ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018941.1| Zea mays clone Contig87.F mRNA sequence 167 3e-38
2dbj|AK103977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
3dbj|AK068862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
5dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
6dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
7ref|NM_125047.2| Arabidopsis thaliana MIOX5 AT5G56640 (MIOX5) mR... 70 6e-09
8gb|AY084627.1| Arabidopsis thaliana clone 113619 mRNA, complete ... 70 6e-09
9ref|NM_118759.2| Arabidopsis thaliana MIOX4 AT4G26260 (MIOX4) mR... 62 1e-06
10gb|BT012056.1| Arabidopsis thaliana At4g26260 mRNA sequence 62 1e-06
11gb|AY232552.1| Arabidopsis thaliana myo-inositol oxygenase (miox... 62 1e-06
12gb|AY142501.1| Arabidopsis thaliana unknown protein (At4g26260) ... 62 1e-06
13emb|BX829716.1|CNS0A1JE Arabidopsis thaliana Full-length cDNA Co... 62 1e-06
14ref|NM_101319.2| Arabidopsis thaliana MIOX1 (MYO-INISITOL OXYGEN... 44 0.33
15gb|BT000187.1| Arabidopsis thaliana unknown protein (At1g14520) ... 44 0.33
16gb|AY136388.1| Arabidopsis thaliana unknown protein (At1g14520) ... 44 0.33
17dbj|AK221931.1| Arabidopsis thaliana mRNA for hypothetical prote... 44 0.33
18emb|BX818200.1|CNS0ADVO Arabidopsis thaliana Full-length cDNA Co... 44 0.33
19emb|BX813739.1|CNS0ADML Arabidopsis thaliana Full-length cDNA Co... 44 0.33
20gb|AC010657.3|AC010657 Genomic sequence for Arabidopsis thaliana... 44 0.33
21dbj|AK176690.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 44 0.33
22dbj|AK175833.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 44 0.33
23dbj|AK175818.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 44 0.33
24dbj|AK175115.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 44 0.33
25gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis tha... 44 0.33
26dbj|AK118307.1| Arabidopsis thaliana At1g14520 mRNA for unknown ... 44 0.33
27ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) ... 42 1.3
28dbj|AK131337.1| Homo sapiens cDNA FLJ16351 fis, clone TESTI20390... 42 1.3
29gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, comple... 42 1.3
30ref|XM_936265.1| PREDICTED: Homo sapiens similar to Maltase-gluc... 42 1.3
31dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.3
32gb|U66059.1| Human germline T-cell receptor beta chain Dopamine-... 42 1.3
33ref|XM_849756.1| PREDICTED: Canis familiaris similar to phosphat... 40 5.1
34gb|AC122930.4| Mus musculus BAC clone RP23-13L19 from chromosome... 40 5.1
35gb|AC122453.4| Mus musculus BAC clone RP24-258A18 from chromosom... 40 5.1
36gb|AC126280.4| Mus musculus BAC clone RP23-10P23 from 16, comple... 40 5.1
37gb|AC163720.2| Mus musculus BAC clone RP23-424C5 from chromosome... 40 5.1
38dbj|AK039210.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 40 5.1
39dbj|AK045146.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 40 5.1
40ref|NM_065859.3| Caenorhabditis elegans F01F1.7 (F01F1.7) mRNA, ... 40 5.1
41dbj|AK018345.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 5.1
42gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosom... 40 5.1
43emb|AL358292.4|CNS05TDZ Human chromosome 14 DNA sequence BAC R-7... 40 5.1
44gb|AC005968.1|AC005968 Homo sapiens chromosome 18, clone hRPK.24... 40 5.1
45emb|CT573094.2| CH250-64B17, complete sequence 40 5.1
46gb|U13070.1| Caenorhabditis elegans cosmid F01F1, complete sequence 40 5.1
47emb|CT009704.12| Mouse DNA sequence from clone RP23-115B21 on ch... 40 5.1
48emb|AL928924.12| Mouse DNA sequence from clone RP23-307E15 on ch... 40 5.1
49dbj|AP007296.1| Lotus japonicus genomic DNA, clone:LjT02J24, TM0... 40 5.1
50dbj|AP006690.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 5.1
51dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.1
52emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chr... 40 5.1 
>gb|BT018941.1| Zea mays clone Contig87.F mRNA sequence
          Length = 783

 Score =  167 bits (84), Expect = 3e-38
 Identities = 132/148 (89%)
 Strand = Plus / Plus

                                                                       
Query: 233 ctcaccatttcagcttctccgggaagtacttctcgatgagcgacatgtagtagggcttca 292
           |||||||| | |||||  ||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 151 ctcaccatcttagcttggccgggaagtacttgtcgattagggacatgtagtagggcttca 210

                                                                       
Query: 293 ctttctcgacgtcgatcctgacactgctcttgctgtacaggtcatacttgttgaacacgt 352
           | | ||| ||||||||||||    |||||||||||||||||||||||||||||||||| |
Sbjct: 211 cctcctccacgtcgatcctgctgttgctcttgctgtacaggtcatacttgttgaacacat 270

                                       
Query: 353 gcagccatttgaggttctccttgtcctc 380
           ||||||| ||||||||||||||||||||
Sbjct: 271 gcagccacttgaggttctccttgtcctc 298
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>dbj|AK103977.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G02, full
            insert sequence
          Length = 1288

 Score =  157 bits (79), Expect = 3e-35
 Identities = 130/147 (88%)
 Strand = Plus / Minus

                                                                        
Query: 234  tcaccatttcagcttctccgggaagtacttctcgatgagcgacatgtagtagggcttcac 293
            ||||||| ||| |||  ||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct: 1109 tcaccatctcaacttggccgggaaatacttttcgatgagtgacatgtagtagggcttcac 1050

                                                                        
Query: 294  tttctcgacgtcgatcctgacactgctcttgctgtacaggtcatacttgttgaacacgtg 353
             ||||| ||||| |||||  || ||||||||||||||||||| || |||||||||||  |
Sbjct: 1049 cttctcaacgtctatcctctcattgctcttgctgtacaggtcgtatttgttgaacacacg 990

                                       
Query: 354  cagccatttgaggttctccttgtcctc 380
            |||||||||||||||||||||||||||
Sbjct: 989  cagccatttgaggttctccttgtcctc 963
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>dbj|AK068862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169F14, full
            insert sequence
          Length = 1289

 Score =  157 bits (79), Expect = 3e-35
 Identities = 130/147 (88%)
 Strand = Plus / Minus

                                                                        
Query: 234  tcaccatttcagcttctccgggaagtacttctcgatgagcgacatgtagtagggcttcac 293
            ||||||| ||| |||  ||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct: 1110 tcaccatctcaacttggccgggaaatacttttcgatgagtgacatgtagtagggcttcac 1051

                                                                        
Query: 294  tttctcgacgtcgatcctgacactgctcttgctgtacaggtcatacttgttgaacacgtg 353
             ||||| ||||| |||||  || ||||||||||||||||||| || |||||||||||  |
Sbjct: 1050 cttctcaacgtctatcctctcattgctcttgctgtacaggtcgtatttgttgaacacacg 991

                                       
Query: 354  cagccatttgaggttctccttgtcctc 380
            |||||||||||||||||||||||||||
Sbjct: 990  cagccatttgaggttctccttgtcctc 964
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                            
Query: 265      tcgatgagcgacatgtagtagggcttcactttctcgacgtcgatcctgacactgctcttg 324
                |||||||| |||||||||||||||||||| ||||| ||||| |||||  || ||||||||
Sbjct: 21134249 tcgatgagtgacatgtagtagggcttcaccttctcaacgtctatcctctcattgctcttg 21134190

                           
Query: 325      ctgtacaggtc 335
                |||||||||||
Sbjct: 21134189 ctgtacaggtc 21134179



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 343      ttgaacacgtgcagccatttgaggttctccttgtcctc 380
                ||||||||  ||||||||||||||||||||||||||||
Sbjct: 21134090 ttgaacacacgcagccatttgaggttctccttgtcctc 21134053
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>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0456F09
          Length = 141336

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                         
Query: 265   tcgatgagcgacatgtagtagggcttcactttctcgacgtcgatcctgacactgctcttg 324
             |||||||| |||||||||||||||||||| ||||| ||||| |||||  || ||||||||
Sbjct: 32910 tcgatgagtgacatgtagtagggcttcaccttctcaacgtctatcctctcattgctcttg 32851

                        
Query: 325   ctgtacaggtc 335
             |||||||||||
Sbjct: 32850 ctgtacaggtc 32840



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 343   ttgaacacgtgcagccatttgaggttctccttgtcctc 380
             ||||||||  ||||||||||||||||||||||||||||
Sbjct: 32751 ttgaacacacgcagccatttgaggttctccttgtcctc 32714
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>dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528E12
          Length = 139750

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                          
Query: 265    tcgatgagcgacatgtagtagggcttcactttctcgacgtcgatcctgacactgctcttg 324
              |||||||| |||||||||||||||||||| ||||| ||||| |||||  || ||||||||
Sbjct: 131250 tcgatgagtgacatgtagtagggcttcaccttctcaacgtctatcctctcattgctcttg 131191

                         
Query: 325    ctgtacaggtc 335
              |||||||||||
Sbjct: 131190 ctgtacaggtc 131180



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 343    ttgaacacgtgcagccatttgaggttctccttgtcctc 380
              ||||||||  ||||||||||||||||||||||||||||
Sbjct: 131091 ttgaacacacgcagccatttgaggttctccttgtcctc 131054
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>ref|NM_125047.2| Arabidopsis thaliana MIOX5 AT5G56640 (MIOX5) mRNA, complete cds
          Length = 1155

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 112/135 (82%), Gaps = 2/135 (1%)
 Strand = Plus / Minus

                                                                       
Query: 250 tccgggaagtacttctcgatgagcgacatgtagtagggcttcactttctcgacgtcgatc 309
           |||||||| || |||| ||| || ||||||||||| ||||| || |||||||| | || |
Sbjct: 934 tccgggaaatatttcttgataagagacatgtagtacggcttaaccttctcgacattga-c 876

                                                                       
Query: 310 ctg-acactgctcttgctgtacaggtcatacttgttgaacacgtgcagccatttgaggtt 368
            || ||  ||||||||||||| | |||||||||||| || || || ||||||||||| ||
Sbjct: 875 gtgtactttgctcttgctgtataagtcatacttgttaaaaacatgaagccatttgagatt 816

                          
Query: 369 ctccttgtcctcctc 383
           ||||||||| |||||
Sbjct: 815 ctccttgtcttcctc 801
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>gb|AY084627.1| Arabidopsis thaliana clone 113619 mRNA, complete sequence
          Length = 1227

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 112/135 (82%), Gaps = 2/135 (1%)
 Strand = Plus / Minus

                                                                        
Query: 250  tccgggaagtacttctcgatgagcgacatgtagtagggcttcactttctcgacgtcgatc 309
            |||||||| || |||| ||| || ||||||||||| ||||| || |||||||| | || |
Sbjct: 1006 tccgggaaatatttcttgataagagacatgtagtacggcttaaccttctcgacattga-c 948

                                                                        
Query: 310  ctg-acactgctcttgctgtacaggtcatacttgttgaacacgtgcagccatttgaggtt 368
             || ||  ||||||||||||| | |||||||||||| || || || ||||||||||| ||
Sbjct: 947  gtgtactttgctcttgctgtataagtcatacttgttaaaaacatgaagccatttgagatt 888

                           
Query: 369  ctccttgtcctcctc 383
            ||||||||| |||||
Sbjct: 887  ctccttgtcttcctc 873
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>ref|NM_118759.2| Arabidopsis thaliana MIOX4 AT4G26260 (MIOX4) mRNA, complete cds
          Length = 985

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 317 tgctcttgctgtacaggtcatacttgttgaacacgtgcagccatttgaggttctccttgt 376
           ||||||| ||||||| ||| ||||||||||| ||||| ||||| || || ||||||||||
Sbjct: 871 tgctcttactgtacaagtcgtacttgttgaaaacgtgtagccacttcagattctccttgt 812

                  
Query: 377 cctcctc 383
           | |||||
Sbjct: 811 cttcctc 805
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>gb|BT012056.1| Arabidopsis thaliana At4g26260 mRNA sequence
          Length = 951

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 317 tgctcttgctgtacaggtcatacttgttgaacacgtgcagccatttgaggttctccttgt 376
           ||||||| ||||||| ||| ||||||||||| ||||| ||||| || || ||||||||||
Sbjct: 868 tgctcttactgtacaagtcgtacttgttgaaaacgtgtagccacttcagattctccttgt 809

                  
Query: 377 cctcctc 383
           | |||||
Sbjct: 808 cttcctc 802
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>gb|AY232552.1| Arabidopsis thaliana myo-inositol oxygenase (miox4) mRNA, complete
           cds
          Length = 954

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 317 tgctcttgctgtacaggtcatacttgttgaacacgtgcagccatttgaggttctccttgt 376
           ||||||| ||||||| ||| ||||||||||| ||||| ||||| || || ||||||||||
Sbjct: 871 tgctcttactgtacaagtcgtacttgttgaaaacgtgtagccacttcagattctccttgt 812

                  
Query: 377 cctcctc 383
           | |||||
Sbjct: 811 cttcctc 805
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>gb|AY142501.1| Arabidopsis thaliana unknown protein (At4g26260) mRNA, complete cds
          Length = 985

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 317 tgctcttgctgtacaggtcatacttgttgaacacgtgcagccatttgaggttctccttgt 376
           ||||||| ||||||| ||| ||||||||||| ||||| ||||| || || ||||||||||
Sbjct: 871 tgctcttactgtacaagtcgtacttgttgaaaacgtgtagccacttcagattctccttgt 812

                  
Query: 377 cctcctc 383
           | |||||
Sbjct: 811 cttcctc 805
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>emb|BX829716.1|CNS0A1JE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB30ZG08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1143

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 317 tgctcttgctgtacaggtcatacttgttgaacacgtgcagccatttgaggttctccttgt 376
           ||||||||||||| | || ||||||||| || || || ||||||||||| ||||||||||
Sbjct: 899 tgctcttgctgtataagtaatacttgttaaaaacatgaagccatttgagattctccttgt 840

                  
Query: 377 cctcctc 383
           | |||||
Sbjct: 839 cttcctc 833
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>ref|NM_101319.2| Arabidopsis thaliana MIOX1 (MYO-INISITOL OXYGENASE); oxidoreductase
           AT1G14520 (MIOX1) mRNA, complete cds
          Length = 1159

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 317 tgctcttgctgtacaggtcatacttgttgaacac 350
           |||| |||||||| || |||||||||||||||||
Sbjct: 912 tgcttttgctgtagagatcatacttgttgaacac 879
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>gb|BT000187.1| Arabidopsis thaliana unknown protein (At1g14520) mRNA, complete cds
          Length = 1056

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 317 tgctcttgctgtacaggtcatacttgttgaacac 350
           |||| |||||||| || |||||||||||||||||
Sbjct: 853 tgcttttgctgtagagatcatacttgttgaacac 820
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>gb|AY136388.1| Arabidopsis thaliana unknown protein (At1g14520) mRNA, complete cds
          Length = 1160

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 317 tgctcttgctgtacaggtcatacttgttgaacac 350
           |||| |||||||| || |||||||||||||||||
Sbjct: 913 tgcttttgctgtagagatcatacttgttgaacac 880
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>dbj|AK221931.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-41-F22
          Length = 1160

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 317 tgctcttgctgtacaggtcatacttgttgaacac 350
           |||| |||||||| || |||||||||||||||||
Sbjct: 903 tgcttttgctgtagagatcatacttgttgaacac 870
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>emb|BX818200.1|CNS0ADVO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL66ZA04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1073

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 317 tgctcttgctgtacaggtcatacttgttgaacac 350
           |||| |||||||| || |||||||||||||||||
Sbjct: 872 tgcttttgctgtagagatcatacttgttgaacac 839
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>emb|BX813739.1|CNS0ADML Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB37ZE01 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1413

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 317  tgctcttgctgtacaggtcatacttgttgaacac 350
            |||| |||||||| || |||||||||||||||||
Sbjct: 1110 tgcttttgctgtagagatcatacttgttgaacac 1077
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>gb|AC010657.3|AC010657 Genomic sequence for Arabidopsis thaliana BAC T5E21 from chromosome
            I, complete sequence
          Length = 83351

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 317  tgctcttgctgtacaggtcatacttgttgaacac 350
            |||| |||||||| || |||||||||||||||||
Sbjct: 6029 tgcttttgctgtagagatcatacttgttgaacac 6062
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>dbj|AK176690.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-23-I20
          Length = 1133

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 317 tgctcttgctgtacaggtcatacttgttgaacac 350
           |||| |||||||| || |||||||||||||||||
Sbjct: 972 tgcttttgctgtagagatcatacttgttgaacac 939
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>dbj|AK175833.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-43-O13
          Length = 1160

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 317 tgctcttgctgtacaggtcatacttgttgaacac 350
           |||| |||||||| || |||||||||||||||||
Sbjct: 903 tgcttttgctgtagagatcatacttgttgaacac 870
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>dbj|AK175818.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-41-H22
          Length = 1160

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 317 tgctcttgctgtacaggtcatacttgttgaacac 350
           |||| |||||||| || |||||||||||||||||
Sbjct: 903 tgcttttgctgtagagatcatacttgttgaacac 870
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>dbj|AK175115.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-51-M10
          Length = 1133

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 317 tgctcttgctgtacaggtcatacttgttgaacac 350
           |||| |||||||| || |||||||||||||||||
Sbjct: 972 tgcttttgctgtagagatcatacttgttgaacac 939
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>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 111686

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 317   tgctcttgctgtacaggtcatacttgttgaacac 350
             |||| |||||||| || |||||||||||||||||
Sbjct: 99636 tgcttttgctgtagagatcatacttgttgaacac 99669
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>dbj|AK118307.1| Arabidopsis thaliana At1g14520 mRNA for unknown protein, complete
           cds, clone: RAFL19-59-D02
          Length = 1150

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 317 tgctcttgctgtacaggtcatacttgttgaacac 350
           |||| |||||||| || |||||||||||||||||
Sbjct: 903 tgcttttgctgtagagatcatacttgttgaacac 870
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>ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) on chromosome 7
          Length = 684973

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 70    tactggagttgacactactagcaac 94
             |||||| ||||||||||||||||||
Sbjct: 13592 tactggtgttgacactactagcaac 13616
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>dbj|AK131337.1| Homo sapiens cDNA FLJ16351 fis, clone TESTI2039060, moderately
            similar to Maltase-glucoamylase, intestinal
          Length = 3538

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 70   tactggagttgacactactagcaac 94
            |||||| ||||||||||||||||||
Sbjct: 3325 tactggtgttgacactactagcaac 3349
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>gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, complete sequence
          Length = 191041

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 70     tactggagttgacactactagcaac 94
              |||||| ||||||||||||||||||
Sbjct: 182955 tactggtgttgacactactagcaac 182979
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>ref|XM_936265.1| PREDICTED: Homo sapiens similar to Maltase-glucoamylase, intestinal
            (LOC642120), mRNA
          Length = 2196

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 70   tactggagttgacactactagcaac 94
            |||||| ||||||||||||||||||
Sbjct: 1425 tactggtgttgacactactagcaac 1449
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>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19
          Length = 84129

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 355   agccatttgaggttctccttgtcctcctc 383
             ||||||||||| ||||||||||| |||||
Sbjct: 26060 agccatttgagattctccttgtcttcctc 26088
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>gb|U66059.1| Human germline T-cell receptor beta chain
             Dopamine-beta-hydroxylase-like, TRY1, TRY2, TRY3,
             TCRBV27S1P, TCRBV22S1A2N1T, TCRBV9S1A1T, TCRBV7S1A1N2T,
             TCRBV5S1A1T, TCRBV13S3, TCRBV6S7P, TCRBV7S3A2T,
             TCRBV13S2A1T, TCRBV9S2A2PT, TCRBV7S2A1N4T,
             TCRBV13S9/13S2A1T, TCRBV6S5A1N1, TCRBV30S1P, TCRBV31S1,
             TCRBV13S5, TCRBV6S1A1N1, TCRBV32S1P, TCRBV5S5P,
             TCRBV1S1A1N1, TCRBV12S2A1T, TCRBV21S1, TCRBV8S4P,
             TCRBV12S3, TCRBV21S3A2N2T, TCRBV8S5P, TCRBV13S1 genes from
             bases 1 to 267156 (section 1 of 3)
          Length = 267156

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 70    tactggagttgacactactagcaac 94
             |||||| ||||||||||||||||||
Sbjct: 13592 tactggtgttgacactactagcaac 13616
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>ref|XM_849756.1| PREDICTED: Canis familiaris similar to phosphatase and actin
            regulator 3 isoform 1 (LOC612028), mRNA
          Length = 2724

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 364  aggttctccttgtcctcctc 383
            ||||||||||||||||||||
Sbjct: 1580 aggttctccttgtcctcctc 1561
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>gb|AC122930.4| Mus musculus BAC clone RP23-13L19 from chromosome 9, complete sequence
          Length = 224108

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 215    tccctgcctgggtgcctcctcacc 238
              ||||||||||||||||||| ||||
Sbjct: 177480 tccctgcctgggtgcctccacacc 177457
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>gb|AC122453.4| Mus musculus BAC clone RP24-258A18 from chromosome 17, complete
             sequence
          Length = 177389

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   cttttccttctgttttccat 163
             ||||||||||||||||||||
Sbjct: 30555 cttttccttctgttttccat 30574
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>gb|AC126280.4| Mus musculus BAC clone RP23-10P23 from 16, complete sequence
          Length = 211237

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 229    cctcctcaccatttcagcttctcc 252
              ||||||| ||||||||||||||||
Sbjct: 204745 cctcctcgccatttcagcttctcc 204768
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>gb|AC163720.2| Mus musculus BAC clone RP23-424C5 from chromosome 16, complete sequence
          Length = 206284

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 229    cctcctcaccatttcagcttctcc 252
              ||||||| ||||||||||||||||
Sbjct: 111558 cctcctcgccatttcagcttctcc 111535
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>dbj|AK039210.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230108C01 product:unclassifiable, full
            insert sequence
          Length = 3578

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  cttttccttctgttttccat 163
            ||||||||||||||||||||
Sbjct: 1983 cttttccttctgttttccat 1964
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>dbj|AK045146.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130040E15 product:fibronectin
            leucine rich transmembrane protein 3, full insert
            sequence
          Length = 4224

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  cttttccttctgttttccat 163
            ||||||||||||||||||||
Sbjct: 4200 cttttccttctgttttccat 4219
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>ref|NM_065859.3| Caenorhabditis elegans F01F1.7 (F01F1.7) mRNA, complete cds
          Length = 2282

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 tcttttccttctgttttcca 162
           ||||||||||||||||||||
Sbjct: 512 tcttttccttctgttttcca 493
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>dbj|AK018345.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:6530425P10 product:nudix
            (nucleoside diphosphate linked moiety X)-type motif 5,
            full insert sequence
          Length = 1676

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  cttttccttctgttttccat 163
            ||||||||||||||||||||
Sbjct: 1653 cttttccttctgttttccat 1672
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>gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosome 17, complete sequence
          Length = 132103

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    cttttccttctgttttccat 163
              ||||||||||||||||||||
Sbjct: 124485 cttttccttctgttttccat 124504
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>emb|AL358292.4|CNS05TDZ Human chromosome 14 DNA sequence BAC R-736P16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 180211

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    gaagctggaataataatact 191
              ||||||||||||||||||||
Sbjct: 101332 gaagctggaataataatact 101351
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>gb|AC005968.1|AC005968 Homo sapiens chromosome 18, clone hRPK.24_A_23, complete sequence
          Length = 145603

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    gaagctggaataataatact 191
              ||||||||||||||||||||
Sbjct: 113809 gaagctggaataataatact 113790
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>emb|CT573094.2| CH250-64B17, complete sequence
          Length = 144218

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    cttttccttctgttttccat 163
              ||||||||||||||||||||
Sbjct: 103981 cttttccttctgttttccat 104000
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>gb|U13070.1| Caenorhabditis elegans cosmid F01F1, complete sequence
          Length = 40824

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   tcttttccttctgttttcca 162
             ||||||||||||||||||||
Sbjct: 10307 tcttttccttctgttttcca 10326
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>emb|CT009704.12| Mouse DNA sequence from clone RP23-115B21 on chromosome 16, complete
              sequence
          Length = 226520

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 229    cctcctcaccatttcagcttctcc 252
              ||||||| ||||||||||||||||
Sbjct: 220155 cctcctcgccatttcagcttctcc 220132
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>emb|AL928924.12| Mouse DNA sequence from clone RP23-307E15 on chromosome 2, complete
             sequence
          Length = 195936

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   cttttccttctgttttccat 163
             ||||||||||||||||||||
Sbjct: 71343 cttttccttctgttttccat 71362
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>dbj|AP007296.1| Lotus japonicus genomic DNA, clone:LjT02J24, TM0401, complete sequence
          Length = 71160

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 248   tctccgggaagtacttctcgatga 271
             ||||||||||||||||||| ||||
Sbjct: 58836 tctccgggaagtacttctccatga 58813
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>dbj|AP006690.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT14J20, TM0388a,
             complete sequence
          Length = 47690

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 248   tctccgggaagtacttctcgatga 271
             ||||||||||||||||||| ||||
Sbjct: 26074 tctccgggaagtacttctccatga 26097
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>dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT43I02, TM0210a,
             complete sequence
          Length = 55211

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   tctcttttccttctgttttc 160
             ||||||||||||||||||||
Sbjct: 25376 tctcttttccttctgttttc 25357



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   tctcttttccttctgttttc 160
             ||||||||||||||||||||
Sbjct: 14393 tctcttttccttctgttttc 14374
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>emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chromosome 2, complete
             sequence
          Length = 158364

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   cttttccttctgttttccat 163
             ||||||||||||||||||||
Sbjct: 60890 cttttccttctgttttccat 60871


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,330,937
Number of Sequences: 3902068
Number of extensions: 3330937
Number of successful extensions: 68644
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68541
Number of HSP's gapped (non-prelim): 102
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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