ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF425976.1| Cercartetus lepidus NADH dehydrogenase subunit 2 ... 44 0.42
2ref|XM_475564.1| Oryza sativa (japonica cultivar-group), predic... 40 6.6
3ref|XM_476377.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
4gb|AF043246.1| Trypanosoma cruzi cathepsin B-like protease precu... 40 6.6
5dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 40 6.6
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
8gb|AC008236.4|AC008236 Drosophila melanogaster, chromosome 3R, r... 40 6.6
9dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
10dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
11dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
12dbj|AK121766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
13dbj|AK106429.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
14dbj|AK059175.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
15gb|AE003744.3| Drosophila melanogaster chromosome 3R, section 82... 40 6.6
16gb|AF093117.1|AF093117 Homo sapiens chromosome 7qtelo BAC E3, co... 40 6.6
17gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6

>gb|AF425976.1| Cercartetus lepidus NADH dehydrogenase subunit 2 (NADH2) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 1040

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 34  ttatcataactctcgccctcgc 55
           ||||||||||||||||||||||
Sbjct: 287 ttatcataactctcgccctcgc 308



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>ref|XM_475564.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2397

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 277  accagctcgacaacctcggcctcgtgcg 304
            |||||||||||  |||||||||||||||
Sbjct: 2201 accagctcgacggcctcggcctcgtgcg 2174



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>ref|XM_476377.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1504

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 gctcgacaacctcggcctcg 300
           ||||||||||||||||||||
Sbjct: 745 gctcgacaacctcggcctcg 764



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>gb|AF043246.1| Trypanosoma cruzi cathepsin B-like protease precursor (tccb) mRNA,
           complete cds
          Length = 1356

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 cgccgcgcattgatacgcca 153
           ||||||||||||||||||||
Sbjct: 6   cgccgcgcattgatacgcca 25



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>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    ccaccagctcgacaacctcg 294
              ||||||||||||||||||||
Sbjct: 953552 ccaccagctcgacaacctcg 953533



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    gctcgacaacctcggcctcg 300
              ||||||||||||||||||||
Sbjct: 333035 gctcgacaacctcggcctcg 333016



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 277     accagctcgacaacctcggcctcgtgcg 304
               |||||||||||  |||||||||||||||
Sbjct: 1489234 accagctcgacggcctcggcctcgtgcg 1489207



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>gb|AC008236.4|AC008236 Drosophila melanogaster, chromosome 3R, region 95A-95A, BAC clone
              BACR24C15, complete sequence
          Length = 162923

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    tccagcacctaccaatccac 134
              ||||||||||||||||||||
Sbjct: 109850 tccagcacctaccaatccac 109869



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>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0446F04
          Length = 175390

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    gctcgacaacctcggcctcg 300
              ||||||||||||||||||||
Sbjct: 167899 gctcgacaacctcggcctcg 167880



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>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1317D11
          Length = 135043

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   gctcgacaacctcggcctcg 300
             ||||||||||||||||||||
Sbjct: 57273 gctcgacaacctcggcctcg 57254



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>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0617C02
          Length = 135605

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   gctcgacaacctcggcctcg 300
             ||||||||||||||||||||
Sbjct: 85034 gctcgacaacctcggcctcg 85015



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>dbj|AK121766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092A16, full
            insert sequence
          Length = 2482

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 277  accagctcgacaacctcggcctcgtgcg 304
            |||||||||||  |||||||||||||||
Sbjct: 2065 accagctcgacggcctcggcctcgtgcg 2038



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>dbj|AK106429.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-C01, full
            insert sequence
          Length = 2064

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 277  accagctcgacaacctcggcctcgtgcg 304
            |||||||||||  |||||||||||||||
Sbjct: 1681 accagctcgacggcctcggcctcgtgcg 1654



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>dbj|AK059175.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F05, full
           insert sequence
          Length = 1504

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 gctcgacaacctcggcctcg 300
           ||||||||||||||||||||
Sbjct: 745 gctcgacaacctcggcctcg 764



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>gb|AE003744.3| Drosophila melanogaster chromosome 3R, section 82 of 118 of the
             complete sequence
          Length = 244356

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   tccagcacctaccaatccac 134
             ||||||||||||||||||||
Sbjct: 20407 tccagcacctaccaatccac 20426



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>gb|AF093117.1|AF093117 Homo sapiens chromosome 7qtelo BAC E3, complete sequence
          Length = 147216

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   tcctcctcacggcccagctc 216
             ||||||||||||||||||||
Sbjct: 81219 tcctcctcacggcccagctc 81200



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>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12,
             complete sequence
          Length = 144455

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 277   accagctcgacaacctcggcctcgtgcg 304
             |||||||||||  |||||||||||||||
Sbjct: 83314 accagctcgacggcctcggcctcgtgcg 83287


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,590,760
Number of Sequences: 3902068
Number of extensions: 2590760
Number of successful extensions: 42948
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42868
Number of HSP's gapped (non-prelim): 80
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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