ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1269_PYRHO (O58984) Hypothetical UPF0098 protein PH1269 29 3.6
2ATM_ASPOR (Q2U639) Serine/threonine-protein kinase tel1 (EC 2.7.... 28 8.1

>Y1269_PYRHO (O58984) Hypothetical UPF0098 protein PH1269|
          Length = 198

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 180 GDGNHHAHIQFRAVDLS*SIKPGHSR 257
           G G HH H +  A+D + ++KPG SR
Sbjct: 149 GHGVHHYHFKVYALDTTLNLKPGASR 174



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>ATM_ASPOR (Q2U639) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase tel1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2925

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 160 ELVRLLPTHHVSVDCIIGTPTTLLQLVDMIIGPT-VFLSWTYLDL 29
           +L+ L+P HH SVD      + LL+L+  I+    +  SWT + +
Sbjct: 449 QLIPLIPRHHASVD---SKSSLLLRLLPNILDENGILASWTMITI 490


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,258,043
Number of Sequences: 219361
Number of extensions: 650193
Number of successful extensions: 1137
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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