ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1) 30 2.8
2RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (E... 29 8.2

>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 495 CYCALQNHFRWQEGSGTCEARCCGEEAQCHGS 400
           CY + ++H R   G   C+ + CG+   C+ S
Sbjct: 307 CYSSFRDHVRTHTGEKPCQCKHCGKAFTCYSS 338



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>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1361

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 112 YQMKLERIF*YLDDVHLLSGDCTWLNHNES 23
           YQMK++R F   ++VH+L+G  + +  N S
Sbjct: 652 YQMKVDRFFFIPEEVHILAGSSSIMVRNNS 681


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,364,475
Number of Sequences: 219361
Number of extensions: 896339
Number of successful extensions: 2257
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2257
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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