>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein
          Length = 1225

 Score =  119 bits (60), Expect = 8e-24
 Identities = 63/64 (98%)
 Strand = Plus / Minus

                                                                        
Query: 395  aacaactttgctggatttgcacaacaacgagcagtactacaccacaactgagcactgatg 454
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1199 aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 1140

                
Query: 455  agat 458
            ||||
Sbjct: 1139 agat 1136

>gb|AC121082.13| Mus musculus chromosome 7, clone RP23-32F14, complete sequence
          Length = 231678

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 147    tcatcattgtcctttgccccatcactc 173
              |||||||| ||||||||||||||||||
Sbjct: 153248 tcatcattttcctttgccccatcactc 153222

>emb|AL390920.22| Human DNA sequence from clone RP11-384P18 on chromosome 10, complete
             sequence
          Length = 170365

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 180   gcctgtgaccaagccatagct 200
             |||||||||||||||||||||
Sbjct: 87484 gcctgtgaccaagccatagct 87504

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 45      gccgccactgggcgcacggcc 65
               |||||||||||||||||||||
Sbjct: 2415936 gccgccactgggcgcacggcc 2415956

>ref|XM_521983.1| PREDICTED: Pan troglodytes similar to expressed sequence AI841794
           (LOC466584), mRNA
          Length = 1269

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 403 tgctggatttgcacaacaac 422
           ||||||||||||||||||||
Sbjct: 407 tgctggatttgcacaacaac 426

>ref|NM_001005210.1| Homo sapiens leucine rich repeat containing 55 (LRRC55), mRNA
          Length = 3797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 403 tgctggatttgcacaacaac 422
           ||||||||||||||||||||
Sbjct: 554 tgctggatttgcacaacaac 573

>gb|AC099629.6| Mus musculus chromosome 15, clone RP24-86K17, complete sequence
          Length = 175809

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      aaatatggacattttaggtc 27
              ||||||||||||||||||||
Sbjct: 115699 aaatatggacattttaggtc 115680

>ref|XM_865354.1| PREDICTED: Bos taurus similar to spectrin beta isoform a
           (LOC614038), partial mRNA
          Length = 385

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 254 agctgaggctgagcaacggc 273
           ||||||||||||||||||||
Sbjct: 168 agctgaggctgagcaacggc 187

>ref|XM_610569.2| PREDICTED: Bos taurus similar to potassium inwardly rectifying
           channel, subfamily J, member 11 (LOC532060), mRNA
          Length = 2203

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 ctggtggctccgctcatcat 153
           ||||||||||||||||||||
Sbjct: 751 ctggtggctccgctcatcat 770

>gb|AC120055.5| Homo sapiens chromosome 18, clone CTD-2362J14, complete sequence
          Length = 96630

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   tgaaatctaattgaagaggg 384
             ||||||||||||||||||||
Sbjct: 44361 tgaaatctaattgaagaggg 44380

>ref|XM_847737.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a,
            transcript variant 3 (LOC490734), mRNA
          Length = 7482

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  agctgaggctgagcaacggc 273
            ||||||||||||||||||||
Sbjct: 6820 agctgaggctgagcaacggc 6839

>ref|XM_861283.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a,
            transcript variant 10 (LOC490734), mRNA
          Length = 7497

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  agctgaggctgagcaacggc 273
            ||||||||||||||||||||
Sbjct: 6835 agctgaggctgagcaacggc 6854

>ref|XM_861267.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a,
            transcript variant 9 (LOC490734), mRNA
          Length = 7587

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  agctgaggctgagcaacggc 273
            ||||||||||||||||||||
Sbjct: 6925 agctgaggctgagcaacggc 6944

>ref|XM_861254.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a,
            transcript variant 8 (LOC490734), mRNA
          Length = 7488

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  agctgaggctgagcaacggc 273
            ||||||||||||||||||||
Sbjct: 6826 agctgaggctgagcaacggc 6845

>ref|XM_861243.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a,
            transcript variant 7 (LOC490734), mRNA
          Length = 7494

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  agctgaggctgagcaacggc 273
            ||||||||||||||||||||
Sbjct: 6832 agctgaggctgagcaacggc 6851

>ref|XM_861231.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a,
            transcript variant 6 (LOC490734), mRNA
          Length = 7434

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  agctgaggctgagcaacggc 273
            ||||||||||||||||||||
Sbjct: 6772 agctgaggctgagcaacggc 6791

>ref|XM_861213.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a,
            transcript variant 5 (LOC490734), mRNA
          Length = 7692

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  agctgaggctgagcaacggc 273
            ||||||||||||||||||||
Sbjct: 7030 agctgaggctgagcaacggc 7049

>emb|AL357992.14| Human DNA sequence from clone RP11-162J8 on chromosome 6 Contains the
             3' end of the UST gene for uronyl-2-sulfotransferase and
             two novel genes, complete sequence
          Length = 155030

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   ccacagcctgacaggcagca 224
             ||||||||||||||||||||
Sbjct: 16464 ccacagcctgacaggcagca 16483

>emb|AL583917.1|MLEPRTN1 Mycobacterium leprae strain TN complete genome; segment 1/10
          Length = 344050

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    agctgaggctgagcaacggc 273
              ||||||||||||||||||||
Sbjct: 250697 agctgaggctgagcaacggc 250716

>emb|AL035500.1|MLCL373 Mycobacterium leprae cosmid L373
          Length = 37304

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   agctgaggctgagcaacggc 273
             ||||||||||||||||||||
Sbjct: 34844 agctgaggctgagcaacggc 34863

>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 80      ccagaccagagtggcagccacgcc 103
               ||||||||||||||||||| ||||
Sbjct: 2007537 ccagaccagagtggcagccccgcc 2007560

>dbj|AK127591.1| Homo sapiens cDNA FLJ45686 fis, clone FCBBF3012443
          Length = 3797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 403 tgctggatttgcacaacaac 422
           ||||||||||||||||||||
Sbjct: 554 tgctggatttgcacaacaac 573

>gb|AC148605.5| Gasterosteus aculeatus clone uogacrs-8c7-1, complete sequence
          Length = 38694

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   agcatatgccgcatgcacag 240
             ||||||||||||||||||||
Sbjct: 25238 agcatatgccgcatgcacag 25219

>gb|AC148777.1| Gasterosteus aculeatus clone uogacrs-2c11-1, complete sequence
          Length = 35576

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   agcatatgccgcatgcacag 240
             ||||||||||||||||||||
Sbjct: 10756 agcatatgccgcatgcacag 10737

>gb|AC103676.2| Homo sapiens chromosome 18, clone CTD-3223E7, complete sequence
          Length = 199566

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    tgaaatctaattgaagaggg 384
              ||||||||||||||||||||
Sbjct: 190952 tgaaatctaattgaagaggg 190971

>gb|AC091555.6| Homo sapiens chromosome 18, clone CTD-2387I11, complete sequence
          Length = 86914

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 365  tgaaatctaattgaagaggg 384
            ||||||||||||||||||||
Sbjct: 9286 tgaaatctaattgaagaggg 9267

>dbj|AP001786.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-176J24, complete
             sequences
          Length = 171744

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   tgctggatttgcacaacaac 422
             ||||||||||||||||||||
Sbjct: 92890 tgctggatttgcacaacaac 92909

>gb|DQ151348.1| Petromyzon marinus clone T.D8 variable lymphocyte receptor
           diversity region (VLR) mRNA, partial cds
          Length = 534

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 403 tgctggatttgcacaacaac 422
           ||||||||||||||||||||
Sbjct: 263 tgctggatttgcacaacaac 282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,206,168
Number of Sequences: 3902068
Number of extensions: 3206168
Number of successful extensions: 59282
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59208
Number of HSP's gapped (non-prelim): 74
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)