ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor 33 0.48
2KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) ... 29 5.3
3UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein... 29 5.3
4NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 29 6.9
5INO1_SPIPO (P42803) Inositol-3-phosphate synthase (EC 5.5.1.4) (... 29 6.9
6RT51_ASHGO (Q75B48) Mitochondrial 40S ribosomal protein MRP51 (M... 28 9.1

>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor|
          Length = 286

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
 Frame = -2

Query: 469 ITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARYEVYPFFFPL-----------DG 323
           +    C  CV  A  E+   C   R   + Y SCM RY    F   L           D 
Sbjct: 89  VNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVRYSDKFFLSTLETKPNTYWSSDDP 148

Query: 322 ADKSADEVGQ 293
             KS D+ GQ
Sbjct: 149 IPKSYDKFGQ 158



to top

>KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) (LAM)|
          Length = 416

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 5/24 (20%)
 Frame = -3

Query: 216 LRGHSSSLCVP-----GPGGGGES 160
           LRGH+S  CVP      PGGGG++
Sbjct: 315 LRGHTSGYCVPTFVVDAPGGGGKT 338



to top

>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor|
          Length = 287

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -2

Query: 469 ITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 356
           +    C  CV  A  E+   C   R   + Y  CM RY
Sbjct: 92  VNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRY 129



to top

>NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 474

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 259 CLWSTNY--V*STTVLSTRALQLVVRTWSWWW 170
           CL +TNY  + S T++  R LQL++   + WW
Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMTTWW 359



to top

>INO1_SPIPO (P42803) Inositol-3-phosphate synthase (EC 5.5.1.4)|
           (Myo-inositol-1-phosphate synthase) (MI-1-P synthase)
           (IPS)
          Length = 510

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 239 VVCTPQTNTSRVQDNLVALSDLVGRLVGAVEREE 340
           VV     NT R  D +V L+D +  L+ AVER+E
Sbjct: 225 VVVLWTANTERYSDLVVGLNDTMENLLAAVERDE 258



to top

>RT51_ASHGO (Q75B48) Mitochondrial 40S ribosomal protein MRP51 (Mitochondrial|
           ribosomal protein 51)
          Length = 360

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 30  GFANMKITRWRFARNYIFTSKHVHKQTQGLDSRLATS*PYTNKWIRHHH 176
           GF++    R   +  +  TSK   KQ +  + ++A   P   KW++ HH
Sbjct: 125 GFSSRLSARTPLSSFFGLTSKSDAKQWKAAEKKVAALRPAFKKWLQDHH 173


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,996,932
Number of Sequences: 219361
Number of extensions: 1216635
Number of successful extensions: 3909
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3895
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top