ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrins... 434 e-119
2gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, comp... 113 4e-22
3ref|NM_187092.2| Oryza sativa (japonica cultivar-group), mRNA 105 1e-19
4ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group... 105 1e-19
5ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group... 105 1e-19
6gb|BT016583.1| Zea mays clone Contig416 mRNA sequence 105 1e-19
7gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds 105 1e-19
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
9dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA ... 105 1e-19
10dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
11dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
12dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
13dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
14dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
15gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein... 98 3e-17
16gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein... 98 3e-17
17dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
18gb|AY109332.1| Zea mays CL502_5 mRNA sequence 98 3e-17
19ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
20emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4,... 50 0.005
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
22dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
23dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
24dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
25gb|AY903443.1| Astragalus membranaceus clone AM79 putative plasm... 48 0.021
26dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
27gb|AE000657.1| Aquifex aeolicus VF5, complete genome 42 1.3
28ref|NM_187081.2| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
29gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, compl... 40 5.2
30emb|BX545848.23| Zebrafish DNA sequence from clone DKEY-8O19 in ... 40 5.2
31gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, comp... 40 5.2
32emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on ch... 40 5.2
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
34gb|AF154641.1| Nicotiana tabacum clone PR16 mRNA sequence 40 5.2
35dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
36dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
37dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
38dbj|AK072632.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
39emb|BX248523.8| Zebrafish DNA sequence from clone CH211-257G8 in... 40 5.2
40gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 5.2
41dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 5.2
42dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.2 
>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA,
            complete cds
          Length = 1283

 Score =  434 bits (219), Expect = e-119
 Identities = 355/394 (90%), Gaps = 16/394 (4%)
 Strand = Plus / Minus

                                                                        
Query: 12   cttgcttggcggattgatgatttggatagaa-ggtggcgacgttgggtcgatcatacata 70
            ||||||||| |||||||||| || ||||||| |||||||||||||| |||||||||||||
Sbjct: 1273 cttgcttggtggattgatgacttagatagaaaggtggcgacgttggatcgatcatacata 1214

                                                                        
Query: 71   tggtcgctaaattaaaaca------ggaaaaggaatgcgggctaattaagacaagcgatc 124
            ||||||||||||| ||| |      ||||||| |||||||||||||||||||||||||||
Sbjct: 1213 tggtcgctaaatttaaatacaagtaggaaaagcaatgcgggctaattaagacaagcgatc 1154

                                                                        
Query: 125  ccatggaccgaattacaacacacggcacgcatgactgggc-acatac---gcatatgcag 180
            |||||||||||||||||| |||||||||||||||| || | || |||   ||||||||||
Sbjct: 1153 ccatggaccgaattacaagacacggcacgcatgaccggaccacgtactacgcatatgcag 1094

                                                                        
Query: 181  ctgccgacacataaataacacgaccattgcagcggcc-aactgaactgtcgagaagttgc 239
            |||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 1093 ctgccgacacataa-taacacgaccattgcggcggccgaactgaactgtcgagaagttgc 1035

                                                                        
Query: 240  aaaagcggctttctctttggatggatggacacagcacaggtcgccattgcttcaatcttg 299
            |||||||  ||||||| |||||||||||||||| ||| |||||||||||||||| |||||
Sbjct: 1034 aaaagcgcatttctctctggatggatggacacaacacgggtcgccattgcttcagtcttg 975

                                                                        
Query: 300  catgcacatcacatggat---aactcgttacgcgttgctcctgaaggagccgagggcctt 356
            ||| || || ||||||||   |||| ||||||||||||||||||||||||||||||||||
Sbjct: 974  catacagatgacatggatgataacttgttacgcgttgctcctgaaggagccgagggcctt 915

                                              
Query: 357  gatggcgccggccctgagtatgtactggtggtag 390
            |||||||||||||||||| |||||||||||||||
Sbjct: 914  gatggcgccggccctgaggatgtactggtggtag 881
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>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds
          Length = 1328

 Score =  113 bits (57), Expect = 4e-22
 Identities = 63/65 (96%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 968 acgcgttgctcctgaaggagccgagggccttgatggcgccggcccggaggatgtactggt 909

                
Query: 386 ggtag 390
           |||||
Sbjct: 908 ggtag 904
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>ref|NM_187092.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1242

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919

                
Query: 386 ggtag 390
           |||||
Sbjct: 918 ggtag 914
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>ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117
           mRNA
          Length = 1257

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 980 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 921

                
Query: 386 ggtag 390
           |||||
Sbjct: 920 ggtag 916
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>ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117
           mRNA
          Length = 1298

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 922

                
Query: 386 ggtag 390
           |||||
Sbjct: 921 ggtag 917
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>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence
          Length = 1348

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 924 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggt 865

                
Query: 386 ggtag 390
           |||||
Sbjct: 864 ggtag 860
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>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds
          Length = 1133

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 872 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggt 813

                
Query: 386 ggtag 390
           |||||
Sbjct: 812 ggtag 808
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                            
Query: 326      acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
                |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 15355852 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 15355793

                     
Query: 386      ggtag 390
                |||||
Sbjct: 15355792 ggtag 15355788



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 325      tacgcgttgctcctgaaggagccg 348
                ||||||||||||| ||||||||||
Sbjct: 15306551 tacgcgttgctccggaaggagccg 15306528
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>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel
           protein, partial cds
          Length = 880

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           |||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct: 544 acgcgttgctcctgaaggagccgagggccttgatggggccggcccggaggatgtactggt 485

                
Query: 386 ggtag 390
           |||||
Sbjct: 484 ggtag 480
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>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1047_A06
          Length = 111673

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                         
Query: 326   acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
             |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 62851 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 62792

                  
Query: 386   ggtag 390
             |||||
Sbjct: 62791 ggtag 62787



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 325   tacgcgttgctcctgaaggagccg 348
             ||||||||||||| ||||||||||
Sbjct: 13550 tacgcgttgctccggaaggagccg 13527
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>dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H04, full
           insert sequence
          Length = 1216

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919

                
Query: 386 ggtag 390
           |||||
Sbjct: 918 ggtag 914
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>dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G02, full
           insert sequence
          Length = 1451

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 572 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 513

                
Query: 386 ggtag 390
           |||||
Sbjct: 512 ggtag 508
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>dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B05, full
           insert sequence
          Length = 1242

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919

                
Query: 386 ggtag 390
           |||||
Sbjct: 918 ggtag 914
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>dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K12, full
           insert sequence
          Length = 1298

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 922

                
Query: 386 ggtag 390
           |||||
Sbjct: 921 ggtag 917
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>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete
           cds
          Length = 1268

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           ||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||
Sbjct: 996 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggt 937

                
Query: 386 ggtag 390
           |||||
Sbjct: 936 ggtag 932
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>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete
           cds
          Length = 1171

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           ||||||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||
Sbjct: 943 acgcgttgctcctgaaggagccgagggccttgatggccccagcccggaggatgtactggt 884

                
Query: 386 ggtag 390
           |||||
Sbjct: 883 ggtag 879
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>dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G03, full
           insert sequence
          Length = 1257

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Minus

                                                                       
Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
           ||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 980 acgcgttgctcctgagggagccgagggctttgatggcgccggcccggaggatgtactggt 921

                
Query: 386 ggtag 390
           |||||
Sbjct: 920 ggtag 916
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>gb|AY109332.1| Zea mays CL502_5 mRNA sequence
          Length = 1969

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Minus

                                                                        
Query: 326  acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385
            ||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||
Sbjct: 1646 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggt 1587

                 
Query: 386  ggtag 390
            |||||
Sbjct: 1586 ggtag 1582
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>ref|XM_475029.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 849

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 330 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386
           |||||||| ||||||||| || |||||||||||  | |||| ||| |||||||||||
Sbjct: 837 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 781
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>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06,
             complete sequence
          Length = 127420

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 330   gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386
             |||||||| ||||||||| || |||||||||||  | |||| ||| |||||||||||
Sbjct: 91012 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 91068
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                        
Query: 330     gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386
               |||||||| ||||||||| || |||||||||||  | |||| ||| |||||||||||
Sbjct: 8906703 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 8906759
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>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full
           insert sequence
          Length = 1308

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 330 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386
           |||||||| ||||||||| || |||||||||||  | |||| ||| |||||||||||
Sbjct: 936 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 880
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>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full
           insert sequence
          Length = 1309

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 330 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386
           |||||||| ||||||||| || |||||||||||  | |||| ||| |||||||||||
Sbjct: 930 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 874
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>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full
           insert sequence
          Length = 1296

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 330 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386
           |||||||| ||||||||| || |||||||||||  | |||| ||| |||||||||||
Sbjct: 924 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 868
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>gb|AY903443.1| Astragalus membranaceus clone AM79 putative plasma membrane
           intrinsic protein mRNA, complete cds
          Length = 1120

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 331 ttgctcctgaaggagccgagggccttgatggc 362
           |||||||||||||| ||||| |||||||||||
Sbjct: 839 ttgctcctgaaggatccgagagccttgatggc 808
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>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full
           insert sequence
          Length = 1067

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 332 tgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386
           |||||| ||||||||| || |||||||||||  | |||| ||| |||||||||||
Sbjct: 821 tgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 767
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>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 79     aaattaaaacaggaaaaggaa 99
              |||||||||||||||||||||
Sbjct: 624952 aaattaaaacaggaaaaggaa 624932
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>ref|NM_187081.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1215

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 tacgcgttgctcctgaaggagccg 348
           ||||||||||||| ||||||||||
Sbjct: 954 tacgcgttgctccggaaggagccg 931
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>gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, complete sequence
          Length = 199569

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    ttaaaacaggaaaaggaatg 101
             ||||||||||||||||||||
Sbjct: 92945 ttaaaacaggaaaaggaatg 92926
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>emb|BX545848.23| Zebrafish DNA sequence from clone DKEY-8O19 in linkage group 20 Contains
              the gene for a novel protein (zgc:63746), the gene for a
              novel protein (zgc:55614), the gene for the 5' end of a
              novel protein similar to mouse and human cyclin-dependent
              kinase (CDC2-like) 11 (CDK11), the gene for a novel protein
              similar to vertebrate mitogen-activated protein kinase
              kinase kinase 5 (MAP3K5), a novel gene and eleven CpG
              islands, complete sequence
          Length = 199986

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     gctaaattaaaacaggaaaa 95
              ||||||||||||||||||||
Sbjct: 129625 gctaaattaaaacaggaaaa 129606
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>gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, complete sequence
          Length = 157375

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     ttaaaacaggaaaaggaatg 101
              ||||||||||||||||||||
Sbjct: 143776 ttaaaacaggaaaaggaatg 143795
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>emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on chromosome 11 Contains the
             3' end of the Ulk2 gene for Unc-51 like kinase 2 (C.
             elegans), the Prpsap2 gene for phosphoribosyl
             pyrophosphate synthetase-associated protein 2, the gene
             for a novel sodium/glucose cotransporter protein, the gene
             for a novel protein (2310040C09Rik), the Grap gene for
             GRB2-related adaptor protein and a CpG island, complete
             sequence
          Length = 186359

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   tttctctttggatggatgga 268
             ||||||||||||||||||||
Sbjct: 79799 tttctctttggatggatgga 79818
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     aaattaaaacaggaaaagga 98
              ||||||||||||||||||||
Sbjct: 751943 aaattaaaacaggaaaagga 751962
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>gb|AF154641.1| Nicotiana tabacum clone PR16 mRNA sequence
          Length = 1100

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                       
Query: 331 ttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtggtag 390
           |||||||||||||| || || || |||||||| || || | ||| ||| |||||||||||
Sbjct: 900 ttgctcctgaaggaaccaagagctttgatggcaccagcacggaggatgaactggtggtag 841
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>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0036E06
          Length = 137926

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    aaattaaaacaggaaaagga 98
             ||||||||||||||||||||
Sbjct: 30074 aaattaaaacaggaaaagga 30093
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>dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0475E07
          Length = 139961

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 325   tacgcgttgctcctgaaggagccg 348
             ||||||||||||| ||||||||||
Sbjct: 92564 tacgcgttgctccggaaggagccg 92541
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>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1399_H05
          Length = 147670

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     aaattaaaacaggaaaagga 98
              ||||||||||||||||||||
Sbjct: 108838 aaattaaaacaggaaaagga 108857
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>dbj|AK072632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132K03, full
           insert sequence
          Length = 1215

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 tacgcgttgctcctgaaggagccg 348
           ||||||||||||| ||||||||||
Sbjct: 954 tacgcgttgctccggaaggagccg 931
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>emb|BX248523.8| Zebrafish DNA sequence from clone CH211-257G8 in linkage group 20,
             complete sequence
          Length = 169849

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    gctaaattaaaacaggaaaa 95
             ||||||||||||||||||||
Sbjct: 35269 gctaaattaaaacaggaaaa 35288
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 69      tatggtcgctaaattaaaac 88
               ||||||||||||||||||||
Sbjct: 4757676 tatggtcgctaaattaaaac 4757657
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 69      tatggtcgctaaattaaaac 88
               ||||||||||||||||||||
Sbjct: 4688695 tatggtcgctaaattaaaac 4688676
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>dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1448A5
          Length = 178420

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     ttaaaacaggaaaaggaatg 101
              ||||||||||||||||||||
Sbjct: 145388 ttaaaacaggaaaaggaatg 145407


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,275,420
Number of Sequences: 3902068
Number of extensions: 3275420
Number of successful extensions: 54253
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54095
Number of HSP's gapped (non-prelim): 155
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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