Clone Name | rbart23g08 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_195328.1| Oryza sativa (japonica cultivar-group) putative cinnamyl alcohol dehydrogenase (OSJNBb0005F01.4), mRNA Length = 1257 Score = 230 bits (116), Expect = 3e-57 Identities = 275/328 (83%) Strand = Plus / Minus Query: 114 tactttaaagagctctctatgtcgattacaaaccggtacttcacatcccggttgacaagc 173 ||||| || ||| |||| |||||||||||||| || | | |||||||||| |||||| Sbjct: 1139 tacttgaacgagttctcaatgtcgattacaaagcgaaatctgacatcccggtcaacaagc 1080 Query: 174 ctctcgagagcctcgttgatgtagtctatctttatcaactcaatgtctgggtagattttg 233 |||| ||||||||||||||||| |||||||| |||| ||| || ||||||||||||||| Sbjct: 1079 ctctgaagagcctcgttgatgtaatctatcttgatcatctcgatatctgggtagattttg 1020 Query: 234 ttcaccgcacagaagtttatcatctcctgtgtgtccttcgtgcctccggttacactccca 293 || ||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||| Sbjct: 1019 tttgccgcacagaagtttatcatctcctggatgtccttcgtacctccagttacactacca 960 Query: 294 gataaagtccgtgcacccagattaagtgttgctggatgcactctgatttctccagggaag 353 |||||| |||| |||| |||||||| |||| ||||||||| ||||||| | |||||| Sbjct: 959 gataaactccgcccaccgagattaaggtttgcaggatgcactttgatttcacttgggaag 900 Query: 354 ccaactagtgccatcaggccaccaactttcagaagcgcaagataagggtcaaatgggtgg 413 | || ||||||||| | ||||||||||||||||||| |||||||| || |||||||| Sbjct: 899 ctaagtagtgccattacaccaccaactttcagaagcgtgagataaggatcgaatgggtga 840 Query: 414 tcaccagaggcagtatcgacaatgaagt 441 || || ||||| || || | |||||||| Sbjct: 839 tcgccggaggctgtgtcaataatgaagt 812
>dbj|AK068221.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135D23, full insert sequence Length = 1443 Score = 230 bits (116), Expect = 3e-57 Identities = 275/328 (83%) Strand = Plus / Minus Query: 114 tactttaaagagctctctatgtcgattacaaaccggtacttcacatcccggttgacaagc 173 ||||| || ||| |||| |||||||||||||| || | | |||||||||| |||||| Sbjct: 1207 tacttgaacgagttctcaatgtcgattacaaagcgaaatctgacatcccggtcaacaagc 1148 Query: 174 ctctcgagagcctcgttgatgtagtctatctttatcaactcaatgtctgggtagattttg 233 |||| ||||||||||||||||| |||||||| |||| ||| || ||||||||||||||| Sbjct: 1147 ctctgaagagcctcgttgatgtaatctatcttgatcatctcgatatctgggtagattttg 1088 Query: 234 ttcaccgcacagaagtttatcatctcctgtgtgtccttcgtgcctccggttacactccca 293 || ||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||| Sbjct: 1087 tttgccgcacagaagtttatcatctcctggatgtccttcgtacctccagttacactacca 1028 Query: 294 gataaagtccgtgcacccagattaagtgttgctggatgcactctgatttctccagggaag 353 |||||| |||| |||| |||||||| |||| ||||||||| ||||||| | |||||| Sbjct: 1027 gataaactccgcccaccgagattaaggtttgcaggatgcactttgatttcacttgggaag 968 Query: 354 ccaactagtgccatcaggccaccaactttcagaagcgcaagataagggtcaaatgggtgg 413 | || ||||||||| | ||||||||||||||||||| |||||||| || |||||||| Sbjct: 967 ctaagtagtgccattacaccaccaactttcagaagcgtgagataaggatcgaatgggtga 908 Query: 414 tcaccagaggcagtatcgacaatgaagt 441 || || ||||| || || | |||||||| Sbjct: 907 tcgccggaggctgtgtcaataatgaagt 880
>gb|AC104322.4| Oryza sativa chromosome 10 BAC OSJNBb0005F01 genomic sequence, complete sequence Length = 151428 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 114 tactttaaagagctctctatgtcgattacaaaccggtacttcacatcccggttgacaagc 173 ||||| || ||| |||| |||||||||||||| || | | |||||||||| |||||| Sbjct: 129215 tacttgaacgagttctcaatgtcgattacaaagcgaaatctgacatcccggtcaacaagc 129156 Query: 174 ctctcgagagcctcgttgatgtagtctatctttatcaactcaatgtctgggtagattttg 233 |||| ||||||||||||||||| |||||||| |||| ||| || ||||||||||||||| Sbjct: 129155 ctctgaagagcctcgttgatgtaatctatcttgatcatctcgatatctgggtagattttg 129096 Query: 234 ttcaccgcacagaagtttatcatctcctgtgtgtccttcgtgcctccggttacactccca 293 || ||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||| Sbjct: 129095 tttgccgcacagaagtttatcatctcctggatgtccttcgtacctccagttacactacca 129036 Query: 294 gataaagtccg 304 |||||| |||| Sbjct: 129035 gataaactccg 129025 Score = 75.8 bits (38), Expect = 1e-10 Identities = 107/130 (82%) Strand = Plus / Minus Query: 312 agattaagtgttgctggatgcactctgatttctccagggaagccaactagtgccatcagg 371 |||||||| |||| ||||||||| ||||||| | ||||||| || ||||||||| | Sbjct: 128903 agattaaggtttgcaggatgcactttgatttcacttgggaagctaagtagtgccattaca 128844 Query: 372 ccaccaactttcagaagcgcaagataagggtcaaatgggtggtcaccagaggcagtatcg 431 ||||||||||||||||||| |||||||| || |||||||| || || ||||| || || Sbjct: 128843 ccaccaactttcagaagcgtgagataaggatcgaatgggtgatcgccggaggctgtgtca 128784 Query: 432 acaatgaagt 441 | |||||||| Sbjct: 128783 ataatgaagt 128774
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 114 tactttaaagagctctctatgtcgattacaaaccggtacttcacatcccggttgacaagc 173 ||||| || ||| |||| |||||||||||||| || | | |||||||||| |||||| Sbjct: 6193810 tacttgaacgagttctcaatgtcgattacaaagcgaaatctgacatcccggtcaacaagc 6193751 Query: 174 ctctcgagagcctcgttgatgtagtctatctttatcaactcaatgtctgggtagattttg 233 |||| ||||||||||||||||| |||||||| |||| ||| || ||||||||||||||| Sbjct: 6193750 ctctgaagagcctcgttgatgtaatctatcttgatcatctcgatatctgggtagattttg 6193691 Query: 234 ttcaccgcacagaagtttatcatctcctgtgtgtccttcgtgcctccggttacactccca 293 || ||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||| Sbjct: 6193690 tttgccgcacagaagtttatcatctcctggatgtccttcgtacctccagttacactacca 6193631 Query: 294 gataaagtccg 304 |||||| |||| Sbjct: 6193630 gataaactccg 6193620 Score = 75.8 bits (38), Expect = 1e-10 Identities = 107/130 (82%) Strand = Plus / Minus Query: 312 agattaagtgttgctggatgcactctgatttctccagggaagccaactagtgccatcagg 371 |||||||| |||| ||||||||| ||||||| | ||||||| || ||||||||| | Sbjct: 6193498 agattaaggtttgcaggatgcactttgatttcacttgggaagctaagtagtgccattaca 6193439 Query: 372 ccaccaactttcagaagcgcaagataagggtcaaatgggtggtcaccagaggcagtatcg 431 ||||||||||||||||||| |||||||| || |||||||| || || ||||| || || Sbjct: 6193438 ccaccaactttcagaagcgtgagataaggatcgaatgggtgatcgccggaggctgtgtca 6193379 Query: 432 acaatgaagt 441 | |||||||| Sbjct: 6193378 ataatgaagt 6193369
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 114 tactttaaagagctctctatgtcgattacaaaccggtacttcacatcccggttgacaagc 173 ||||| || ||| |||| |||||||||||||| || | | |||||||||| |||||| Sbjct: 6195396 tacttgaacgagttctcaatgtcgattacaaagcgaaatctgacatcccggtcaacaagc 6195337 Query: 174 ctctcgagagcctcgttgatgtagtctatctttatcaactcaatgtctgggtagattttg 233 |||| ||||||||||||||||| |||||||| |||| ||| || ||||||||||||||| Sbjct: 6195336 ctctgaagagcctcgttgatgtaatctatcttgatcatctcgatatctgggtagattttg 6195277 Query: 234 ttcaccgcacagaagtttatcatctcctgtgtgtccttcgtgcctccggttacactccca 293 || ||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||| Sbjct: 6195276 tttgccgcacagaagtttatcatctcctggatgtccttcgtacctccagttacactacca 6195217 Query: 294 gataaagtccg 304 |||||| |||| Sbjct: 6195216 gataaactccg 6195206 Score = 75.8 bits (38), Expect = 1e-10 Identities = 107/130 (82%) Strand = Plus / Minus Query: 312 agattaagtgttgctggatgcactctgatttctccagggaagccaactagtgccatcagg 371 |||||||| |||| ||||||||| ||||||| | ||||||| || ||||||||| | Sbjct: 6195084 agattaaggtttgcaggatgcactttgatttcacttgggaagctaagtagtgccattaca 6195025 Query: 372 ccaccaactttcagaagcgcaagataagggtcaaatgggtggtcaccagaggcagtatcg 431 ||||||||||||||||||| |||||||| || |||||||| || || ||||| || || Sbjct: 6195024 ccaccaactttcagaagcgtgagataaggatcgaatgggtgatcgccggaggctgtgtca 6194965 Query: 432 acaatgaagt 441 | |||||||| Sbjct: 6194964 ataatgaagt 6194955
>gb|AC146766.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1112E06, complete sequence Length = 177488 Score = 121 bits (61), Expect = 2e-24 Identities = 127/149 (85%) Strand = Plus / Minus Query: 114 tactttaaagagctctctatgtcgattacaaaccggtacttcacatcccggttgacaagc 173 ||||| |||||| |||| |||||||||||||| ||| | ||||||||||||||| ||| Sbjct: 44458 tacttgaaagagttctcgatgtcgattacaaagcggaatctcacatcccggttgatgagc 44399 Query: 174 ctctcgagagcctcgttgatgtagtctatctttatcaactcaatgtctgggtagattttg 233 |||| ||||||||||||| |||||||||||| |||| ||| || |||||||| | ||| Sbjct: 44398 ctctgaagagcctcgttgacgtagtctatcttgatcatctctatatctgggtaaacattg 44339 Query: 234 ttcaccgcacagaagtttatcatctcctg 262 || | ||||||||||||||||||||||| Sbjct: 44338 tttgcagcacagaagtttatcatctcctg 44310 Score = 60.0 bits (30), Expect = 6e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 372 ccaccaactttcagaagcgcaagataagggtcaaatgggtggtcaccagaggcagtatcg 431 ||||||||||||||||||| |||||||| || || |||| |||||||| |||||||| Sbjct: 44012 ccaccaactttcagaagcgagagataaggatcgaactggtgatcaccagatgcagtatca 43953 Query: 432 acaatgaagt 441 | |||||||| Sbjct: 43952 ataatgaagt 43943
>gb|AC104845.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0091E08, complete sequence Length = 119526 Score = 121 bits (61), Expect = 2e-24 Identities = 127/149 (85%) Strand = Plus / Minus Query: 114 tactttaaagagctctctatgtcgattacaaaccggtacttcacatcccggttgacaagc 173 ||||| |||||| |||| |||||||||||||| ||| | ||||||||||||||| ||| Sbjct: 69311 tacttgaaagagttctcgatgtcgattacaaagcggaatctcacatcccggttgatgagc 69252 Query: 174 ctctcgagagcctcgttgatgtagtctatctttatcaactcaatgtctgggtagattttg 233 |||| ||||||||||||| |||||||||||| |||| ||| || |||||||| | ||| Sbjct: 69251 ctctgaagagcctcgttgacgtagtctatcttgatcatctctatatctgggtaaacattg 69192 Query: 234 ttcaccgcacagaagtttatcatctcctg 262 || | ||||||||||||||||||||||| Sbjct: 69191 tttgcagcacagaagtttatcatctcctg 69163 Score = 60.0 bits (30), Expect = 6e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 372 ccaccaactttcagaagcgcaagataagggtcaaatgggtggtcaccagaggcagtatcg 431 ||||||||||||||||||| |||||||| || || |||| |||||||| |||||||| Sbjct: 68865 ccaccaactttcagaagcgagagataaggatcgaactggtgatcaccagatgcagtatca 68806 Query: 432 acaatgaagt 441 | |||||||| Sbjct: 68805 ataatgaagt 68796
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 121 bits (61), Expect = 2e-24 Identities = 127/149 (85%) Strand = Plus / Minus Query: 114 tactttaaagagctctctatgtcgattacaaaccggtacttcacatcccggttgacaagc 173 ||||| |||||| |||| |||||||||||||| ||| | ||||||||||||||| ||| Sbjct: 23453798 tacttgaaagagttctcgatgtcgattacaaagcggaatctcacatcccggttgatgagc 23453739 Query: 174 ctctcgagagcctcgttgatgtagtctatctttatcaactcaatgtctgggtagattttg 233 |||| ||||||||||||| |||||||||||| |||| ||| || |||||||| | ||| Sbjct: 23453738 ctctgaagagcctcgttgacgtagtctatcttgatcatctctatatctgggtaaacattg 23453679 Query: 234 ttcaccgcacagaagtttatcatctcctg 262 || | ||||||||||||||||||||||| Sbjct: 23453678 tttgcagcacagaagtttatcatctcctg 23453650 Score = 60.0 bits (30), Expect = 6e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 372 ccaccaactttcagaagcgcaagataagggtcaaatgggtggtcaccagaggcagtatcg 431 ||||||||||||||||||| |||||||| || || |||| |||||||| |||||||| Sbjct: 23453352 ccaccaactttcagaagcgagagataaggatcgaactggtgatcaccagatgcagtatca 23453293 Query: 432 acaatgaagt 441 | |||||||| Sbjct: 23453292 ataatgaagt 23453283
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 121 bits (61), Expect = 2e-24 Identities = 127/149 (85%) Strand = Plus / Minus Query: 114 tactttaaagagctctctatgtcgattacaaaccggtacttcacatcccggttgacaagc 173 ||||| |||||| |||| |||||||||||||| ||| | ||||||||||||||| ||| Sbjct: 23763708 tacttgaaagagttctcgatgtcgattacaaagcggaatctcacatcccggttgatgagc 23763649 Query: 174 ctctcgagagcctcgttgatgtagtctatctttatcaactcaatgtctgggtagattttg 233 |||| ||||||||||||| |||||||||||| |||| ||| || |||||||| | ||| Sbjct: 23763648 ctctgaagagcctcgttgacgtagtctatcttgatcatctctatatctgggtaaacattg 23763589 Query: 234 ttcaccgcacagaagtttatcatctcctg 262 || | ||||||||||||||||||||||| Sbjct: 23763588 tttgcagcacagaagtttatcatctcctg 23763560 Score = 60.0 bits (30), Expect = 6e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 372 ccaccaactttcagaagcgcaagataagggtcaaatgggtggtcaccagaggcagtatcg 431 ||||||||||||||||||| |||||||| || || |||| |||||||| |||||||| Sbjct: 23763262 ccaccaactttcagaagcgagagataaggatcgaactggtgatcaccagatgcagtatca 23763203 Query: 432 acaatgaagt 441 | |||||||| Sbjct: 23763202 ataatgaagt 23763193
>gb|AC107878.2| Homo sapiens chromosome 18, clone RP11-138C8, complete sequence Length = 182375 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 7 aaaaaataaaactttttattaaca 30 |||||||||||||||||||||||| Sbjct: 76846 aaaaaataaaactttttattaaca 76869
>emb|CR388813.1| Gallus gallus finished cDNA, clone ChEST691j1 Length = 1030 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 243 cagaagtttatcatctcctgtgt 265 ||||||||||||||||||||||| Sbjct: 161 cagaagtttatcatctcctgtgt 183
>ref|XM_459487.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E04466g) partial mRNA Length = 861 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 285 acactcccagataaagtccgtg 306 |||||||||||||||||||||| Sbjct: 577 acactcccagataaagtccgtg 598
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 285 acactcccagataaagtccgtg 306 |||||||||||||||||||||| Sbjct: 317221 acactcccagataaagtccgtg 317200
>emb|BX813336.4| Mouse DNA sequence from clone RP23-207B5 on chromosome 2, complete sequence Length = 142773 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 7 aaaaaataaaactttttattaacaat 32 ||||||||||||||||| |||||||| Sbjct: 115731 aaaaaataaaacttttttttaacaat 115706
>emb|CT009638.5| Zebrafish DNA sequence from clone CH73-162A18 in linkage group 6, complete sequence Length = 101890 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcaaaaaataaaactttttat 25 ||||||||||||||||||||| Sbjct: 11194 tcaaaaaataaaactttttat 11174
>gb|AC135736.6| Mus musculus BAC clone RP23-251A14 from chromosome 16, complete sequence Length = 193253 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcaaaaaataaaactttttat 25 ||||||||||||||||||||| Sbjct: 98010 tcaaaaaataaaactttttat 97990
>gb|AC131151.2| Homo sapiens 3 BAC RP11-219E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109988 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 aaaaataaaactttttattaa 28 ||||||||||||||||||||| Sbjct: 45468 aaaaataaaactttttattaa 45488
>gb|AC125208.2| Mus musculus BAC clone RP23-183I4 from 6, complete sequence Length = 218080 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 caaaaaataaaactttttatt 26 ||||||||||||||||||||| Sbjct: 60005 caaaaaataaaactttttatt 59985
>emb|AL139097.16| Human DNA sequence from clone RP1-125E8 on chromosome 6, complete sequence Length = 112533 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aataaaactttttattaacaa 31 ||||||||||||||||||||| Sbjct: 74629 aataaaactttttattaacaa 74649
>gb|AY034405.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 747 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcaaaaaataaaactttttat 25 ||||||||||||||||||||| Sbjct: 588 tcaaaaaataaaactttttat 568
>gb|AY034399.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 748 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcaaaaaataaaactttttat 25 ||||||||||||||||||||| Sbjct: 588 tcaaaaaataaaactttttat 568
>gb|AY034389.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 744 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcaaaaaataaaactttttat 25 ||||||||||||||||||||| Sbjct: 585 tcaaaaaataaaactttttat 565
>gb|AY034388.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 746 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcaaaaaataaaactttttat 25 ||||||||||||||||||||| Sbjct: 588 tcaaaaaataaaactttttat 568
>gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence Length = 256879 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 aaaataaaactttttattaac 29 ||||||||||||||||||||| Sbjct: 50355 aaaataaaactttttattaac 50335
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 132 atgtcgattacaaaccggtacttcacatc 160 |||||||| || ||||||||||||||||| Sbjct: 2774027 atgtcgatcacgaaccggtacttcacatc 2773999
>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome Length = 1830138 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 aaaaaataaaactttttatta 27 ||||||||||||||||||||| Sbjct: 919956 aaaaaataaaactttttatta 919936
>gb|AY328217.1| Meconopsis primulina specimen-voucher E00060407 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast Length = 955 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tcaaaaaataaaacttttta 24 |||||||||||||||||||| Sbjct: 805 tcaaaaaataaaacttttta 786
>gb|AY328214.1| Meconopsis wumungensis specimen-voucher Gong 20020610 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast Length = 954 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tcaaaaaataaaacttttta 24 |||||||||||||||||||| Sbjct: 804 tcaaaaaataaaacttttta 785
>gb|AC167812.4| Mus musculus BAC clone RP24-299F5 from chromosome 18, complete sequence Length = 193523 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 144919 aaaaaataaaactttttatt 144938
>gb|AE014828.1| Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence Length = 273275 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 aaaaataaaactttttatta 27 |||||||||||||||||||| Sbjct: 225777 aaaaataaaactttttatta 225758
>gb|BC076553.1| Danio rerio zgc:91959, mRNA (cDNA clone MGC:91959 IMAGE:7041517), complete cds Length = 2860 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gatttctccagggaagccaa 357 |||||||||||||||||||| Sbjct: 297 gatttctccagggaagccaa 278
>gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chromosome 2, complete sequence Length = 176398 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 aagtttatcatctcctgtgt 265 |||||||||||||||||||| Sbjct: 147294 aagtttatcatctcctgtgt 147275
>emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in linkage group 7, complete sequence Length = 154034 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 54075 aaaaaataaaactttttatt 54056
>gb|AC132142.3| Mus musculus BAC clone RP23-75I5 from chromosome 7, complete sequence Length = 221548 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gctcaaaaaataaaactttt 22 |||||||||||||||||||| Sbjct: 187119 gctcaaaaaataaaactttt 187138
>emb|X62578.1|CCPLAS Cyanidium caldarium plastid genes ompR', psbD, psbC, rps16 and groEL Length = 7462 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aaaaataaaactttttatta 27 |||||||||||||||||||| Sbjct: 1146 aaaaataaaactttttatta 1165
>gb|AC102441.6| Mus musculus chromosome 18, clone RP24-160I12, complete sequence Length = 224556 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 161415 aaaaaataaaactttttatt 161434
>gb|AC138270.12| Mus musculus chromosome 7, clone RP23-323F17, complete sequence Length = 213855 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gctcaaaaaataaaactttt 22 |||||||||||||||||||| Sbjct: 186763 gctcaaaaaataaaactttt 186744
>emb|Z98755.1|HS76C18 Human DNA sequence from clone RP1-76C18 on chromosome 6q16.1-21 Contains a ClpX caseinolytic protease X homolog (E. coli) (CLPX) pseudogene, complete sequence Length = 149698 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tatcgacaatgaagtccagg 446 |||||||||||||||||||| Sbjct: 9350 tatcgacaatgaagtccagg 9369
>emb|AL441985.9| Human DNA sequence from clone RP11-417D4 on chromosome X Contains a pseudogene similar to part of ubiquitin-conjugating enzyme E2, complete sequence Length = 185969 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tatcgacaatgaagtccagg 446 |||||||||||||||||||| Sbjct: 167883 tatcgacaatgaagtccagg 167902
>emb|AL442127.7| Human DNA sequence from clone RP11-297I6 on chromosome 13 Contains two novel genes, the 5' end of the EFNB2 gene for ephrin-B2 (HTKL EPLG5 LERK5), an ATP synthase H+ transporting mitochondrial F0 complex subunit c pseudogene and two CpG islands, complete sequence Length = 210115 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 109973 aaaaaataaaactttttatt 109992
>emb|AL009029.1|HS164C20 Human DNA sequence from clone RP1-164C20 on chromosome 6q16.1-22.1, complete sequence Length = 161475 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 tatcgacaatgaagtccagg 446 |||||||||||||||||||| Sbjct: 2796 tatcgacaatgaagtccagg 2777
>gb|AC164290.4| Mus musculus BAC clone RP23-385O17 from chromosome 18, complete sequence Length = 205629 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 75672 aaaaaataaaactttttatt 75691
>emb|CR854952.6| Zebrafish DNA sequence from clone CH211-106K4 in linkage group 16, complete sequence Length = 27425 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 aaaaataaaactttttatta 27 |||||||||||||||||||| Sbjct: 3195 aaaaataaaactttttatta 3176
>emb|CR548622.8| Zebrafish DNA sequence from clone DKEY-189A9 in linkage group 11, complete sequence Length = 137993 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 tcaaaaaataaaacttttta 24 |||||||||||||||||||| Sbjct: 108104 tcaaaaaataaaacttttta 108123
>ref|NM_001002666.1| Danio rerio zgc:91959 (zgc:91959), mRNA Length = 2860 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gatttctccagggaagccaa 357 |||||||||||||||||||| Sbjct: 297 gatttctccagggaagccaa 278
>gb|S43831.1|S43831S1 Cyanidium caldarium 30S subunit ribosomal protein S16 (rps1 16), photosystem II 43 kda chlorophyll-binding protein (psbC), photosystem II reaction center D2 protein (psbD), and OmpR-like protein genes, complete cds; chloroplast Length = 4797 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 aaaaataaaactttttatta 27 |||||||||||||||||||| Sbjct: 3652 aaaaataaaactttttatta 3633
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome Length = 2225959 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aaaaataaaactttttatta 27 |||||||||||||||||||| Sbjct: 2146113 aaaaataaaactttttatta 2146132
>gb|AC013251.19| Homo sapiens 3 BAC RP11-38P22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176251 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 tatcgacaatgaagtccagg 446 |||||||||||||||||||| Sbjct: 100306 tatcgacaatgaagtccagg 100287
>gb|AC016561.7| Homo sapiens chromosome 5 clone CTC-466C4, complete sequence Length = 95105 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 attaacaatcagtcaccatt 43 |||||||||||||||||||| Sbjct: 32873 attaacaatcagtcaccatt 32854
>gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence Length = 184706 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 aagtttatcatctcctgtgt 265 |||||||||||||||||||| Sbjct: 123575 aagtttatcatctcctgtgt 123594
>gb|AC099339.6| Homo sapiens BAC clone RP11-206F17 from 4, complete sequence Length = 123182 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 22747 aaaaaataaaactttttatt 22728
>gb|AC087368.7| Homo sapiens chromosome 8, clone RP11-711G22, complete sequence Length = 185315 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 cttattttacatgtttctat 78 |||||||||||||||||||| Sbjct: 127742 cttattttacatgtttctat 127723
>gb|AC105924.4| Homo sapiens BAC clone RP11-706F1 from 4, complete sequence Length = 160050 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 8994 aaaaaataaaactttttatt 9013
>gb|AC093816.3| Homo sapiens BAC clone RP11-364P2 from 4, complete sequence Length = 170227 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caaaaaataaaactttttat 25 |||||||||||||||||||| Sbjct: 23050 caaaaaataaaactttttat 23031
>gb|AC068758.12| Homo sapiens 3 BAC RP11-285C9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125311 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aaaataaaactttttattaa 28 |||||||||||||||||||| Sbjct: 110129 aaaataaaactttttattaa 110110
>emb|BX465197.8| Zebrafish DNA sequence from clone DKEY-184E24 in linkage group 14, complete sequence Length = 101530 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 18619 aaaaaataaaactttttatt 18600
>gb|AY034401.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 749 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caaaaaataaaactttttat 25 |||||||||||||||||||| Sbjct: 589 caaaaaataaaactttttat 570
>gb|AY034396.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 750 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caaaaaataaaactttttat 25 |||||||||||||||||||| Sbjct: 588 caaaaaataaaactttttat 569
>gb|AY034394.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 747 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caaaaaataaaactttttat 25 |||||||||||||||||||| Sbjct: 587 caaaaaataaaactttttat 568
>gb|AY034393.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 750 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caaaaaataaaactttttat 25 |||||||||||||||||||| Sbjct: 589 caaaaaataaaactttttat 570
>gb|AY034391.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 750 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caaaaaataaaactttttat 25 |||||||||||||||||||| Sbjct: 589 caaaaaataaaactttttat 570
>gb|AY034390.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 749 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caaaaaataaaactttttat 25 |||||||||||||||||||| Sbjct: 589 caaaaaataaaactttttat 570
>gb|AY034386.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 748 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caaaaaataaaactttttat 25 |||||||||||||||||||| Sbjct: 588 caaaaaataaaactttttat 569
>gb|AY034384.1| Galerucella nymphaeae internal transcribed spacer 1, partial sequence Length = 749 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caaaaaataaaactttttat 25 |||||||||||||||||||| Sbjct: 589 caaaaaataaaactttttat 570
>gb|AC007821.4|AC007821 Drosophila melanogaster, chromosome 3R, region 99F-100A, BAC clone BACR48I02, complete sequence Length = 163741 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 tcctgtgtgtccttcgtgcc 277 |||||||||||||||||||| Sbjct: 44451 tcctgtgtgtccttcgtgcc 44432
>gb|AC097710.2| Homo sapiens BAC clone RP11-44H17 from 4, complete sequence Length = 156848 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tatcgacaatgaagtccagg 446 |||||||||||||||||||| Sbjct: 105814 tatcgacaatgaagtccagg 105833
>gb|AC151269.3| Mus musculus BAC clone RP24-271C20 from chromosome 17, complete sequence Length = 127948 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 attaagtgttgctggatgca 333 |||||||||||||||||||| Sbjct: 18514 attaagtgttgctggatgca 18495
>gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence Length = 413138 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 96916 aaaaaataaaactttttatt 96897
>emb|BX004867.7| Zebrafish DNA sequence from clone CH211-159K2 in linkage group 14, complete sequence Length = 160087 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 73072 aaaaaataaaactttttatt 73091
>emb|CR846099.7| Zebrafish DNA sequence from clone DKEY-182M23 in linkage group 12, complete sequence Length = 140422 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 37952 aaaaaataaaactttttatt 37933
>emb|Z82274.1|CEJC8 Caenorhabditis elegans Cosmid JC8, complete sequence Length = 39553 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 aaaataaaactttttattaa 28 |||||||||||||||||||| Sbjct: 20259 aaaataaaactttttattaa 20278
>gb|AE003775.2| Drosophila melanogaster chromosome 3R, section 113 of 118 of the complete sequence Length = 236096 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 tcctgtgtgtccttcgtgcc 277 |||||||||||||||||||| Sbjct: 61106 tcctgtgtgtccttcgtgcc 61087
>emb|CT030727.4| Mouse DNA sequence from clone RP23-273I12 on chromosome 17, complete sequence Length = 230658 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 attaagtgttgctggatgca 333 |||||||||||||||||||| Sbjct: 221327 attaagtgttgctggatgca 221346
>gb|AC090938.2| Homo sapiens chromosome 3 clone RP11-101A4 map 3p, complete sequence Length = 153632 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 tatcgacaatgaagtccagg 446 |||||||||||||||||||| Sbjct: 83601 tatcgacaatgaagtccagg 83582
>emb|AJ222982.1|ERH222982 Eranthis hyemalis tRNA-Leu exon and IGS Length = 866 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tcaaaaaataaaacttttta 24 |||||||||||||||||||| Sbjct: 769 tcaaaaaataaaacttttta 750
>emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, complete sequence Length = 163121 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 38210 aaaaaataaaactttttatt 38191
>gb|AC170813.3| Rhesus Macaque BAC CH250-421G6 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 165221 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aaaaaataaaactttttatt 26 |||||||||||||||||||| Sbjct: 57711 aaaaaataaaactttttatt 57730
>emb|AL596446.11| Mouse DNA sequence from clone RP23-386E10 on chromosome 11, complete sequence Length = 191735 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tgatttctccagggaagcca 356 |||||||||||||||||||| Sbjct: 106151 tgatttctccagggaagcca 106132
>emb|AL772326.5| Mouse DNA sequence from clone RP23-267E14 on chromosome 4, complete sequence Length = 165398 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aaaataaaactttttattaa 28 |||||||||||||||||||| Sbjct: 67952 aaaataaaactttttattaa 67933 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,971,021 Number of Sequences: 3902068 Number of extensions: 4971021 Number of successful extensions: 113755 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113462 Number of HSP's gapped (non-prelim): 288 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)