ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart23g03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009529.1| Triticum aestivum clone wr1.pk0122.a3:fis, full insert mRNA sequence Length = 1061 Score = 377 bits (190), Expect = e-101 Identities = 270/296 (91%), Gaps = 3/296 (1%) Strand = Plus / Minus Query: 172 gccgcgcactacatgttacaaaaaggataaacatcctacagcgtatgcatcctttcagcc 231 ||||||| ||||||| |||||||||||| | |||||||| ||||||||||||| || Sbjct: 858 gccgcgctctacatggtacaaaaaggattcatatcctacaaggtatgcatcctttgagat 799 Query: 232 tgcggctctgtttgcgagtcggcgac---gttgtcttcgacgacaaagctctcgatcttg 288 |||| || ||||| ||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 798 tgcgattccgtttgtgagtcggcgacagcggtgtcttcgacgacaaagctctcgatcttg 739 Query: 289 tggagcgactcaagagcaatatcaattggtgtcagcttagagacatcgtcatgacccagc 348 ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 738 tggagcgactcgagagcaatatcaatcggtgtcagcttagagacgtcgtcatgacccagc 679 Query: 349 ttagatgcaatctcttcaagagaaactctgacatcagcatttgcataagcatcgcccctt 408 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 ttagatgcgatctcttcgagagaaactctgacatcagcatttgcataagcatcgcccctt 619 Query: 409 tgctccgcgagggtgctgagtttcgaaaaggccattgtgtatggatcgccggatgg 464 ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct: 618 tgctccgcgagcatgctgagtttcgaaaaggccattgtgtatggatcaccggatgg 563 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 53 acagcttacaacgaaaagatactccagc 80 ||||||||||| ||||||| |||||||| Sbjct: 937 acagcttacaaagaaaagacactccagc 910
>dbj|AB188834.1| Oryza sativa (japonica cultivar-group) OsSK1 mRNA for shikimate kinase 1, complete cds Length = 927 Score = 220 bits (111), Expect = 3e-54 Identities = 174/195 (89%) Strand = Plus / Minus Query: 270 gacaaagctctcgatcttgtggagcgactcaagagcaatatcaattggtgtcagcttaga 329 ||||||| |||||||||| || | |||||||| |||||| ||| ||||||| ||||| || Sbjct: 852 gacaaagttctcgatcttatgaaacgactcaatagcaatgtcagttggtgttagcttcga 793 Query: 330 gacatcgtcatgacccagcttagatgcaatctcttcaagagaaactctgacatcagcatt 389 ||||| ||||||||| | |||||||||||||||||||||||||| || ||||||||||| Sbjct: 792 tacatcatcatgaccctgtttagatgcaatctcttcaagagaaaccctcacatcagcatt 733 Query: 390 tgcataagcatcgcccctttgctccgcgagggtgctgagtttcgaaaaggccattgtgta 449 |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| Sbjct: 732 tgcataagcatcgcccctttgctccgcgagcatgctgagtttagaaaaagccattgtgta 673 Query: 450 tggatcgccggatgg 464 |||||| || ||||| Sbjct: 672 tggatcaccagatgg 658
>dbj|AK066687.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074E04, full insert sequence Length = 1356 Score = 190 bits (96), Expect = 3e-45 Identities = 150/168 (89%) Strand = Plus / Minus Query: 270 gacaaagctctcgatcttgtggagcgactcaagagcaatatcaattggtgtcagcttaga 329 ||||||| |||||||||| || | |||||||| |||||| ||| ||||||| ||||| || Sbjct: 1121 gacaaagttctcgatcttatgaaacgactcaatagcaatgtcagttggtgttagcttcga 1062 Query: 330 gacatcgtcatgacccagcttagatgcaatctcttcaagagaaactctgacatcagcatt 389 ||||| ||||||||| | |||||||||||||||||||||||||| || ||||||||||| Sbjct: 1061 tacatcatcatgaccctgtttagatgcaatctcttcaagagaaaccctcacatcagcatt 1002 Query: 390 tgcataagcatcgcccctttgctccgcgagggtgctgagtttcgaaaa 437 |||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct: 1001 tgcataagcatcgcccctttgctccgcgagcatgctgagtttagaaaa 954
>gb|AY104682.1| Zea mays PCO108968 mRNA sequence Length = 1305 Score = 161 bits (81), Expect = 2e-36 Identities = 159/185 (85%) Strand = Plus / Minus Query: 277 ctctcgatcttgtggagcgactcaagagcaatatcaattggtgtcagcttagagacatcg 336 ||||||||||| || || ||||||| || |||||| | || ||||||||||||||||| Sbjct: 1025 ctctcgatcttatgaagtgactcaattgcgatatcagtcggcatcagcttagagacatcg 966 Query: 337 tcatgacccagcttagatgcaatctcttcaagagaaactctgacatcagcatttgcataa 396 ||||||| | ||||||||||||||||| |||||||| || ||||| |||||||||||| Sbjct: 965 ccatgaccttgtttagatgcaatctcttccagagaaacccttacatccgcatttgcataa 906 Query: 397 gcatcgcccctttgctccgcgagggtgctgagtttcgaaaaggccattgtgtatggatcg 456 ||||| ||||||||||| || || ||||||| || ||||||||||||||||||||||| Sbjct: 905 gcatcacccctttgctctgcaagcatgctgagcttagaaaaggccattgtgtatggatca 846 Query: 457 ccgga 461 ||||| Sbjct: 845 ccgga 841
>dbj|AB188835.1| Oryza sativa (japonica cultivar-group) OsSK2 mRNA for shikimate kinase 2, complete cds Length = 924 Score = 117 bits (59), Expect = 3e-23 Identities = 134/159 (84%) Strand = Plus / Minus Query: 297 ctcaagagcaatatcaattggtgtcagcttagagacatcgtcatgacccagcttagatgc 356 ||||| ||||||||| | ||||| || || |||||||||||||| || | |||| ||| Sbjct: 819 ctcaatagcaatatcggtcggtgttagtttggagacatcgtcatggccttgtttagctgc 760 Query: 357 aatctcttcaagagaaactctgacatcagcatttgcataagcatcgcccctttgctccgc 416 ||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| || Sbjct: 759 aatttcttcaagagaaactcgagcatcagcatttgcataagcatcgcctctttgctctgc 700 Query: 417 gagggtgctgagtttcgaaaaggccattgtgtatggatc 455 || |||||||||| || |||||| |||||||||||| Sbjct: 699 aagcatgctgagttttgagaaggccgctgtgtatggatc 661
>dbj|AK109730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-B12, full insert sequence Length = 1918 Score = 117 bits (59), Expect = 3e-23 Identities = 134/159 (84%) Strand = Plus / Minus Query: 297 ctcaagagcaatatcaattggtgtcagcttagagacatcgtcatgacccagcttagatgc 356 ||||| ||||||||| | ||||| || || |||||||||||||| || | |||| ||| Sbjct: 1603 ctcaatagcaatatcggtcggtgttagtttggagacatcgtcatggccttgtttagttgc 1544 Query: 357 aatctcttcaagagaaactctgacatcagcatttgcataagcatcgcccctttgctccgc 416 ||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| || Sbjct: 1543 aatttcttcaagagaaactcgagcatcagcatttgcataagcatcgcctctttgctctgc 1484 Query: 417 gagggtgctgagtttcgaaaaggccattgtgtatggatc 455 || |||||||||| || |||||| |||||||||||| Sbjct: 1483 aagcatgctgagttttgagaaggccgctgtgtatggatc 1445
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Minus Query: 362 cttcaagagaaactctgacatcagcatttgcataagcatcgcccctttgctccgcgaggg 421 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 31512261 cttcaagagaaaccctcacatcagcatttgcataagcatcgcccctttgctccgcgagca 31512202 Query: 422 tgctgagtttcgaaaa 437 |||||||||| ||||| Sbjct: 31512201 tgctgagtttagaaaa 31512186 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 297 ctcaagagcaatatcaattggtgtcagcttagagacatcgtcatgacccagcttagatgc 356 ||||| |||||| ||| ||||||| ||||| || ||||| ||||||||| | |||||||| Sbjct: 31512473 ctcaatagcaatgtcagttggtgttagcttcgatacatcatcatgaccctgtttagatgc 31512414 Query: 357 aatctcttcaag 368 ||||||| |||| Sbjct: 31512413 aatctctgcaag 31512402
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11 Length = 155168 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Minus Query: 362 cttcaagagaaactctgacatcagcatttgcataagcatcgcccctttgctccgcgaggg 421 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 147658 cttcaagagaaaccctcacatcagcatttgcataagcatcgcccctttgctccgcgagca 147599 Query: 422 tgctgagtttcgaaaa 437 |||||||||| ||||| Sbjct: 147598 tgctgagtttagaaaa 147583 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 297 ctcaagagcaatatcaattggtgtcagcttagagacatcgtcatgacccagcttagatgc 356 ||||| |||||| ||| ||||||| ||||| || ||||| ||||||||| | |||||||| Sbjct: 147870 ctcaatagcaatgtcagttggtgttagcttcgatacatcatcatgaccctgtttagatgc 147811 Query: 357 aatctcttcaag 368 ||||||| |||| Sbjct: 147810 aatctctgcaag 147799
>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0431B06 Length = 154796 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Minus Query: 362 cttcaagagaaactctgacatcagcatttgcataagcatcgcccctttgctccgcgaggg 421 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2821 cttcaagagaaaccctcacatcagcatttgcataagcatcgcccctttgctccgcgagca 2762 Query: 422 tgctgagtttcgaaaa 437 |||||||||| ||||| Sbjct: 2761 tgctgagtttagaaaa 2746 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 297 ctcaagagcaatatcaattggtgtcagcttagagacatcgtcatgacccagcttagatgc 356 ||||| |||||| ||| ||||||| ||||| || ||||| ||||||||| | |||||||| Sbjct: 3033 ctcaatagcaatgtcagttggtgttagcttcgatacatcatcatgaccctgtttagatgc 2974 Query: 357 aatctcttcaag 368 ||||||| |||| Sbjct: 2973 aatctctgcaag 2962
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 362 cttcaagagaaactctgacatcagcatttgcataagcatcgcccctttgctccgcgaggg 421 ||||||||||||||| ||||||||||||||||||||||||| |||||||| || || Sbjct: 6506461 cttcaagagaaactcgagcatcagcatttgcataagcatcgcctctttgctctgcaagca 6506520 Query: 422 tgctgagtttcgaaaaggcc 441 |||||||||| || |||||| Sbjct: 6506521 tgctgagttttgagaaggcc 6506540
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 362 cttcaagagaaactctgacatcagcatttgcataagcatcgcccctttgctccgcgaggg 421 ||||||||||||||| ||||||||||||||||||||||||| |||||||| || || Sbjct: 22837 cttcaagagaaactcgagcatcagcatttgcataagcatcgcctctttgctctgcaagca 22896 Query: 422 tgctgagtttcgaaaaggcc 441 |||||||||| || |||||| Sbjct: 22897 tgctgagttttgagaaggcc 22916
>gb|AC158305.4| Mus musculus chromosome 1, clone RP23-131K23, complete sequence Length = 199641 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 atgacccagcttagatgcaa 358 |||||||||||||||||||| Sbjct: 166772 atgacccagcttagatgcaa 166791
>gb|AC148715.1| Macaca mulatta Major Histocompatibility Complex BAC MMU487N12, complete sequence Length = 153422 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gatactccagctttctcccc 89 |||||||||||||||||||| Sbjct: 824 gatactccagctttctcccc 843 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gatactccagctttctcccc 128 |||||||||||||||||||| Sbjct: 824 gatactccagctttctcccc 843
>gb|AC148678.1| Macaca mulatta Major Histocompatibility Complex BAC MMU125A15, complete sequence Length = 172875 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gatactccagctttctcccc 128 |||||||||||||||||||| Sbjct: 132303 gatactccagctttctcccc 132322 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gatactccagctttctcccc 89 |||||||||||||||||||| Sbjct: 132303 gatactccagctttctcccc 132322
>gb|AC101931.8| Mus musculus chromosome 1, clone RP24-63O23, complete sequence Length = 209705 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 atgacccagcttagatgcaa 358 |||||||||||||||||||| Sbjct: 198744 atgacccagcttagatgcaa 198725
>gb|AC102572.17| Mus musculus chromosome 18, clone RP23-234A9, complete sequence Length = 204140 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gtatgcatcctttcagcctg 233 |||||||||||||||||||| Sbjct: 136576 gtatgcatcctttcagcctg 136595 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,024,363 Number of Sequences: 3902068 Number of extensions: 3024363 Number of successful extensions: 50949 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50880 Number of HSP's gapped (non-prelim): 68 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
