ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190939.1| Oryza sativa (japonica cultivar-group), predic... 184 2e-43
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
3dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
4dbj|AK073813.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
5gb|BT016767.1| Zea mays clone Contig600 mRNA sequence 159 1e-35
6ref|NM_125621.2| Arabidopsis thaliana unknown protein AT5G62270 ... 52 0.002
7gb|AY389740.1| Hyacinthus orientalis unknown mRNA 52 0.002
8emb|BX832877.1|CNS0A1TJ Arabidopsis thaliana Full-length cDNA Co... 52 0.002
9dbj|AB019235.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 52 0.002
10gb|AC117834.6| Homo sapiens chromosome 8, clone CTD-3239E11, com... 44 0.42
11ref|XM_386228.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 42 1.7
12gb|AC087310.9| Homo sapiens 12p BAC RP11-681I19 (Roswell Park Ca... 42 1.7
13gb|AY431262.1| Aedes aegypti ASAP ID: 38189 conserved unknown mR... 40 6.5
14gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 6.5
15gb|AC111069.9| Mus musculus chromosome 18, clone RP24-164O22, co... 40 6.5
16emb|AL591042.5| Human DNA sequence from clone RP11-480L11 on chr... 40 6.5
17gb|AC021063.16| Mus Musculus Chromosome 18 RP23-179K16, complet... 40 6.5
18gb|AC112172.2| Homo sapiens chromosome 5 clone CTD-2118P12, comp... 40 6.5
19gb|AC170997.2| Mus musculus BAC clone RP24-198N9 from chromosome... 40 6.5
20gb|AC164612.4| Mus musculus BAC clone RP23-361B11 from chromosom... 40 6.5 
>ref|NM_190939.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1038

 Score =  184 bits (93), Expect = 2e-43
 Identities = 162/185 (87%)
 Strand = Plus / Minus

                                                                        
Query: 296  atcctcctccgccgtttgggagtctccctcttcacatacatcttctccgtgtcgttcagt 355
            ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||
Sbjct: 1019 atcctcctccgccgttttggagtctccctcttcacatacatcttctccatatcgtttagt 960

                                                                        
Query: 356  gggcggcttgatccatcgggcaaactgatgaacttccagccccctcctgaaccacgcctt 415
            ||||||||||||||||| || ||||||  |||||||||||| ||||| || || ||| ||
Sbjct: 959  gggcggcttgatccatcaggtaaactggcgaacttccagccacctccagagccccgcttt 900

                                                                        
Query: 416  ccctgtggtccgagcttctcaaccatgtaggcccatccatcgtctggtcgtcgtctgctg 475
              ||| | ||| || |||||||||||||||| |||||||||||| || ||||||| ||||
Sbjct: 899  gactgcgctccaagtttctcaaccatgtaggtccatccatcgtcgggccgtcgtcggctg 840

                 
Query: 476  tactt 480
            |||||
Sbjct: 839  tactt 835
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  184 bits (93), Expect = 2e-43
 Identities = 162/185 (87%)
 Strand = Plus / Plus

                                                                            
Query: 296      atcctcctccgccgtttgggagtctccctcttcacatacatcttctccgtgtcgttcagt 355
                ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||
Sbjct: 33950496 atcctcctccgccgttttggagtctccctcttcacatacatcttctccatatcgtttagt 33950555

                                                                            
Query: 356      gggcggcttgatccatcgggcaaactgatgaacttccagccccctcctgaaccacgcctt 415
                ||||||||||||||||| || ||||||  |||||||||||| ||||| || || ||| ||
Sbjct: 33950556 gggcggcttgatccatcaggtaaactggcgaacttccagccacctccagagccccgcttt 33950615

                                                                            
Query: 416      ccctgtggtccgagcttctcaaccatgtaggcccatccatcgtctggtcgtcgtctgctg 475
                  ||| | ||| || |||||||||||||||| |||||||||||| || ||||||| ||||
Sbjct: 33950616 gactgcgctccaagtttctcaaccatgtaggtccatccatcgtcgggccgtcgtcggctg 33950675

                     
Query: 476      tactt 480
                |||||
Sbjct: 33950676 tactt 33950680
to top
>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0003D09
          Length = 161970

 Score =  184 bits (93), Expect = 2e-43
 Identities = 162/185 (87%)
 Strand = Plus / Plus

                                                                         
Query: 296   atcctcctccgccgtttgggagtctccctcttcacatacatcttctccgtgtcgttcagt 355
             ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||
Sbjct: 81939 atcctcctccgccgttttggagtctccctcttcacatacatcttctccatatcgtttagt 81998

                                                                         
Query: 356   gggcggcttgatccatcgggcaaactgatgaacttccagccccctcctgaaccacgcctt 415
             ||||||||||||||||| || ||||||  |||||||||||| ||||| || || ||| ||
Sbjct: 81999 gggcggcttgatccatcaggtaaactggcgaacttccagccacctccagagccccgcttt 82058

                                                                         
Query: 416   ccctgtggtccgagcttctcaaccatgtaggcccatccatcgtctggtcgtcgtctgctg 475
               ||| | ||| || |||||||||||||||| |||||||||||| || ||||||| ||||
Sbjct: 82059 gactgcgctccaagtttctcaaccatgtaggtccatccatcgtcgggccgtcgtcggctg 82118

                  
Query: 476   tactt 480
             |||||
Sbjct: 82119 tactt 82123
to top
>dbj|AK073813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067K14, full
            insert sequence
          Length = 1531

 Score =  184 bits (93), Expect = 2e-43
 Identities = 162/185 (87%)
 Strand = Plus / Minus

                                                                        
Query: 296  atcctcctccgccgtttgggagtctccctcttcacatacatcttctccgtgtcgttcagt 355
            ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||
Sbjct: 1047 atcctcctccgccgttttggagtctccctcttcacatacatcttctccatatcgtttagt 988

                                                                        
Query: 356  gggcggcttgatccatcgggcaaactgatgaacttccagccccctcctgaaccacgcctt 415
            ||||||||||||||||| || ||||||  |||||||||||| ||||| || || ||| ||
Sbjct: 987  gggcggcttgatccatcaggtaaactggcgaacttccagccacctccagagccccgcttt 928

                                                                        
Query: 416  ccctgtggtccgagcttctcaaccatgtaggcccatccatcgtctggtcgtcgtctgctg 475
              ||| | ||| || |||||||||||||||| |||||||||||| || ||||||| ||||
Sbjct: 927  gactgcgctccaagtttctcaaccatgtaggtccatccatcgtcgggccgtcgtcggctg 868

                 
Query: 476  tactt 480
            |||||
Sbjct: 867  tactt 863
to top
>gb|BT016767.1| Zea mays clone Contig600 mRNA sequence
          Length = 1334

 Score =  159 bits (80), Expect = 1e-35
 Identities = 158/184 (85%)
 Strand = Plus / Minus

                                                                        
Query: 279  acttgtaaggagcaatgatcctcctccgccgtttgggagtctccctcttcacatacatct 338
            ||||||| || ||||| ||||||| ||||||||| |||||||||| ||| ||||||||||
Sbjct: 1069 acttgtatggtgcaattatcctccgccgccgttttggagtctcccgcttaacatacatct 1010

                                                                        
Query: 339  tctccgtgtcgttcagtgggcggcttgatccatcgggcaaactgatgaacttccagcccc 398
            ||||| | || || ||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct: 1009 tctccatatcatttagtggacggcttgatccatcaggcaagctgatgaacttccagcccc 950

                                                                        
Query: 399  ctcctgaaccacgccttccctgtggtccgagcttctcaaccatgtaggcccatccatcgt 458
            |||||  ||||||| ||||||| |  || ||||| || |||||||||  |||||||| ||
Sbjct: 949  ctcctccaccacgctttccctgagaaccaagcttttcgaccatgtagctccatccattgt 890

                
Query: 459  ctgg 462
            ||||
Sbjct: 889  ctgg 886
to top
>ref|NM_125621.2| Arabidopsis thaliana unknown protein AT5G62270 mRNA, complete cds
          Length = 1362

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 337  cttctccgtgtcgttcagtgggcggcttgatccatcgggcaaactgatgaacttccagcc 396
            ||||||| | ||||| ||||| |||||||||||||| || | ||| || |||||||||||
Sbjct: 1107 cttctccatttcgttgagtggtcggcttgatccatctggaagactcataaacttccagcc 1048

                  
Query: 397  ccctcc 402
             |||||
Sbjct: 1047 acctcc 1042
to top
>gb|AY389740.1| Hyacinthus orientalis unknown mRNA
          Length = 507

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 311 ttgggagtctccctcttcacatacatcttctccgtgtc 348
           |||| ||||||||||||||| |||||||||||| ||||
Sbjct: 229 ttggaagtctccctcttcacgtacatcttctccatgtc 192
to top
>emb|BX832877.1|CNS0A1TJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL19ZD06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 759

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 337 cttctccgtgtcgttcagtgggcggcttgatccatcgggcaaactgatgaacttccagcc 396
           ||||||| | ||||| ||||| |||||||||||||| || | ||| || |||||||||||
Sbjct: 503 cttctccatttcgttgagtggtcggcttgatccatctggaagactcataaacttccagcc 444

                 
Query: 397 ccctcc 402
            |||||
Sbjct: 443 acctcc 438
to top
>dbj|AB019235.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMI9
          Length = 81736

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                         
Query: 337   cttctccgtgtcgttcagtgggcggcttgatccatcgggcaaactgatgaacttccagcc 396
             ||||||| | ||||| ||||| |||||||||||||| || | ||| || |||||||||||
Sbjct: 35412 cttctccatttcgttgagtggtcggcttgatccatctggaagactcataaacttccagcc 35353

                   
Query: 397   ccctcc 402
              |||||
Sbjct: 35352 acctcc 35347
to top
>gb|AC117834.6| Homo sapiens chromosome 8, clone CTD-3239E11, complete sequence
          Length = 189536

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 101    aaaacaagatgaattctggtgg 122
              ||||||||||||||||||||||
Sbjct: 120679 aaaacaagatgaattctggtgg 120658
to top
>ref|XM_386228.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06052.1)
            partial mRNA
          Length = 2442

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 367  tccatcgggcaaactgatgaa 387
            |||||||||||||||||||||
Sbjct: 1413 tccatcgggcaaactgatgaa 1433
to top
>gb|AC087310.9| Homo sapiens 12p BAC RP11-681I19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 109567

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 277   ttacttgtaaggagcaatgat 297
             |||||||||||||||||||||
Sbjct: 80190 ttacttgtaaggagcaatgat 80210
to top
>gb|AY431262.1| Aedes aegypti ASAP ID: 38189 conserved unknown mRNA sequence
          Length = 910

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 445 ggcccatccatcgtctggtcgtcg 468
           ||||||||||| ||||||||||||
Sbjct: 511 ggcccatccatagtctggtcgtcg 488
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 285     aaggagcaatgatcctcctccgccgttt 312
               ||||||||||||||||| |||| |||||
Sbjct: 3754524 aaggagcaatgatcctcatccgacgttt 3754551
to top
>gb|AC111069.9| Mus musculus chromosome 18, clone RP24-164O22, complete sequence
          Length = 183457

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 100    caaaacaagatgaattctggtggc 123
              ||||||||||||||| ||||||||
Sbjct: 168171 caaaacaagatgaatgctggtggc 168194
to top
>emb|AL591042.5| Human DNA sequence from clone RP11-480L11 on chromosome 1 Contains part
              of the VAV3 gene for VAV3 oncogene, complete sequence
          Length = 148028

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 374    ggcaaactgatgaacttcca 393
              ||||||||||||||||||||
Sbjct: 102257 ggcaaactgatgaacttcca 102276
to top
>gb|AC021063.16| Mus Musculus Chromosome 18  RP23-179K16, complete sequence
          Length = 202807

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 100    caaaacaagatgaattctggtggc 123
              ||||||||||||||| ||||||||
Sbjct: 131103 caaaacaagatgaatgctggtggc 131080
to top
>gb|AC112172.2| Homo sapiens chromosome 5 clone CTD-2118P12, complete sequence
          Length = 128242

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   tattacttgtaaggagcaat 294
             ||||||||||||||||||||
Sbjct: 75670 tattacttgtaaggagcaat 75651
to top
>gb|AC170997.2| Mus musculus BAC clone RP24-198N9 from chromosome 9, complete sequence
          Length = 146891

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   cgttcagtgggcggcttgat 367
             ||||||||||||||||||||
Sbjct: 88794 cgttcagtgggcggcttgat 88813
to top
>gb|AC164612.4| Mus musculus BAC clone RP23-361B11 from chromosome 9, complete sequence
          Length = 202803

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   cgttcagtgggcggcttgat 367
             ||||||||||||||||||||
Sbjct: 43033 cgttcagtgggcggcttgat 43052


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,648,364
Number of Sequences: 3902068
Number of extensions: 3648364
Number of successful extensions: 63761
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63690
Number of HSP's gapped (non-prelim): 67
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top