Clone Name | rbart23g11 |
---|---|
Clone Library Name | barley_pub |
>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor| Length = 286 Score = 32.7 bits (73), Expect = 0.48 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 11/70 (15%) Frame = -2 Query: 469 ITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARYEVYPFFFPL-----------DG 323 + C CV A E+ C R + Y SCM RY F L D Sbjct: 89 VNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVRYSDKFFLSTLETKPNTYWSSDDP 148 Query: 322 ADKSADEVGQ 293 KS D+ GQ Sbjct: 149 IPKSYDKFGQ 158
>KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) (LAM)| Length = 416 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 5/24 (20%) Frame = -3 Query: 216 LRGHSSSLCVP-----GPGGGGES 160 LRGH+S CVP PGGGG++ Sbjct: 315 LRGHTSGYCVPTFVVDAPGGGGKT 338
>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor| Length = 287 Score = 29.3 bits (64), Expect = 5.3 Identities = 12/38 (31%), Positives = 15/38 (39%) Frame = -2 Query: 469 ITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 356 + C CV A E+ C R + Y CM RY Sbjct: 92 VNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRY 129
>NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 474 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Frame = -2 Query: 259 CLWSTNY--V*STTVLSTRALQLVVRTWSWWW 170 CL +TNY + S T++ R LQL++ + WW Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMTTWW 359
>INO1_SPIPO (P42803) Inositol-3-phosphate synthase (EC 5.5.1.4)| (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) Length = 510 Score = 28.9 bits (63), Expect = 6.9 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 239 VVCTPQTNTSRVQDNLVALSDLVGRLVGAVEREE 340 VV NT R D +V L+D + L+ AVER+E Sbjct: 225 VVVLWTANTERYSDLVVGLNDTMENLLAAVERDE 258
>RT51_ASHGO (Q75B48) Mitochondrial 40S ribosomal protein MRP51 (Mitochondrial| ribosomal protein 51) Length = 360 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = +3 Query: 30 GFANMKITRWRFARNYIFTSKHVHKQTQGLDSRLATS*PYTNKWIRHHH 176 GF++ R + + TSK KQ + + ++A P KW++ HH Sbjct: 125 GFSSRLSARTPLSSFFGLTSKSDAKQWKAAEKKVAALRPAFKKWLQDHH 173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,996,932 Number of Sequences: 219361 Number of extensions: 1216635 Number of successful extensions: 3909 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3608 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3895 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)