>POLG_RHDVF (P27410) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 387  TSRQMMPEEEQTAVAARSGVRRMIGRVR 304
            T RQ+ PEE+Q  +  RSGVR  + R R
Sbjct: 1059 TRRQLRPEEDQVTIVGRSGVRNEVIRTR 1086

>POLG_RHDV3 (P27411) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 387  TSRQMMPEEEQTAVAARSGVRRMIGRVR 304
            T RQ+ P+E+Q  +  RSGVR  + R R
Sbjct: 1059 TRRQLRPDEDQVTIVGRSGVRNEVIRTR 1086

>POLG_RHDVA (Q86119) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 387  TSRQMMPEEEQTAVAARSGVRRMIGRVR 304
            T RQ+ P+E+Q  V  R GVR  + R R
Sbjct: 1059 TRRQLRPDEDQVTVVGRGGVRNEVIRTR 1086

>RLA1_ALTAL (P49148) 60S acidic ribosomal protein P1 (Allergen Alt a 12) (Alt a|
           XII)
          Length = 110

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 234 ATPAMRAMLLRSRVARGATSAEQGQQQQPMAAEEDAG 124
           A P   A+LLR R A  A +AE+ ++++   ++ED G
Sbjct: 69  AAPLPEALLLRWRAADAAPAAEEKKEEEKEESDEDMG 105

>POLG_RHDVS (Q86117) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 387  TSRQMMPEEEQTAVAARSGVRRMIGRVR 304
            T RQ+ P+E+Q  +  R GVR  + R R
Sbjct: 1059 TRRQLRPDEDQVTIVGRGGVRNEVIRTR 1086

>POLG_RHDVB (Q89273) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 387  TSRQMMPEEEQTAVAARSGVRRMIGRVR 304
            T RQ+ P+E+Q  +  R GVR  + R R
Sbjct: 1059 TRRQLRPDEDQVTIVGRGGVRNEVIRTR 1086

>ZGPAT_HUMAN (Q8N5A5) Zinc finger CCCH-type with G patch domain protein (Zinc|
           finger CCCH-type domain-containing protein 9)
          Length = 531

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -2

Query: 192 ARGATS-----AEQGQQQQPMAAEEDAGSSEPKIRST*TSSHMHTKWST-SYHVELV 40
           ARG+ S     AE G +      EE+ G  E ++  T  S+  ++ W T  YH  +V
Sbjct: 96  ARGSGSETVPKAEAGPESAAGGQEEEEGEDEEELSGTKVSAPYYSSWGTLEYHNAMV 152

>AKAP2_MOUSE (O54931) A-kinase anchor protein 2 (Protein kinase A-anchoring|
           protein 2) (PRKA2) (AKAP-2) (AKAP expressed in kidney
           and lung) (AKAP-KL)
          Length = 885

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 192 ARGATSAEQGQQQQPMAAEEDAGSSEP 112
           A   TS E  +QQ+P A  E+AGS  P
Sbjct: 609 AEAHTSKEGSEQQEPEATVEEAGSQTP 635


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,007,650
Number of Sequences: 219361
Number of extensions: 435198
Number of successful extensions: 1388
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)