ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AT8B1_HUMAN (O43520) Probable phospholipid-transporting ATPase I... 30 1.2
2MATK_CICAR (Q5YK05) Maturase K (Intron maturase) 28 6.2

>AT8B1_HUMAN (O43520) Probable phospholipid-transporting ATPase IC (EC 3.6.3.1)|
           (Familial intrahepatic cholestasis type 1) (ATPase class
           I type 8B member 1)
          Length = 1251

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 34  QQCTHSSSGNPLAISIGPWINYFCIHKSTKRARTLLESRNPTVARRRSTTSSQQEM 201
           Q+      GN   I  G W+N   + K TKR + L      T   RR  T S++ +
Sbjct: 787 QESFFPPGGNRALIITGSWLNEILLEKKTKRNKILKLKFPRTEEERRMRTQSKRRL 842



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>MATK_CICAR (Q5YK05) Maturase K (Intron maturase)|
          Length = 509

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 26  QSVSSAHILAVEIPLQFQSGLGL----IISAYTNQPSVH 130
           Q +S    + VEIP   QSG  L    II +Y N  S+H
Sbjct: 92  QIISEGFAIVVEIPFFLQSGSSLKESEIIKSYKNLRSIH 130


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,587,032
Number of Sequences: 219361
Number of extensions: 665881
Number of successful extensions: 1404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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