| protein 2.2) (OsPIP2.2) Length = 288 Score = 33.5 bits (75), Expect = 0.13 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRSNA 327 YHQY+LRA A K LGS+RSNA Sbjct: 269 YHQYVLRASAAK-LGSYRSNA 288
>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)| (PIP2a) Length = 287 Score = 33.1 bits (74), Expect = 0.17 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRSNA 327 YHQ++LRA K+LGSFRS A Sbjct: 265 YHQFVLRASGSKSLGSFRSAA 285
>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)| (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced tonoplast intrinsic protein) (WSI-TIP) Length = 285 Score = 33.1 bits (74), Expect = 0.17 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRSNA 327 YHQ++LRA K+LGSFRS A Sbjct: 263 YHQFVLRASGSKSLGSFRSAA 283
>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)| (PIP2b) (TMP2b) Length = 285 Score = 33.1 bits (74), Expect = 0.17 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRSNA 327 YHQ++LRA K+LGSFRS A Sbjct: 263 YHQFVLRASGSKSLGSFRSAA 283
>Q300_MOUSE (Q02722) Protein Q300| Length = 77 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -2 Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSC 87 Y+CV C+CVC C + +S G+L S + C Sbjct: 26 YVCVCVCVCVCVCVCTLTCMCKSGGNLGCSSSGAIHC 62
>NU5M_ANOAR (P51899) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) (Fragment) Length = 384 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -2 Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63 ++C GS I S IR MGSL + P + SCFN+A + + Sbjct: 313 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 353
>NU5M_LOCMI (Q36428) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 572 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = -2 Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63 ++C GS I S IR MGS++ P + CFN++++C+ Sbjct: 307 FMCAGSMIHNLRDS----QDIRFMGSIIHFMPLTSICFNVSSLCL 347
>NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 580 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -2 Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63 ++C GS I S IR MGSL + P + SCFN+A + + Sbjct: 313 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 353
>NU5M_ANOQU (P33510) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 576 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -2 Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63 ++C GS I S IR MGSL + P + SCFN+A + + Sbjct: 309 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 349
>ATC3_SCHPO (P22189) Calcium-transporting ATPase 3 (EC 3.6.3.8)| Length = 1037 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%) Frame = +1 Query: 22 GLMIWIEGGDVGSIIHM------VAKLKQEKECGLIKT-SDPMDRITTHGTHDWAHTHMQ 180 G WIEGG + +II + + + K EK ++T + PM +T D +H+ Sbjct: 80 GTTDWIEGGVISAIIVLNITVGFIQEYKAEKTMDSLRTLASPMAHVTRSSKTDAIDSHLL 139 Query: 181 LP 186 +P Sbjct: 140 VP 141
>FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Delta-12 desaturase) Length = 383 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 221 SWPLQWSCYLCVGSCICVCAQSC 153 +WPL W+C CV + I V A C Sbjct: 85 AWPLYWACQGCVLTGIWVIAHEC 107
>FPRB_MYCTU (P65528) Probable ferredoxin/ferredoxin--NADP reductase (EC| 1.18.1.2) (FNR) Length = 575 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -2 Query: 320 VIHVMCMQD*SNGDLC---CVHPSKEKAAFATSRQ-FSWPLQWSCYLCVGSCICVCAQSC 153 VI C D S C C+HP+ ++ FATS + P+ +C C G+C+ C S Sbjct: 4 VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60 Query: 152 V 150 + Sbjct: 61 I 61
>FPRB_MYCBO (P65529) Probable ferredoxin/ferredoxin--NADP reductase (EC| 1.18.1.2) (FNR) Length = 575 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -2 Query: 320 VIHVMCMQD*SNGDLC---CVHPSKEKAAFATSRQ-FSWPLQWSCYLCVGSCICVCAQSC 153 VI C D S C C+HP+ ++ FATS + P+ +C C G+C+ C S Sbjct: 4 VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60 Query: 152 V 150 + Sbjct: 61 I 61
>VHUB_METVO (Q00388) Polyferredoxin protein vhuB| Length = 398 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = -2 Query: 203 SCYLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATIC 66 +C LC CA +C ++ + G L+ S C N AT C Sbjct: 33 TCTLCFS-----CASACPTGALVENNGKLIYNSSKCIKCGNCATAC 73
>HDA3_ASHGO (Q758V8) HDA1 complex subunit 3 (Histone deacetylase complex 1| subunit 3) Length = 637 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Frame = -1 Query: 366 RRHQGPRLLQEQRVTSYPCDVHARLKQWRPVLCPSIQRESR----FCNFSTVQLAAAMV- 202 RRH G + +Q+ T Y C H L +++R++R C TV A + Sbjct: 158 RRHDGQSIKTKQKKTRYACTCH--LVPSEAAKAIALERDTRLGLVICVDPTVDTRAPHIQ 215 Query: 201 -VLFMCRQLHMRMCPVMRAVCCNSV 130 +L ++ + R P +R NS+ Sbjct: 216 SILAQQQRKYGRTVPTIRVAVINSI 240
>SCNNG_HUMAN (P51170) Amiloride-sensitive sodium channel gamma-subunit| (Epithelial Na+ channel gamma subunit) (Gamma ENaC) (Nonvoltage-gated sodium channel 1 gamma subunit) (SCNEG) (Gamma NaCH) Length = 649 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Frame = +1 Query: 64 IHMVAKLKQEKECGLIKTSDPMDRITTHGTH----DWAHTHMQLPTHK*HDHCSGQLNCR 231 +H + K ++CG + S P+ + + +W + + QL H+ +L C+ Sbjct: 395 LHSCFQTKMVEKCGCAQYSQPLPPAANYCNYQQHPNWMYCYYQL--HR--AFVQEELGCQ 450 Query: 232 EVAKAAFSLDGWT 270 V K A S WT Sbjct: 451 SVCKEACSFKEWT 463
>HEPC1_SALSA (Q801Y3) Hepcidin-1 precursor| Length = 86 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1 Query: 186 RQLHMRMCPVMRAVCCNSVHGIAC 115 RQ+H+ +C +CCN H I C Sbjct: 61 RQIHLSLC----GLCCNCCHNIGC 80
>PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane intrinsic| protein 2.7) (OsPIP2.7) Length = 290 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -2 Query: 389 YHQYILRAGAIKALGSFRSNA 327 YH+ +LR A KAL SFRS + Sbjct: 267 YHKLVLRGEAAKALSSFRSTS 287
>MDL1_CANAL (P97998) ATP-dependent permease MDL1| Length = 685 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = +3 Query: 210 QRPTELSRSCKSGFLFGWMDTAQVAIASILHAHHMDNSLRVAPEGAEGLDGA 365 Q P S + K LFG D I + L+ + N +R P+G + GA Sbjct: 523 QEPLLFSGTIKENILFGKEDATDEEINNALNLSYASNFVRHLPDGLDTKIGA 574
>CT059_HUMAN (Q9BYT1) Putative transporter C20orf59| Length = 436 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -2 Query: 263 PSKEKAAFATSRQFSWP--LQWSCYLCVGSCICVCAQSCVP-CVVIRS 129 P + + A Q+S P W+ L +G+C+ CA+S +P C V S Sbjct: 5 PDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMS 52
>ZN524_MOUSE (Q9D0B1) Zinc finger protein 524| Length = 321 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -1 Query: 312 CDVHARLKQWRPVLCPSIQRES 247 C++HA L+ +R VLCP RE+ Sbjct: 156 CNIHAGLRPFRCVLCPRRFREA 177
>MURF_BACSU (P96613) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase| (EC 6.3.2.10) (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) Length = 457 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +1 Query: 10 LLLGGLMIWIEGGDVGSIIHMVAKLKQEKECGLIKTSDPMDRITTHG 150 L+LG ++ E GD+ H KECG + + D +DR+ T+G Sbjct: 357 LVLGDML---ELGDLEETFH--------KECGAVISPDKIDRVFTYG 392 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,229,128 Number of Sequences: 219361 Number of extensions: 1025231 Number of successful extensions: 2775 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2767 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
