Clone Name | rbart23h04 |
---|---|
Clone Library Name | barley_pub |
>gb|AF425976.1| Cercartetus lepidus NADH dehydrogenase subunit 2 (NADH2) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1040 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 ttatcataactctcgccctcgc 55 |||||||||||||||||||||| Sbjct: 287 ttatcataactctcgccctcgc 308
>ref|XM_475564.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2397 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 277 accagctcgacaacctcggcctcgtgcg 304 ||||||||||| ||||||||||||||| Sbjct: 2201 accagctcgacggcctcggcctcgtgcg 2174
>ref|XM_476377.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1504 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gctcgacaacctcggcctcg 300 |||||||||||||||||||| Sbjct: 745 gctcgacaacctcggcctcg 764
>gb|AF043246.1| Trypanosoma cruzi cathepsin B-like protease precursor (tccb) mRNA, complete cds Length = 1356 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 cgccgcgcattgatacgcca 153 |||||||||||||||||||| Sbjct: 6 cgccgcgcattgatacgcca 25
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ccaccagctcgacaacctcg 294 |||||||||||||||||||| Sbjct: 953552 ccaccagctcgacaacctcg 953533
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gctcgacaacctcggcctcg 300 |||||||||||||||||||| Sbjct: 333035 gctcgacaacctcggcctcg 333016
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 277 accagctcgacaacctcggcctcgtgcg 304 ||||||||||| ||||||||||||||| Sbjct: 1489234 accagctcgacggcctcggcctcgtgcg 1489207
>gb|AC008236.4|AC008236 Drosophila melanogaster, chromosome 3R, region 95A-95A, BAC clone BACR24C15, complete sequence Length = 162923 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccagcacctaccaatccac 134 |||||||||||||||||||| Sbjct: 109850 tccagcacctaccaatccac 109869
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gctcgacaacctcggcctcg 300 |||||||||||||||||||| Sbjct: 167899 gctcgacaacctcggcctcg 167880
>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1317D11 Length = 135043 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gctcgacaacctcggcctcg 300 |||||||||||||||||||| Sbjct: 57273 gctcgacaacctcggcctcg 57254
>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0617C02 Length = 135605 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gctcgacaacctcggcctcg 300 |||||||||||||||||||| Sbjct: 85034 gctcgacaacctcggcctcg 85015
>dbj|AK121766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092A16, full insert sequence Length = 2482 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 277 accagctcgacaacctcggcctcgtgcg 304 ||||||||||| ||||||||||||||| Sbjct: 2065 accagctcgacggcctcggcctcgtgcg 2038
>dbj|AK106429.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-C01, full insert sequence Length = 2064 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 277 accagctcgacaacctcggcctcgtgcg 304 ||||||||||| ||||||||||||||| Sbjct: 1681 accagctcgacggcctcggcctcgtgcg 1654
>dbj|AK059175.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F05, full insert sequence Length = 1504 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gctcgacaacctcggcctcg 300 |||||||||||||||||||| Sbjct: 745 gctcgacaacctcggcctcg 764
>gb|AE003744.3| Drosophila melanogaster chromosome 3R, section 82 of 118 of the complete sequence Length = 244356 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccagcacctaccaatccac 134 |||||||||||||||||||| Sbjct: 20407 tccagcacctaccaatccac 20426
>gb|AF093117.1|AF093117 Homo sapiens chromosome 7qtelo BAC E3, complete sequence Length = 147216 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tcctcctcacggcccagctc 216 |||||||||||||||||||| Sbjct: 81219 tcctcctcacggcccagctc 81200
>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12, complete sequence Length = 144455 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 277 accagctcgacaacctcggcctcgtgcg 304 ||||||||||| ||||||||||||||| Sbjct: 83314 accagctcgacggcctcggcctcgtgcg 83287 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,590,760 Number of Sequences: 3902068 Number of extensions: 2590760 Number of successful extensions: 42948 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42868 Number of HSP's gapped (non-prelim): 80 length of query: 489 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 467 effective length of database: 17,147,199,772 effective search space: 8007742293524 effective search space used: 8007742293524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)