ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC152400.9| Mus musculus chromosome 3, clone RP23-277L18, com... 40 3.4
2gb|DQ002016.1| Eurycorymbus cavaleriei clone EC6 microsatellite ... 40 3.4
3gb|AC016711.9| Homo sapiens BAC clone RP11-249O24 from 2, comple... 40 3.4
4emb|BX469886.5| Zebrafish DNA sequence from clone CH211-127D20 i... 40 3.4
5emb|AM085663.1| Minuartia biflora chloroplast trnT-trnL intergen... 40 3.4
6emb|AM085662.1| Minuartia biflora chloroplast trnT-trnL intergen... 40 3.4
7emb|AM085660.1| Minuartia biflora chloroplast trnT-trnL intergen... 40 3.4
8emb|AM085658.1| Minuartia biflora chloroplast trnT-trnL intergen... 40 3.4
9emb|AM085657.1| Minuartia biflora chloroplast trnT-trnL intergen... 40 3.4
10emb|AM085656.1| Minuartia biflora chloroplast trnT-trnL intergen... 40 3.4
11emb|AM085655.1| Minuartia biflora chloroplast trnT-trnL intergen... 40 3.4
12emb|AM085654.1| Minuartia biflora chloroplast trnT-trnL intergen... 40 3.4
13emb|AM085653.1| Minuartia biflora chloroplast trnT-trnL intergen... 40 3.4
14emb|AM085652.1| Minuartia biflora chloroplast trnT-trnL intergen... 40 3.4

>gb|AC152400.9| Mus musculus chromosome 3, clone RP23-277L18, complete sequence
          Length = 190913

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   actcatgtaaatttaatcag 176
             ||||||||||||||||||||
Sbjct: 65460 actcatgtaaatttaatcag 65479



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>gb|DQ002016.1| Eurycorymbus cavaleriei clone EC6 microsatellite sequence
          Length = 397

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 aggcaggtgatggtaatcat 194
           ||||||||||||||||||||
Sbjct: 119 aggcaggtgatggtaatcat 138



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>gb|AC016711.9| Homo sapiens BAC clone RP11-249O24 from 2, complete sequence
          Length = 122880

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     taaaataaatctagatatgt 43
              ||||||||||||||||||||
Sbjct: 112884 taaaataaatctagatatgt 112865



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>emb|BX469886.5| Zebrafish DNA sequence from clone CH211-127D20 in linkage group 19,
             complete sequence
          Length = 151598

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    ccaataatcatatcaacaag 85
             ||||||||||||||||||||
Sbjct: 26535 ccaataatcatatcaacaag 26516



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>emb|AM085663.1| Minuartia biflora chloroplast trnT-trnL intergenic spacer, isolate
           MB22
          Length = 1029

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 16  gcaataactaaaataaatctagat 39
           ||||||||||||| ||||||||||
Sbjct: 142 gcaataactaaaaaaaatctagat 165



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>emb|AM085662.1| Minuartia biflora chloroplast trnT-trnL intergenic spacer, isolate
           MB21
          Length = 1301

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 16  gcaataactaaaataaatctagat 39
           ||||||||||||| ||||||||||
Sbjct: 414 gcaataactaaaaaaaatctagat 437



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>emb|AM085660.1| Minuartia biflora chloroplast trnT-trnL intergenic spacer, isolate
           MB19
          Length = 1297

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 16  gcaataactaaaataaatctagat 39
           ||||||||||||| ||||||||||
Sbjct: 410 gcaataactaaaaaaaatctagat 433



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>emb|AM085658.1| Minuartia biflora chloroplast trnT-trnL intergenic spacer, isolate
           MB17
          Length = 1297

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 16  gcaataactaaaataaatctagat 39
           ||||||||||||| ||||||||||
Sbjct: 410 gcaataactaaaaaaaatctagat 433



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>emb|AM085657.1| Minuartia biflora chloroplast trnT-trnL intergenic spacer, isolate
           MB16
          Length = 1297

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 16  gcaataactaaaataaatctagat 39
           ||||||||||||| ||||||||||
Sbjct: 410 gcaataactaaaaaaaatctagat 433



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>emb|AM085656.1| Minuartia biflora chloroplast trnT-trnL intergenic spacer, isolate
           MB15
          Length = 1297

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 16  gcaataactaaaataaatctagat 39
           ||||||||||||| ||||||||||
Sbjct: 410 gcaataactaaaaaaaatctagat 433



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>emb|AM085655.1| Minuartia biflora chloroplast trnT-trnL intergenic spacer, isolate
           MB14
          Length = 1297

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 16  gcaataactaaaataaatctagat 39
           ||||||||||||| ||||||||||
Sbjct: 410 gcaataactaaaaaaaatctagat 433



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>emb|AM085654.1| Minuartia biflora chloroplast trnT-trnL intergenic spacer, isolate
           MB11
          Length = 1297

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 16  gcaataactaaaataaatctagat 39
           ||||||||||||| ||||||||||
Sbjct: 410 gcaataactaaaaaaaatctagat 433



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>emb|AM085653.1| Minuartia biflora chloroplast trnT-trnL intergenic spacer, isolate
           MB9
          Length = 1297

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 16  gcaataactaaaataaatctagat 39
           ||||||||||||| ||||||||||
Sbjct: 410 gcaataactaaaaaaaatctagat 433



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>emb|AM085652.1| Minuartia biflora chloroplast trnT-trnL intergenic spacer, isolate
           MB1
          Length = 1297

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 16  gcaataactaaaataaatctagat 39
           ||||||||||||| ||||||||||
Sbjct: 410 gcaataactaaaaaaaatctagat 433


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,088,709
Number of Sequences: 3902068
Number of extensions: 2088709
Number of successful extensions: 39209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39193
Number of HSP's gapped (non-prelim): 16
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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