ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, com... 62 3e-07
2gb|AC167969.2| Mus musculus BAC clone RP24-446H24 from chromosom... 38 4.0
3gb|AC125154.3| Mus musculus BAC clone RP24-380C2 from chromosome... 38 4.0
4gb|AC164576.4| Mus musculus 10 BAC RP23-50F14 (Roswell Park Canc... 38 4.0
5gb|AC122406.5| Mus musculus BAC clone RP24-126L14 from chromosom... 38 4.0
6gb|AC153485.9| Mus musculus 10 BAC RP23-319B13 (Roswell Park Can... 38 4.0
7emb|BX950866.15| Zebrafish DNA sequence from clone DKEY-3J24 in ... 38 4.0
8gb|AC007751.3|AC007751 Homo sapiens, clone 5_A_11, complete sequ... 38 4.0
9dbj|AP006544.1| Homo sapiens genomic DNA, chromosome 8q22.3, clo... 38 4.0

>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds
          Length = 1282

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 38   agtataggggcgaacggacaccgactagccagcacgcccgggcattggaattcaa 92
            |||||| | |||||||||||||||| |||||||||||||| ||||| | ||||||
Sbjct: 1201 agtatacgtgcgaacggacaccgaccagccagcacgcccgtgcattcgcattcaa 1147



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>gb|AC167969.2| Mus musculus BAC clone RP24-446H24 from chromosome 17, complete
             sequence
          Length = 178774

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    gacaccgactagccagcac 72
             |||||||||||||||||||
Sbjct: 78613 gacaccgactagccagcac 78595



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>gb|AC125154.3| Mus musculus BAC clone RP24-380C2 from chromosome 3, complete sequence
          Length = 186277

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     tttattattcataagtata 43
              |||||||||||||||||||
Sbjct: 130272 tttattattcataagtata 130290



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>gb|AC164576.4| Mus musculus 10 BAC RP23-50F14 (Roswell Park Cancer Institute
           (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 205209

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 26  ttattattcataagtatag 44
           |||||||||||||||||||
Sbjct: 463 ttattattcataagtatag 481



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>gb|AC122406.5| Mus musculus BAC clone RP24-126L14 from chromosome 17, complete sequence
          Length = 161377

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     gacaccgactagccagcac 72
              |||||||||||||||||||
Sbjct: 147767 gacaccgactagccagcac 147749



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>gb|AC153485.9| Mus musculus 10 BAC RP23-319B13 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 213412

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    ttattattcataagtatag 44
             |||||||||||||||||||
Sbjct: 94993 ttattattcataagtatag 95011



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>emb|BX950866.15| Zebrafish DNA sequence from clone DKEY-3J24 in linkage group 19,
            complete sequence
          Length = 96656

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   caacgtttattattcataa 38
            |||||||||||||||||||
Sbjct: 5967 caacgtttattattcataa 5985



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>gb|AC007751.3|AC007751 Homo sapiens, clone 5_A_11, complete sequence
          Length = 158963

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    ttattattcataagtatag 44
             |||||||||||||||||||
Sbjct: 73591 ttattattcataagtatag 73609



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>dbj|AP006544.1| Homo sapiens genomic DNA, chromosome 8q22.3, clone: KB1575F09, complete
             sequence
          Length = 126600

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    ttattattcataagtatag 44
             |||||||||||||||||||
Sbjct: 22766 ttattattcataagtatag 22748


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 501,296
Number of Sequences: 3902068
Number of extensions: 501296
Number of successful extensions: 45746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45736
Number of HSP's gapped (non-prelim): 10
length of query: 92
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 71
effective length of database: 17,151,101,840
effective search space: 1217728230640
effective search space used: 1217728230640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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