>AROK_ARATH (Q9SJ05) Probable shikimate kinase, chloroplast precursor (EC|
           2.7.1.71)
          Length = 292

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 31/55 (56%), Positives = 44/55 (80%)
 Frame = -1

Query: 461 SGDPYTMAFSKLSTLAEQRGDAYANADVRVSLEEIASKLGHDDVSKLTPIDIALE 297
           SGD Y++AF +LS + ++RG+AY NA+ RVSLE IA+K G+ +VS LTP +IA+E
Sbjct: 227 SGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIE 281

>AROK_LYCES (Q00497) Shikimate kinase, chloroplast precursor (EC 2.7.1.71)|
          Length = 300

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 33/64 (51%), Positives = 41/64 (64%)
 Frame = -1

Query: 461 SGDPYTMAFSKLSTLAEQRGDAYANADVRVSLEEIASKLGHDDVSKLTPIDIALESLHKI 282
           SGD Y     +L+TL E RG+ YANA  RVSLE IA K    DV  +TP +I LE L +I
Sbjct: 229 SGDVYDTTLKRLTTLMETRGENYANASARVSLENIALK-REKDVCHITPAEITLEVLIQI 287

Query: 281 ESFV 270
           E+F+
Sbjct: 288 ENFL 291

>RPOA_CHLRE (Q8HUH2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 550

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 353 SKLGHDDVSKLTPIDIALESLHKIESFVVEDNV-ADSQTEPQAE 225
           + LGHD VS   P+D     + KI   + E+NV +D  T+P  E
Sbjct: 249 TSLGHDTVSNPIPLDAVFMPVTKINCIIEENNVYSDFSTDPSLE 292

>CAPP_ANASP (P28594) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 1026

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
 Frame = +3

Query: 33  LLFRFFLQLTTKRYSSFLPVDDTTKR--YSSFLPDDDTTNEQLKLTALGRALHVTKRINI 206
           LL + +  L+ ++  ++L  +  T+R   SS LP  D TN+ +K   + R+L     INI
Sbjct: 499 LLPQPYNDLSEEQRVAWLTTELQTRRPLISSELPFSDKTNDVIKTFRVVRSLQQEFGINI 558

Query: 207 LQRMHPFSLRLCLRVGDVV 263
            Q    + + +C +V DV+
Sbjct: 559 CQ---TYIISMCRQVSDVL 574

>NU157_YEAST (P40064) Nucleoporin NUP157 (Nuclear pore protein NUP157)|
          Length = 1391

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 270  DKALDLVERLKSNINWCQLRDIVMTQLRCN 359
            D A+DL ER   NI  C+LR +V   ++ N
Sbjct: 929  DTAIDLYERCAENIELCELRRVVDIMVKLN 958

>TBK1_XENLA (Q6DFJ6) Serine/threonine-protein kinase TBK1 (EC 2.7.11.1)|
          Length = 725

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -1

Query: 461 SGDPYTMAFSKLSTLAEQRGDAYANADVRVSLEEIASKLGHDDVSKLTPIDIALESLHKI 282
           +GD Y  A    ++L+ QR      ADV++   E+  KL H ++ KL  I+  + S HK+
Sbjct: 31  TGDLY--AVKVFNSLSFQRP-----ADVQMREFEVLKKLNHKNIVKLFAIEEEMSSRHKV 83

>AROC_CAMJR (Q5HSF9) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 362

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 128 GEKAGVSFRCIIDGEKAGVSF 66
           GE  GV+  CIIDG  AGV F
Sbjct: 14  GESHGVAVGCIIDGMPAGVKF 34

>AROC_CAMJE (Q9PM41) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 362

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 128 GEKAGVSFRCIIDGEKAGVSF 66
           GE  GV+  CIIDG  AGV F
Sbjct: 14  GESHGVAVGCIIDGMPAGVKF 34

>MIAA_PROMM (Q7TV75) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 299

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 226 SACGSVCESATLSSTTKLSILWSDSRAISIGVSLETS 336
           +A G  C +  L+   KLS+L  DSR + IG+ + T+
Sbjct: 15  TASGKTCLALQLAEQLKLSVLNVDSRQLYIGMDVGTA 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,661,613
Number of Sequences: 219361
Number of extensions: 1075946
Number of successful extensions: 3486
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3473
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)