ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart23f08 |
|---|---|
| Clone Library Name | barley_pub |
>YU247_STAAU (P0A0N8) UPF0247 protein| Length = 159 Score = 32.0 bits (71), Expect = 0.36 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%) Frame = +2 Query: 197 QRLIAKITEQSSII--EHQNTTLSHNRNGR-LSQQQRVGEERRVY----THGDRSDKLQS 355 QR++AKI QS++I E Q LS + L+Q+ G+ V+ ++G D LQ Sbjct: 61 QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR 120 Query: 356 SNYFLLFS 379 SNY L FS Sbjct: 121 SNYALSFS 128
>Y024_STAAW (Q8NYX2) UPF0247 protein MW0024| Length = 159 Score = 32.0 bits (71), Expect = 0.36 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%) Frame = +2 Query: 197 QRLIAKITEQSSII--EHQNTTLSHNRNGR-LSQQQRVGEERRVY----THGDRSDKLQS 355 QR++AKI QS++I E Q LS + L+Q+ G+ V+ ++G D LQ Sbjct: 61 QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR 120 Query: 356 SNYFLLFS 379 SNY L FS Sbjct: 121 SNYALSFS 128
>Y024_STAAS (Q6GD66) UPF0247 protein SAS0024| Length = 159 Score = 32.0 bits (71), Expect = 0.36 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%) Frame = +2 Query: 197 QRLIAKITEQSSII--EHQNTTLSHNRNGR-LSQQQRVGEERRVY----THGDRSDKLQS 355 QR++AKI QS++I E Q LS + L+Q+ G+ V+ ++G D LQ Sbjct: 61 QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR 120 Query: 356 SNYFLLFS 379 SNY L FS Sbjct: 121 SNYALSFS 128
>Y024_STAAR (Q6GKS1) UPF0247 protein SAR0024| Length = 159 Score = 32.0 bits (71), Expect = 0.36 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%) Frame = +2 Query: 197 QRLIAKITEQSSII--EHQNTTLSHNRNGR-LSQQQRVGEERRVY----THGDRSDKLQS 355 QR++AKI QS++I E Q LS + L+Q+ G+ V+ ++G D LQ Sbjct: 61 QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR 120 Query: 356 SNYFLLFS 379 SNY L FS Sbjct: 121 SNYALSFS 128
>Y024_STAAM (P0A0N6) UPF0247 protein SAV0024| Length = 159 Score = 32.0 bits (71), Expect = 0.36 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%) Frame = +2 Query: 197 QRLIAKITEQSSII--EHQNTTLSHNRNGR-LSQQQRVGEERRVY----THGDRSDKLQS 355 QR++AKI QS++I E Q LS + L+Q+ G+ V+ ++G D LQ Sbjct: 61 QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR 120 Query: 356 SNYFLLFS 379 SNY L FS Sbjct: 121 SNYALSFS 128
>Y023_STAAN (P0A0N7) UPF0247 protein SA0023| Length = 159 Score = 32.0 bits (71), Expect = 0.36 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%) Frame = +2 Query: 197 QRLIAKITEQSSII--EHQNTTLSHNRNGR-LSQQQRVGEERRVY----THGDRSDKLQS 355 QR++AKI QS++I E Q LS + L+Q+ G+ V+ ++G D LQ Sbjct: 61 QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR 120 Query: 356 SNYFLLFS 379 SNY L FS Sbjct: 121 SNYALSFS 128
>KAT3_ARATH (P92960) Potassium channel KAT3 (AKT4) (AtKC1) (Potassium channel| TKC) Length = 662 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = +2 Query: 191 QVQRLI-AKITEQSSIIEHQNTTLSHNRNGRLSQQQRVGEERRVYTHGDRSDKLQSSN 361 QVQ + ++ T QS+ + + T+S + NG++ +++R G +RV HG + N Sbjct: 551 QVQETVQSEETPQSN--DEEIVTVSRHENGQIEERRREGVPKRVIIHGQAPPNQDNKN 606
>G6PI_TREPA (O83488) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 535 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -1 Query: 250 VLVFDDGGLFRDLSNESLYLYILLSVGLEDHTWF 149 +LV G LSNE ++L GLE HT F Sbjct: 211 ILVSKSGTTLETLSNELFVAHVLRQAGLEPHTQF 244
>ASSY_SULAC (Q4J8F1) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 391 Score = 28.9 bits (63), Expect = 3.0 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +3 Query: 288 NSKELGRRGEFTPMVTDLTSYN 353 N K LGR+G+F+P ++ SYN Sbjct: 340 NMKILGRKGKFSPFSEEIASYN 361
>DOF53_ARATH (Q84TE9) Dof zinc finger protein DOF5.3 (AtDOF5.3)| Length = 257 Score = 28.9 bits (63), Expect = 3.0 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +3 Query: 162 SSNPT--DNNMYKYNDSLLRSRNNPPSSNTKTPRCLTTEMAGC 284 SSNPT DN+ K + + +R PP + PRC +T C Sbjct: 26 SSNPTPLDNDQKKPSPATAVTRPQPPELALRCPRCDSTNTKFC 68
>CL190_DROME (Q9VJE5) Restin homolog (Cytoplasmic linker protein 190)| (Microtubule-binding protein 190) (d-CLIP-190) Length = 1690 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +2 Query: 194 VQRLIAKITEQSSIIEHQNTTLSHN 268 VQ L K+ E SSIIE QNT L+ + Sbjct: 1240 VQNLEEKVRESSSIIEAQNTKLNES 1264
>SNX41_EMENI (Q5AZC9) Sorting nexin-41| Length = 615 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -1 Query: 106 GCWYRLKCPSVSWLNTSRCNAGGSPPSNN 20 G W+R P+VSW + S P NN Sbjct: 197 GVWWRFLDPNVSWSEVLHSHPASSVPKNN 225
>DNAJ_ACTAC (P77866) Chaperone protein dnaJ| Length = 375 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/30 (33%), Positives = 13/30 (43%) Frame = -3 Query: 356 RIVACQICHHGCKLSSPPQLFAVETACHFC 267 ++ C CH +L F E CHFC Sbjct: 158 KVETCPHCHGAGRLRRQQGFFVTEQPCHFC 187
>NEK1_HUMAN (Q96PY6) Serine/threonine-protein kinase Nek1 (EC 2.7.11.1)| (NimA-related protein kinase 1) (NY-REN-55 antigen) Length = 1258 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -2 Query: 381 EENNKK*LEDCSLSDLSPWV*TLLSSPTL 295 + NN K L CSL DLS TL+ PT+ Sbjct: 1041 DANNPKMLRTCSLPDLSKLFRTLMDVPTV 1069
>NEK1_MOUSE (P51954) Serine/threonine-protein kinase Nek1 (EC 2.7.11.1)| (NimA-related protein kinase 1) Length = 1203 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -2 Query: 381 EENNKK*LEDCSLSDLSPWV*TLLSSPTL 295 + NN K L CSL DLS TL+ PT+ Sbjct: 986 DANNPKMLRTCSLPDLSKLFRTLMDVPTV 1014
>POLG_CSFVB (P21530) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3898 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = -2 Query: 96 TVSNVRLFRG*TPLDVMPVARRRRTII 16 TV NV+++RG PL+V + RR + ++ Sbjct: 3039 TVKNVKVYRGRDPLEVRDMMRRGKILV 3065
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%) Frame = -3 Query: 164 RSYVVPPSSVEIQFCCSS---QRLLVPSQMSVC 75 RSYVVPP+ + + C+ +VP++ SVC Sbjct: 201 RSYVVPPAYSSVNYYCNEIDPGAEVVPNECSVC 233
>YOS1_SCHPO (P87319) Hypothetical protein C21C3.01c in chromosome II| Length = 3011 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Frame = +3 Query: 168 NPTDNNMYKYNDSLLRSRNNPPSSNTK----TPRCLTTEMAGCLNSKE 299 NP D + K N +LL+ + PP S K P C E+A C ++ Sbjct: 2380 NPIDASEGKNNTALLKYHDIPPHSEVKYSWDYPCCANKEIALCYGDQK 2427
>FBXL4_HUMAN (Q9UKA2) F-box/LRR-repeat protein 4 (F-box and leucine-rich repeat| protein 4) (F-box protein FBL4/FBL5) Length = 621 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = -2 Query: 294 CC*DSLPFLL*DSVVFWCSMMEDCSVILAMSRCTCTYYCQLDWKIIRG 151 CC D L ++ + +W + +D S+ SRCT + L W RG Sbjct: 314 CC-DPLQYIHLNLQPYWAKL-DDTSLEFLQSRCTLVQWLNLSWTGNRG 359
>Y023_STAHJ (Q4LAJ3) UPF0247 protein SH0023| Length = 159 Score = 27.3 bits (59), Expect = 8.8 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%) Frame = +2 Query: 197 QRLIAKITEQSSIIEHQNTTLSHNRNGRLSQQQR---VGEERRVY----THGDRSDKLQS 355 QRL+AKI Q+++I + + G + QR G+ V+ ++G + LQ Sbjct: 61 QRLLAKIKPQATVITLEIQGKMLSSEGLAEEMQRRMTQGQSDFVFVIGGSNGLHENVLQR 120 Query: 356 SNYFLLFS 379 SNY L FS Sbjct: 121 SNYALSFS 128
>VGLM_BUNYW (P04505) M polyprotein precursor [Contains: Glycoprotein G2;| Nonstructural protein NS-M; Glycoprotein G1] Length = 1433 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = -2 Query: 243 CSMMEDCS-VILAMSRCTCTYYCQLDWKIIRGSSVFCRDPVLLQLT 109 C ++ED V++ ++ +CTY Q++W +RG +F ++Q T Sbjct: 428 CGLLEDPEGVVVHKAKKSCTYSYQINW--VRGIMIFVAFLFVIQNT 471
>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)| (Zona occludens 1 protein) (Tight junction protein 1) Length = 1745 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = +3 Query: 162 SSNPTDNNMYKYNDSLLRSRNNPPSSNTKTPRCLTTEMAGCLNSKELGRRGEFTPM 329 S++ ++N+ N SL PP+S+ P CL A + +G RGE P+ Sbjct: 941 SASAVNHNVSVTNVSLEEPAPAPPTSHASQPGCLGAPSA---EAAHVGLRGEGPPL 993
>DNAJ_EHRRW (Q5HCG4) Chaperone protein dnaJ| Length = 382 Score = 27.3 bits (59), Expect = 8.8 Identities = 9/28 (32%), Positives = 12/28 (42%) Frame = -3 Query: 350 VACQICHHGCKLSSPPQLFAVETACHFC 267 V C CH + + F +E CH C Sbjct: 166 VQCNTCHGAGNIRTQQGFFTIERTCHVC 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,735,024 Number of Sequences: 219361 Number of extensions: 1044452 Number of successful extensions: 3483 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3376 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3477 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
