>HSP2_MURBR (P83212) Sperm protamine P2|
          Length = 58

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -1

Query: 267 RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSRK 136
           R +RRG+ R  KR  +G++RG     G++G +++   G++  R+
Sbjct: 2   RRRRRGKGRGKKRKGKGKKRGKGRRRGSKGRKKKKGKGKKRKRR 45

>VTS1_YEAST (Q08831) Protein VTS1 (VTI1-2 suppressor protein 1)|
          Length = 523

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 3   SYEIFEPSPRKKEKTAC*NHHRHRLHAHPIVASSTSIYTKHTSIPFG 143
           S+  F+P  R        +HH H LH HP+   +T+ Y  +TS P G
Sbjct: 355 SHSFFQPKKRSNMGNEYNSHHHHSLH-HPL--HNTTSYFSNTSRPSG 398

>HSP1_CHRPI (Q7LZB2) Sperm protamine P1-type (Protamine I-1)|
          Length = 58

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 267 RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSRK 136
           R++ R   R  +R  +G RRG R      G RRR + GRE +R+
Sbjct: 7   RSRSRSRRRRRRRGGRGGRRGRR--RRRHGQRRRGRRGRERTRR 48

>MRE11_ARATH (Q9XGM2) Double-strand break repair protein MRE11|
          Length = 720

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -1

Query: 495 SRKEKEDDFLVMKGTKLPQRPKKRAKNVDKSLQFVFPGMWLSDLTK 358
           ++K +EDD ++  G  L +R K R+     S QF+  G+   +LTK
Sbjct: 482 AKKFEEDDLILKVGECLEERLKDRSTRPTGSSQFLSTGLTSENLTK 527

>HSP1_PSECU (P42145) Sperm protamine P1|
          Length = 68

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = -1

Query: 267 RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSR 139
           R +RR   RS +R  +GRRRG  +  G RG RRR  + R   R
Sbjct: 26  RGRRRRYRRSRRRRRRGRRRGNCL--GRRGYRRRRYSRRRRRR 66

>SUWA_DROME (P12297) Protein suppressor of white apricot|
          Length = 963

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -3

Query: 385 GDVALGFDQKPLRGAREEMCQEEAKRAERDGEHGQRLGVKSAKKRRGE 242
           GDV L  D+  +RGA  E+   EA      G +G RL   SA+++R E
Sbjct: 90  GDVNLKIDRYDVRGALCELAPHEAP----PGGYGNRLEYLSAEEQRAE 133

>RSRC1_RAT (Q5PPJ2) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 300 GMESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSR 139
           G  S D++ E R++R+ + R  +R S       R +   +GGRR     R  SR
Sbjct: 2   GRRSSDTEEESRSKRKKKHR--RRSSSSSSSDSRTYSRKKGGRRPRSESRSWSR 53

>RSRC1_MOUSE (Q9DBU6) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 300 GMESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSR 139
           G  S D++ E R++R+ + R  +R S       R +   +GGRR     R  SR
Sbjct: 2   GRRSSDTEEESRSKRKKKHR--RRSSSSSSSDSRTYSRKKGGRRPRSDSRSWSR 53

>BLVR_BOVIN (Q03368) Bovine leukemia virus cell receptor precursor (BLV-R)|
           (BLVPCP1)
          Length = 843

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
 Frame = -1

Query: 486 EKEDDFLVMKGTKLPQRPKKRAKNVD--KSLQFVFPG----MWLSDLTKSRYXXXXXXXX 325
           EKED  LV K +K P++ +K+ K  +  K  + V  G     WLS    +          
Sbjct: 188 EKEDVPLVEKKSKKPKKKEKKHKEKEREKKKKEVEKGEDLDFWLSTTPPA---------- 237

Query: 324 XXXXRGLKGMESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKT 157
                    +E ++ ++     + G+E   +R+   +R G R W       RR  T
Sbjct: 238 -----ATPALEELEVNTTVTVLKEGQEEPRERNRMPKRTGSRTWRRNPPSTRRRNT 288

>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -1

Query: 294 ESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSRK 136
           +  D D E    RR  ERS +RD +  RR  R     R  R R K  R+ SR+
Sbjct: 220 DERDRDRERERDRR--ERSRERDKERERRRSRSRERRRRSRSREKEERKRSRE 270

>RSRC1_HUMAN (Q96IZ7) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 300 GMESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSR 139
           G  S D++ E R++R+ + R  +R S       R +   +GGR+     R  SR
Sbjct: 2   GRRSSDTEEESRSKRKKKHR--RRSSSSSSSDSRTYSRKKGGRKSRSKSRSWSR 53

>KCTD2_MOUSE (Q8CEZ0) Potassium channel tetramerisation domain-containing|
           protein 2
          Length = 266

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -1

Query: 306 LKGMESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSR--KE 133
           L+G    D+ +     R    R+    + GRRRG  + P  RG      T + L R  K 
Sbjct: 36  LRGRHPADTAASPPPPRTAGARARTSGADGRRRGRPLGPAQRGRYLLRDTRQTLGREPKS 95

Query: 132 WTCVLC 115
           + C LC
Sbjct: 96  FLCRLC 101

>AA2DA_BRARE (Q8JG70) Alpha-2Da adrenergic receptor (Alpha-2Da adrenoceptor)|
           (Alpha-2Da adrenoreceptor) (Alpha(2Da)AR)
          Length = 408

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = -1

Query: 294 ESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRV-W-----PGARGGRRRNKTG-RELSRK 136
           ES  SDS  R  R  + R  + + +G +R CRV W     PG+R  +  +K+   ++  K
Sbjct: 268 ESAASDSRARGSRFSKRRRVEGERRGPQRSCRVSWAAHQEPGSRQQQLASKSKVAQMREK 327

Query: 135 EWTCVL 118
            +T VL
Sbjct: 328 RFTFVL 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,884,159
Number of Sequences: 219361
Number of extensions: 995779
Number of successful extensions: 3332
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3327
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)