ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart23h07 |
|---|---|
| Clone Library Name | barley_pub |
>STNA_DROME (Q24211) Protein stoned-A (StonedA) (Stn-A)| Length = 850 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/49 (34%), Positives = 30/49 (61%) Frame = -2 Query: 187 SQAS*SDGAKDNDERSHQPLATSSGVGRGVAATLVWSYYALAVRPVAAA 41 S A SDGA + E H+P+A +SG+G G +++++ + L+ + AA Sbjct: 45 SDAGESDGASSDVEAHHEPVAFNSGLGSGSSSSILNAQQQLSDQNQGAA 93
>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor| Length = 1700 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = -3 Query: 453 ISAQLWCSTARCCANPAKLFQVVPSSIRFQPRLLSC-CSSVQHDKLSRGRKKLEGNCWV 280 + Q+W C PA P++ RF + SC C S + +G+K E C V Sbjct: 987 VKPQIWLDDQCKCGCPASAQMTCPANKRFIEKSCSCECKSPMPSPIPQGKKWNEDKCVV 1045
>ALR_XANAC (Q8PGD0) Alanine racemase (EC 5.1.1.1)| Length = 366 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -3 Query: 333 QHDKLSRGRKKLEGNCWVVRAVAQPQLLRATLCMRHMLPVRLWLKLWLG-HRL 178 +HD+L R E + W V A PQ +RA + P+R+WLKL G HRL Sbjct: 83 EHDEL---RLIAEHDLWTVAAT--PQQVRALAEFQSPRPLRVWLKLDSGMHRL 130
>PGS1_HORSE (O46403) Biglycan precursor (Bone/cartilage proteoglycan I) (PG-S1)| Length = 372 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 324 CHV-VLNCSKIAAGAEI*LKRALPETTLLDLHNNE 425 CH+ V+ CS + G + K P+TTLLDL NNE Sbjct: 73 CHLRVVQCSDL--GLKAVPKEISPDTTLLDLQNNE 105
>ALR_XANCP (Q8P4R0) Alanine racemase (EC 5.1.1.1)| Length = 360 Score = 29.3 bits (64), Expect = 5.0 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -3 Query: 333 QHDKLSRGRKKLEGNCWVVRAVAQPQLLRATLCMRHMLPVRLWLKLWLG-HRL 178 +HD+L+ E + W V VA P +RA R P+R+WLKL G HRL Sbjct: 83 EHDELAL---IAEHDLWTV--VATPWQVRALAEFRSPRPLRVWLKLDSGMHRL 130
>VK02_SWPVK (Q08520) G-protein coupled receptor homolog K2| Length = 370 Score = 29.3 bits (64), Expect = 5.0 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = -3 Query: 432 STARCCANPAKLFQVVPSSIRFQPRLLSCCSSVQHDKLSRGRKKL 298 S ARCC NP ++ ++ +R R+ S CS + D +R RKKL Sbjct: 319 SLARCCINPI-IYTLIGEHVR--SRISSICSCIYRD--NRIRKKL 358
>VC03_SWPVK (P32229) G-protein coupled receptor homolog C3| Length = 269 Score = 29.3 bits (64), Expect = 5.0 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = -3 Query: 432 STARCCANPAKLFQVVPSSIRFQPRLLSCCSSVQHDKLSRGRKKL 298 S ARCC NP ++ ++ +R R+ S CS + D +R RKKL Sbjct: 218 SLARCCINPI-IYTLIGEHVR--SRISSICSCIYRD--NRIRKKL 257
>PGS1_SHEEP (O46390) Biglycan precursor (Bone/cartilage proteoglycan I) (PG-S1)| Length = 369 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 324 CHV-VLNCSKIAAGAEI*LKRALPETTLLDLHNNE 425 CH+ V+ CS + G + K P+TTLLDL NN+ Sbjct: 70 CHLRVVQCSDL--GLKAVPKEISPDTTLLDLQNND 102
>PGS1_RAT (P47853) Biglycan precursor (Bone/cartilage proteoglycan I) (PG-S1)| Length = 369 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 324 CHV-VLNCSKIAAGAEI*LKRALPETTLLDLHNNE 425 CH+ V+ CS + G + K P+TTLLDL NN+ Sbjct: 70 CHLRVVQCSDL--GLKTVPKEISPDTTLLDLQNND 102
>PGS1_MOUSE (P28653) Biglycan precursor (Bone/cartilage proteoglycan I) (PG-S1)| Length = 369 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 324 CHV-VLNCSKIAAGAEI*LKRALPETTLLDLHNNE 425 CH+ V+ CS + G + K P+TTLLDL NN+ Sbjct: 70 CHLRVVQCSDL--GLKTVPKEISPDTTLLDLQNND 102
>PGS1_BOVIN (P21809) Biglycan precursor (Bone/cartilage proteoglycan I) (PG-S1)| (Leucine-rich PG I) Length = 369 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 324 CHV-VLNCSKIAAGAEI*LKRALPETTLLDLHNNE 425 CH+ V+ CS + G + K P+TTLLDL NN+ Sbjct: 70 CHLRVVQCSDL--GLKAVPKEISPDTTLLDLQNND 102
>PGS1_PIG (Q9GKQ6) Biglycan precursor (Bone/cartilage proteoglycan I) (PG-S1)| (Fragments) Length = 272 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 324 CHV-VLNCSKIAAGAEI*LKRALPETTLLDLHNNE 425 CH+ V+ CS + G + K P+TTLLDL NN+ Sbjct: 70 CHLRVVQCSDL--GLKAVPKEISPDTTLLDLQNND 102
>PTA_CORGL (P77844) Phosphate acetyltransferase (EC 2.3.1.8)| (Phosphotransacetylase) Length = 329 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Frame = +2 Query: 44 GRHWAHGQCIIGP----DQSGSHATPHAATSCQRLVAPLIIVL 160 GR WA G C + P +Q G A A T+ Q + P + +L Sbjct: 162 GRLWAFGDCAVNPNPTAEQLGEIAVVSAKTAAQFGIDPRVAIL 204
>PGS1_HUMAN (P21810) Biglycan precursor (Bone/cartilage proteoglycan I) (PG-S1)| Length = 368 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 324 CHV-VLNCSKIAAGAEI*LKRALPETTLLDLHNNE 425 CH+ V+ CS + G + K P+TTLLDL NN+ Sbjct: 69 CHLRVVQCSDL--GLKSVPKEISPDTTLLDLQNND 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,753,365 Number of Sequences: 219361 Number of extensions: 1141564 Number of successful extensions: 3077 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2985 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3077 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
