ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full ... 117 1e-23
2emb|AL592447.3| Human DNA sequence from clone RP11-405P11 on chr... 48 0.008
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.13
4dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.13
5emb|CR388384.13| Zebrafish DNA sequence from clone DKEY-22O22 in... 42 0.50
6emb|BX005012.7| Zebrafish DNA sequence from clone DKEY-11P23 in ... 42 0.50
7gb|AC149287.1| Solanum demissum chromosome 5 clone PGEC568D21 ma... 40 2.0
8gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 geno... 40 2.0
9emb|AL929541.41| Zebrafish DNA sequence from clone CH211-133D2 i... 40 2.0
10gb|AC146013.2| Pan troglodytes BAC clone RP43-128F23 from 7, com... 40 2.0
11emb|AL606840.5| Human DNA sequence from clone RP11-424B12 on chr... 40 2.0
12gb|BT009471.1| Triticum aestivum clone wr1.pk0028.b10:fis, full ... 40 2.0
13gb|AY105422.1| Zea mays PCO091928 mRNA sequence 40 2.0
14emb|CT573019.12| Mouse DNA sequence from clone RP24-94G12 on chr... 40 2.0
15gb|AC130723.4| Mus musculus BAC clone RP24-409P7 from 8, complet... 40 2.0
16gb|AC151815.1| Solanum demissum chromosome 5 clone PGEC472P22 ma... 38 7.8
17gb|AC149290.1| Solanum demissum chromosome 5 clone PGEC093P17 ma... 38 7.8
18gb|AC149291.1| Solanum demissum chromosome 5 clone PGEC568H16 ma... 38 7.8
19gb|AC149301.1| Solanum demissum chromosome 5 clone PGEC517A09 ma... 38 7.8
20gb|AC149095.2| Pan troglodytes BAC clone CH251-141L12 from Y, co... 38 7.8
21gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 38 7.8
22gb|AC114010.6| Mus musculus BAC clone RP24-378K23 from chromosom... 38 7.8
23ref|XM_905642.2| PREDICTED: Mus musculus similar to COMM domain-... 38 7.8
24emb|Z81047.2|CEC41G6 Caenorhabditis elegans Cosmid C41G6, comple... 38 7.8
25gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosom... 38 7.8
26gb|AC026261.8| Homo sapiens chromosome 8, clone RP11-610E3, comp... 38 7.8
27gb|AC122817.3| Mus musculus BAC clone RP23-241M6 from 16, comple... 38 7.8
28ref|XM_644205.1| Entamoeba histolytica HM-1:IMSS Rho GTPase acti... 38 7.8
29emb|AL512593.9| Human DNA sequence from clone RP11-508N12 on chr... 38 7.8
30emb|AL513353.7| Human DNA sequence from clone RP11-309N12 on chr... 38 7.8
31emb|AL132670.18|HSDJ90G1 Human DNA sequence from clone RP1-90G1 ... 38 7.8
32gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 38 7.8
33emb|AL021767.1|SPBC16C6 S.pombe chromosome II cosmid c16C6 38 7.8
34gb|AC021621.9| Homo sapiens chromosome 8, clone RP11-356M23, com... 38 7.8
35emb|AJ585088.1| Sus scrofa partial mRNA for mitogen-activated pr... 38 7.8
36gb|DQ077554.1| Uncultured bacterium MedeBAC49C08 clone MedeBAC49... 38 7.8
37dbj|BS000653.1| Pan troglodytes chromosome Y clone:PTB-017B13, c... 38 7.8
38dbj|BS000540.1| Pan troglodytes chromosome Y clone:PTB-144P03, c... 38 7.8
39gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 38 7.8
40emb|BX470158.9| Zebrafish DNA sequence from clone CH211-113P5 in... 38 7.8
41ref|NM_001023821.1| Schizosaccharomyces pombe 972h- hypothetical... 38 7.8
42dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
43gb|AC021301.6|AC021301 Homo sapiens chromosome 8, clone RP11-411... 38 7.8
44gb|AF343070.1|AF343070 Mycosphaerella fijiensis isolate 185.97.3... 38 7.8
45gb|AF343069.1|AF343069 Mycosphaerella fijiensis isolate 184.97.1... 38 7.8
46gb|AC009239.3|AC009239 Homo sapiens BAC clone RP11-470K20 from Y... 38 7.8
47gb|AC092698.11| Homo sapiens chromosome 8, clone RP11-813M16, co... 38 7.8
48emb|BX322625.9| Mouse DNA sequence from clone RP24-158I12 on chr... 38 7.8
49dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 38 7.8
50dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
51emb|AL845168.5| Zebrafish DNA sequence from clone DKEY-91M11, co... 38 7.8
52emb|BX908786.9| Zebrafish DNA sequence from clone CH211-13O8 in ... 38 7.8 
>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA sequence
          Length = 1805

 Score =  117 bits (59), Expect = 1e-23
 Identities = 84/92 (91%), Gaps = 4/92 (4%)
 Strand = Plus / Minus

                                                                        
Query: 74   ttagctaccatggacacaaaaga----gctagcggcccattttgctggtcgatcacctgc 129
            |||||||||||| ||||||||||    |||||||||||||||||||| ||||||||||||
Sbjct: 1660 ttagctaccatgtacacaaaagaaagagctagcggcccattttgctgatcgatcacctgc 1601

                                            
Query: 130  tattggcaaatggggggatgctctgctcgttc 161
            | ||||||||||| ||||||||||||||||||
Sbjct: 1600 tgttggcaaatggcgggatgctctgctcgttc 1569



 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 17   aagcaatcacaaaccagcatcaacaaatacatggacaaataaaggtaaatatgta 71
            |||||||| |||||||  ||||||||||||||| |||||||||| ||||| ||||
Sbjct: 1732 aagcaatctcaaaccaatatcaacaaatacatgtacaaataaagataaatgtgta 1678
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>emb|AL592447.3| Human DNA sequence from clone RP11-405P11 on chromosome 1 Contains a
            DEAD (Asp-Glu-Ala-As) box polypeptide 19 (DDX19)
            pseudogene, complete sequence
          Length = 142864

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 51   acaaataaaggtaaatatgtaact 74
            ||||||||||||||||||||||||
Sbjct: 2274 acaaataaaggtaaatatgtaact 2251
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 136      caaatggggggatgctctgctcgttc 161
                ||||||| ||||||||||||||||||
Sbjct: 20436758 caaatggcgggatgctctgctcgttc 20436783
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>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0659D09
          Length = 168253

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 136  caaatggggggatgctctgctcgttc 161
            ||||||| ||||||||||||||||||
Sbjct: 9053 caaatggcgggatgctctgctcgttc 9078
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>emb|CR388384.13| Zebrafish DNA sequence from clone DKEY-22O22 in linkage group 16,
             complete sequence
          Length = 123845

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    gacaaataaaggtaaatatgt 70
             |||||||||||||||||||||
Sbjct: 96223 gacaaataaaggtaaatatgt 96243
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>emb|BX005012.7| Zebrafish DNA sequence from clone DKEY-11P23 in linkage group 16,
            complete sequence
          Length = 213678

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 50   gacaaataaaggtaaatatgt 70
            |||||||||||||||||||||
Sbjct: 7664 gacaaataaaggtaaatatgt 7644
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>gb|AC149287.1| Solanum demissum chromosome 5 clone PGEC568D21 map MAP_LOC, complete
              sequence
          Length = 119525

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     acatggacaaataaaggtaa 64
              ||||||||||||||||||||
Sbjct: 118092 acatggacaaataaaggtaa 118073



 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    acatggacaaataaaggta 63
             |||||||||||||||||||
Sbjct: 93580 acatggacaaataaaggta 93562
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>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
              sequence
          Length = 121915

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     acatggacaaataaaggtaa 64
              ||||||||||||||||||||
Sbjct: 117140 acatggacaaataaaggtaa 117159
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>emb|AL929541.41| Zebrafish DNA sequence from clone CH211-133D2 in linkage group 10,
             complete sequence
          Length = 163769

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    aaataaaggtaaatatgtaa 72
             ||||||||||||||||||||
Sbjct: 48972 aaataaaggtaaatatgtaa 48991
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>gb|AC146013.2| Pan troglodytes BAC clone RP43-128F23 from 7, complete sequence
          Length = 191821

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 39     acaaatacatggacaaataaaggt 62
              ||||||||||| ||||||||||||
Sbjct: 117256 acaaatacatgtacaaataaaggt 117233
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>emb|AL606840.5| Human DNA sequence from clone RP11-424B12 on chromosome 6, complete
            sequence
          Length = 32178

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   aataaaggtaaatatgtaacttag 77
            |||||| |||||||||||||||||
Sbjct: 5027 aataaatgtaaatatgtaacttag 5004
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>gb|BT009471.1| Triticum aestivum clone wr1.pk0028.b10:fis, full insert mRNA
           sequence
          Length = 588

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 ggggggatgctctgctcgtt 160
           ||||||||||||||||||||
Sbjct: 390 ggggggatgctctgctcgtt 371
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>gb|AY105422.1| Zea mays PCO091928 mRNA sequence
          Length = 664

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 138 aatggggggatgctctgctcgttc 161
           ||||| ||||||||||||||||||
Sbjct: 144 aatggcgggatgctctgctcgttc 121
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>emb|CT573019.12| Mouse DNA sequence from clone RP24-94G12 on chromosome 14, complete
             sequence
          Length = 136188

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    acaaatacatggacaaataaaggt 62
             ||||||||||||||| ||||||||
Sbjct: 85616 acaaatacatggacacataaaggt 85593
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>gb|AC130723.4| Mus musculus BAC clone RP24-409P7 from 8, complete sequence
          Length = 197951

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aaataaaggtaaatatgtaa 72
             ||||||||||||||||||||
Sbjct: 92441 aaataaaggtaaatatgtaa 92422
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>gb|AC151815.1| Solanum demissum chromosome 5 clone PGEC472P22 map MAP_LOC, complete
            sequence
          Length = 136150

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 45   acatggacaaataaaggta 63
            |||||||||||||||||||
Sbjct: 3101 acatggacaaataaaggta 3119
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>gb|AC149290.1| Solanum demissum chromosome 5 clone PGEC093P17 map MAP_LOC, complete
             sequence
          Length = 200238

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    acatggacaaataaaggta 63
             |||||||||||||||||||
Sbjct: 47241 acatggacaaataaaggta 47223



 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    acatggacaaataaaggta 63
             |||||||||||||||||||
Sbjct: 43146 acatggacaaataaaggta 43128
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>gb|AC149291.1| Solanum demissum chromosome 5 clone PGEC568H16 map MAP_LOC, complete
             sequence
          Length = 146091

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 45    acatggacaaataaaggta 63
             |||||||||||||||||||
Sbjct: 25375 acatggacaaataaaggta 25393
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>gb|AC149301.1| Solanum demissum chromosome 5 clone PGEC517A09 map MAP_LOC, complete
              sequence
          Length = 133983

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     acatggacaaataaaggta 63
              |||||||||||||||||||
Sbjct: 127989 acatggacaaataaaggta 127971



 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     acatggacaaataaaggta 63
              |||||||||||||||||||
Sbjct: 123663 acatggacaaataaaggta 123645
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>gb|AC149095.2| Pan troglodytes BAC clone CH251-141L12 from Y, complete sequence
          Length = 170577

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 22     atcacaaaccagcatcaacaaat 44
              ||||||||||||||| |||||||
Sbjct: 122695 atcacaaaccagcataaacaaat 122673
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 50     gacaaataaaggtaaatat 68
              |||||||||||||||||||
Sbjct: 628761 gacaaataaaggtaaatat 628743
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>gb|AC114010.6| Mus musculus BAC clone RP24-378K23 from chromosome 12, complete
             sequence
          Length = 175670

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 45    acatggacaaataaaggta 63
             |||||||||||||||||||
Sbjct: 18798 acatggacaaataaaggta 18816
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>ref|XM_905642.2| PREDICTED: Mus musculus similar to COMM domain-containing protein 7
            (LOC631742), mRNA
          Length = 3923

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 4    caatcattgggggaagcaa 22
            |||||||||||||||||||
Sbjct: 3831 caatcattgggggaagcaa 3813
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>emb|Z81047.2|CEC41G6 Caenorhabditis elegans Cosmid C41G6, complete sequence
          Length = 31437

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    aaatacatggacaaataaa 59
             |||||||||||||||||||
Sbjct: 18521 aaatacatggacaaataaa 18539
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>gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosome 16, complete sequence
          Length = 196646

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     acaaatacatggacaaata 57
              |||||||||||||||||||
Sbjct: 181627 acaaatacatggacaaata 181645
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>gb|AC026261.8| Homo sapiens chromosome 8, clone RP11-610E3, complete sequence
          Length = 193670

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     acaaatacatggacaaata 57
              |||||||||||||||||||
Sbjct: 174174 acaaatacatggacaaata 174156
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>gb|AC122817.3| Mus musculus BAC clone RP23-241M6 from 16, complete sequence
          Length = 185702

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     acaaatacatggacaaata 57
              |||||||||||||||||||
Sbjct: 169236 acaaatacatggacaaata 169218
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>ref|XM_644205.1| Entamoeba histolytica HM-1:IMSS Rho GTPase activating protein,
           putative (321.t00002) partial mRNA
          Length = 879

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 52  caaataaaggtaaatatgt 70
           |||||||||||||||||||
Sbjct: 343 caaataaaggtaaatatgt 325
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>emb|AL512593.9| Human DNA sequence from clone RP11-508N12 on chromosome 9 Contains two
              novel genes, the gene for a novel zinc finger protein
              (FLJ14960, KIAA1803), a ribosomal protein L7a (RPL7A)
              pseudogene and the 3' end of a novel gene, complete
              sequence
          Length = 148816

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     aaatacatggacaaataaa 59
              |||||||||||||||||||
Sbjct: 128696 aaatacatggacaaataaa 128714
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>emb|AL513353.7| Human DNA sequence from clone RP11-309N12 on chromosome 9 Contains part
             of the AUH gene for AU RNA binding protein/enoyl-Coenzyme
             A hydratase, complete sequence
          Length = 105225

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 42    aatacatggacaaataaag 60
             |||||||||||||||||||
Sbjct: 59369 aatacatggacaaataaag 59387
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>emb|AL132670.18|HSDJ90G1 Human DNA sequence from clone RP1-90G1 on chromosome 6q14.1-15,
             complete sequence
          Length = 141944

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 84    tggacacaaaagagctagc 102
             |||||||||||||||||||
Sbjct: 57926 tggacacaaaagagctagc 57944
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 22      atcacaaaccagcatcaac 40
               |||||||||||||||||||
Sbjct: 1945423 atcacaaaccagcatcaac 1945405
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>emb|AL021767.1|SPBC16C6 S.pombe chromosome II cosmid c16C6
          Length = 34722

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   aaaccagcatcaacaaata 45
            |||||||||||||||||||
Sbjct: 9624 aaaccagcatcaacaaata 9642
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>gb|AC021621.9| Homo sapiens chromosome 8, clone RP11-356M23, complete sequence
          Length = 186114

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     acaaatacatggacaaata 57
              |||||||||||||||||||
Sbjct: 109602 acaaatacatggacaaata 109620
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>emb|AJ585088.1| Sus scrofa partial mRNA for mitogen-activated protein kinase kinase
           kinase 1 (MAP3K1 gene)
          Length = 796

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 126 ctgctattggcaaatgggg 144
           |||||||||||||||||||
Sbjct: 398 ctgctattggcaaatgggg 416
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>gb|DQ077554.1| Uncultured bacterium MedeBAC49C08 clone MedeBAC49C08, partial
           sequence
          Length = 67716

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 27  aaaccagcatcaacaaata 45
           |||||||||||||||||||
Sbjct: 716 aaaccagcatcaacaaata 734
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>dbj|BS000653.1| Pan troglodytes chromosome Y clone:PTB-017B13, complete sequences
          Length = 157263

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 22    atcacaaaccagcatcaacaaat 44
             ||||||||||||||| |||||||
Sbjct: 83484 atcacaaaccagcataaacaaat 83506
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>dbj|BS000540.1| Pan troglodytes chromosome Y clone:PTB-144P03, complete sequences
          Length = 171424

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 22     atcacaaaccagcatcaacaaat 44
              ||||||||||||||| |||||||
Sbjct: 157069 atcacaaaccagcataaacaaat 157091
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 22       atcacaaaccagcatcaacaaat 44
                ||||||||||||||| |||||||
Sbjct: 14720978 atcacaaaccagcataaacaaat 14720956
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>emb|BX470158.9| Zebrafish DNA sequence from clone CH211-113P5 in linkage group 8,
              complete sequence
          Length = 119483

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     aaatacatggacaaataaa 59
              |||||||||||||||||||
Sbjct: 107683 aaatacatggacaaataaa 107665
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>ref|NM_001023821.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC16C6.02c),
            partial mRNA
          Length = 9396

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 27   aaaccagcatcaacaaata 45
            |||||||||||||||||||
Sbjct: 1979 aaaccagcatcaacaaata 1961
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 96      agctagcggcccattttgctggt 118
               |||| ||||||||||||||||||
Sbjct: 4320015 agctggcggcccattttgctggt 4320037
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>gb|AC021301.6|AC021301 Homo sapiens chromosome 8, clone RP11-411P7, complete sequence
          Length = 140765

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    acaaatacatggacaaata 57
             |||||||||||||||||||
Sbjct: 98899 acaaatacatggacaaata 98917
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>gb|AF343070.1|AF343070 Mycosphaerella fijiensis isolate 185.97.3 cytochrome b (cytb) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 2180

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 51  acaaataaaggtaaatatgtaac 73
           ||||| |||||||||||||||||
Sbjct: 710 acaaaaaaaggtaaatatgtaac 732
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>gb|AF343069.1|AF343069 Mycosphaerella fijiensis isolate 184.97.1 cytochrome b (cytb) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 2180

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 51  acaaataaaggtaaatatgtaac 73
           ||||| |||||||||||||||||
Sbjct: 710 acaaaaaaaggtaaatatgtaac 732
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>gb|AC009239.3|AC009239 Homo sapiens BAC clone RP11-470K20 from Y, complete sequence
          Length = 136371

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 22    atcacaaaccagcatcaacaaat 44
             ||||||||||||||| |||||||
Sbjct: 42105 atcacaaaccagcataaacaaat 42127
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>gb|AC092698.11| Homo sapiens chromosome 8, clone RP11-813M16, complete sequence
          Length = 110085

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    gacaaataaaggtaaatat 68
             |||||||||||||||||||
Sbjct: 41617 gacaaataaaggtaaatat 41599
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>emb|BX322625.9| Mouse DNA sequence from clone RP24-158I12 on chromosome 2, complete
             sequence
          Length = 98004

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    ccagcatcaacaaatacat 48
             |||||||||||||||||||
Sbjct: 45018 ccagcatcaacaaatacat 45000
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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 99     tagcggcccattttgctgg 117
              |||||||||||||||||||
Sbjct: 951347 tagcggcccattttgctgg 951329
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>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1014_E09
          Length = 184624

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 96     agctagcggcccattttgctggt 118
              |||| ||||||||||||||||||
Sbjct: 141069 agctggcggcccattttgctggt 141091
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>emb|AL845168.5| Zebrafish DNA sequence from clone DKEY-91M11, complete sequence
          Length = 198627

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     aaatacatggacaaataaa 59
              |||||||||||||||||||
Sbjct: 140178 aaatacatggacaaataaa 140160
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>emb|BX908786.9| Zebrafish DNA sequence from clone CH211-13O8 in linkage group 3,
             complete sequence
          Length = 121030

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 55    ataaaggtaaatatgtaac 73
             |||||||||||||||||||
Sbjct: 21607 ataaaggtaaatatgtaac 21625


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,462,575
Number of Sequences: 3902068
Number of extensions: 1462575
Number of successful extensions: 110297
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110011
Number of HSP's gapped (non-prelim): 285
length of query: 161
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 139
effective length of database: 17,147,199,772
effective search space: 2383460768308
effective search space used: 2383460768308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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