ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart23f08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 358 taattattttttgttgttttcttctt 383 |||||||||||||||||||| ||||| Sbjct: 28533 taattattttttgttgttttattctt 28558
>gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, complete sequence Length = 228842 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 tttttgttgttttcttcttgg 385 ||||||||||||||||||||| Sbjct: 198151 tttttgttgttttcttcttgg 198171
>gb|AF462604.1| Mus musculus HMG-L6 (Hmgl6), T2R6 (T2r6), and candidate taste receptor T2R4 (T2r4) genes, complete cds Length = 84503 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 attattttttgttgttttctt 380 ||||||||||||||||||||| Sbjct: 67389 attattttttgttgttttctt 67369
>emb|AL138698.15| Human DNA sequence from clone RP11-393H6 on chromosome 13q21.33-22.3 Contains part of the DACH gene for dachshund homolog (Drosophila) (DACH1 FLJ10138), a H3 histone family pseudogene and a ribosomal protein L21 (RPL21) pseudogene, complete sequence Length = 102371 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 359 aattattttttgttgttttct 379 ||||||||||||||||||||| Sbjct: 48082 aattattttttgttgttttct 48102
>ref|XM_785201.1| PREDICTED: Strongylocentrotus purpuratus similar to guanine nucleotide binding protein-like 2 (nucleolar) (LOC585370), mRNA Length = 2328 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 tcctccatcatcgaacaccaa 247 ||||||||||||||||||||| Sbjct: 711 tcctccatcatcgaacaccaa 691
>emb|AL626770.9| Mouse DNA sequence from clone RP23-379J18 on chromosome 11 Contains a novel gene and a serine/arginine repetitive matrix 1 (Srrm1) pseudogene, complete sequence Length = 188854 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 tttttgttgttttcttcttgg 385 ||||||||||||||||||||| Sbjct: 41382 tttttgttgttttcttcttgg 41402
>gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 from the MHC region, complete sequence Length = 153869 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 tttttgttgttttcttcttgg 385 ||||||||||||||||||||| Sbjct: 29740 tttttgttgttttcttcttgg 29720
>gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 from the MHC region, complete sequence Length = 172199 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 tttttgttgttttcttcttgg 385 ||||||||||||||||||||| Sbjct: 124156 tttttgttgttttcttcttgg 124136
>gb|AC098858.3| Homo sapiens BAC clone RP11-149A7 from 4, complete sequence Length = 172419 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 ctaattattttttgttgtttt 377 ||||||||||||||||||||| Sbjct: 146526 ctaattattttttgttgtttt 146506
>gb|AF230340.1|AF230340 Mus musculus nuclear RNA polymerase I small specific subunit Rpa12 gene, complete cds Length = 4591 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 tttttgttgttttcttcttgg 385 ||||||||||||||||||||| Sbjct: 2253 tttttgttgttttcttcttgg 2273
>gb|AC140204.3| Mus musculus BAC clone RP24-342N5 from chromosome 6, complete sequence Length = 200130 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 attattttttgttgttttctt 380 ||||||||||||||||||||| Sbjct: 99930 attattttttgttgttttctt 99950
>gb|AC007428.5|AC007428 Homo sapiens, clone RP11-69A1, complete sequence Length = 156180 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 359 aattattttttgttgttttct 379 ||||||||||||||||||||| Sbjct: 23328 aattattttttgttgttttct 23348
>gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 from the MHC region, complete sequence Length = 158414 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 tttttgttgttttcttcttgg 385 ||||||||||||||||||||| Sbjct: 124138 tttttgttgttttcttcttgg 124118
>emb|Z81549.2|CEF55C9 Caenorhabditis elegans Cosmid F55C9, complete sequence Length = 29404 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 tattttttgttgttttcttct 382 ||||||||||||||||||||| Sbjct: 10274 tattttttgttgttttcttct 10294
>emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chromosome 17, complete sequence Length = 202624 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 tttttgttgttttcttcttgg 385 ||||||||||||||||||||| Sbjct: 61646 tttttgttgttttcttcttgg 61666
>ref|NM_105060.1| Arabidopsis thaliana protein binding AT1G63850 mRNA, complete cds Length = 1647 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 1044 caagtacaacgactctttcctaagatca 1017
>gb|AY611148.1| Melanohalea olivacea voucher Vitikainen 16196 small subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 911 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttttttgttgttttcttctt 383 |||||||||||||||||||| Sbjct: 616 ttttttgttgttttcttctt 635
>gb|AC120859.12| Mus musculus chromosome 18, clone RP24-200D2, complete sequence Length = 184327 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gggaggagaggagagtttac 322 |||||||||||||||||||| Sbjct: 2258 gggaggagaggagagtttac 2239
>gb|AC172160.3| Pan troglodytes chromosome X clone PTB-96F20 map human otholog p11.4, complete sequence Length = 203345 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttttttgttgttttcttctt 383 |||||||||||||||||||| Sbjct: 156782 ttttttgttgttttcttctt 156801
>ref|NM_001039590.1| Homo sapiens ubiquitin specific peptidase 9, X-linked (USP9X), transcript variant 3, mRNA Length = 12401 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttttttgttgttttcttctt 383 |||||||||||||||||||| Sbjct: 10381 ttttttgttgttttcttctt 10400
>ref|NM_001039591.1| Homo sapiens ubiquitin specific peptidase 9, X-linked (USP9X), transcript variant 4, mRNA Length = 12353 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttttttgttgttttcttctt 383 |||||||||||||||||||| Sbjct: 10333 ttttttgttgttttcttctt 10352
>gb|AY435216.1| Sus scrofa T-box 21 (TBX21) mRNA, partial cds Length = 200 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 gttggggaggagaggagagt 318 |||||||||||||||||||| Sbjct: 58 gttggggaggagaggagagt 39
>gb|AC166570.2| Mus musculus chromosome 18, clone RP24-74O22, complete sequence Length = 163755 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 gggaggagaggagagtttac 322 |||||||||||||||||||| Sbjct: 62225 gggaggagaggagagtttac 62244
>gb|DQ132236.1| Arabidopsis thaliana ecotype Bs-1 At5g63850 gene, partial cds Length = 807 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 783 caagtacaacgactctttcctaagatca 756
>gb|DQ132235.1| Arabidopsis thaliana ecotype Te-0 At5g63850 gene, partial cds Length = 807 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 783 caagtacaacgactctttcctaagatca 756
>gb|DQ132231.1| Arabidopsis thaliana ecotype Tu-1 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132230.1| Arabidopsis thaliana ecotype Cvi-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132229.1| Arabidopsis thaliana ecotype Nok-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132228.1| Arabidopsis thaliana ecotype Lisse-1 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132227.1| Arabidopsis thaliana ecotype Ler-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132226.1| Arabidopsis thaliana ecotype Ita-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132225.1| Arabidopsis thaliana ecotype Ma-2 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132224.1| Arabidopsis thaliana ecotype Bla-10 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132223.1| Arabidopsis thaliana ecotype Me-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132222.1| Arabidopsis thaliana ecotype Da (1)-12 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132221.1| Arabidopsis thaliana ecotype Kas-1 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132220.1| Arabidopsis thaliana ecotype Ag-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>emb|AJ344259.1|SVI344259 Sulfolobus virus SIRV-2 genomic DNA Length = 35450 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 attattttttgttgttttcttctt 383 ||||||||||||| |||||||||| Sbjct: 5049 attattttttgtttttttcttctt 5026
>emb|CT010521.4| M.truncatula DNA sequence from clone MTH2-34D24 on chromosome 3, complete sequence Length = 104085 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ttttgttgttttcttcttgg 385 |||||||||||||||||||| Sbjct: 40136 ttttgttgttttcttcttgg 40155
>gb|AC130821.3| Mus musculus BAC clone RP23-205K12 from chromosome 13, complete sequence Length = 227411 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 gggaggagaggagagtttac 322 |||||||||||||||||||| Sbjct: 114433 gggaggagaggagagtttac 114452
>emb|CR726300.2|CNS0GNCY Tetraodon nigroviridis full-length cDNA Length = 1526 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gacggcggcgagccaccggc 46 |||||||||||||||||||| Sbjct: 783 gacggcggcgagccaccggc 802
>gb|AY368473.1| Sus scrofa isolate LWH006 natural resistance associated macrophage protein 1 (NRAMP1) gene, intron 6 and partial cds Length = 455 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttttttgttgttttcttctt 383 |||||||||||||||||||| Sbjct: 352 ttttttgttgttttcttctt 371
>emb|AL591214.8| Human DNA sequence from clone RP11-18I23 on chromosome 9 Contains part of one variant of the ROR2 gene for receptor tyrosine kinase-like orphan receptor 2, complete sequence Length = 66959 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cacggaacaatcctccatca 236 |||||||||||||||||||| Sbjct: 17703 cacggaacaatcctccatca 17684
>emb|AL353650.5| Human DNA sequence from clone RP11-344N19 on chromosome 10 Contains the 5' end of a novel gene (DKFZp761L0424) (KIAA1217) and a CpG island, complete sequence Length = 84778 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gtatgatcttccaatccaac 175 |||||||||||||||||||| Sbjct: 8120 gtatgatcttccaatccaac 8139
>emb|AL158047.9| Human DNA sequence from clone RP11-388B24 on chromosome 9 Contains a novel pseudogene, a novel gene, a DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 10 (RNA helicase) (HRH-J8) (DDX10) pseudogene and a ribosomal protein S2 (LLREP3) (RPS2) pseudogene, complete sequence Length = 201629 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 tttttgttgttttcttcttg 384 |||||||||||||||||||| Sbjct: 6997 tttttgttgttttcttcttg 7016
>emb|AL117348.26|HSDJ559A3 Human DNA sequence from clone RP4-559A3 on chromosome 1q41-42.2 Contains the 5' end of a novel gene (KIAA0792), the LEFTB gene for left-right determination, factor B, the PYCR2 gene for pyrroline-5-carboxylate reductase family, member 2, the EBAF gene for endometrial bleeding associated factor (left-right determination, factor A; transforming growth factor beta superfamily), a novel gene, an NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa (NDUFA3) pseudogene and two CpG islands, complete sequence Length = 127736 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 ttattttttgttgttttctt 380 |||||||||||||||||||| Sbjct: 80450 ttattttttgttgttttctt 80431
>emb|AL109797.18|HS1172N10 Human DNA sequence from clone RP5-1172N10 on chromosome Xp11.3-11.4 Contains the 3' end of the USP9X gene for X chromosome ubiquitin specific protease 9 (fat facets-like Drosophila), a novel gene and a CpG island, complete sequence Length = 129293 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttttttgttgttttcttctt 383 |||||||||||||||||||| Sbjct: 60229 ttttttgttgttttcttctt 60248
>gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206282 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 aaagagttggggaggagagg 313 |||||||||||||||||||| Sbjct: 182578 aaagagttggggaggagagg 182559
>emb|AL731792.12| Mouse DNA sequence from clone RP23-189P1 on chromosome 11 Contains the 5' end of a novel gene, the 3' end of the Spnb2 gene for spectrin beta 2 and a CpG island, complete sequence Length = 143722 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 attttttgttgttttcttct 382 |||||||||||||||||||| Sbjct: 12564 attttttgttgttttcttct 12545
>gb|AC079851.14| Homo sapiens 12 BAC RP11-349L8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 82421 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 ttattttttgttgttttctt 380 |||||||||||||||||||| Sbjct: 43890 ttattttttgttgttttctt 43871
>emb|BX324130.5| Zebrafish DNA sequence from clone DKEY-30J16 in linkage group 11, complete sequence Length = 209188 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 ttattttttgttgttttctt 380 |||||||||||||||||||| Sbjct: 71142 ttattttttgttgttttctt 71123
>gb|AC165950.1| Mus musculus BAC clone RP24-235L20 from chromosome 13, complete sequence Length = 178927 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 cctctaattattttttgttgtttt 377 |||| ||||||||||||||||||| Sbjct: 126132 cctccaattattttttgttgtttt 126155
>emb|CR859589.1| Pongo pygmaeus mRNA; cDNA DKFZp459O184 (from clone DKFZp459O184) Length = 3241 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 ttattttttgttgttttctt 380 |||||||||||||||||||| Sbjct: 1823 ttattttttgttgttttctt 1804
>gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169124 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 attattttttgttgttttcttctt 383 |||||||||||||| ||||||||| Sbjct: 114124 attattttttgttgctttcttctt 114101
>gb|AC023694.4| Drosophila melanogaster X BAC RP98-18B11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170301 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 attattttttgttgttttcttctt 383 |||||||||||||| ||||||||| Sbjct: 156299 attattttttgttgctttcttctt 156276
>gb|AC074322.4| Homo sapiens chromosome 10 clone RP11-168O22, complete sequence Length = 140880 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 aattattttttgttgttttc 378 |||||||||||||||||||| Sbjct: 53339 aattattttttgttgttttc 53320
>gb|AC117513.4| Homo sapiens 3 BAC RP11-451B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166960 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 tctaattattttttgttgttttct 379 ||||| |||||||||||||||||| Sbjct: 89176 tctaaatattttttgttgttttct 89153
>gb|AC108749.11| Homo sapiens 3 BAC RP11-288B15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170796 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 tctaattattttttgttgttttct 379 ||||| |||||||||||||||||| Sbjct: 10564 tctaaatattttttgttgttttct 10587
>gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 219861 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 aaagagttggggaggagagg 313 |||||||||||||||||||| Sbjct: 197420 aaagagttggggaggagagg 197439
>gb|AC023738.3| Drosophila melanogaster X BAC RP98-6F4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 103196 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttttttgttgttttcttctt 383 |||||||||||||||||||| Sbjct: 20444 ttttttgttgttttcttctt 20463
>gb|AC084290.15| Homo sapiens 12 BAC RP11-568G5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 55001 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tcctctaattattttttgtt 372 |||||||||||||||||||| Sbjct: 52871 tcctctaattattttttgtt 52852
>gb|AC108074.3| Homo sapiens BAC clone RP11-717H13 from 4, complete sequence Length = 128635 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 taattattttttgttgtttt 377 |||||||||||||||||||| Sbjct: 54774 taattattttttgttgtttt 54755
>gb|AE002160.2| Chlamydia muridarum Nigg, complete genome Length = 1072950 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 acagaagacggaggaaccac 155 |||||||||||||||||||| Sbjct: 209878 acagaagacggaggaaccac 209859
>gb|AC157528.2| Pan troglodytes BAC clone CH251-422M6 from chromosome unknown, complete sequence Length = 154857 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 tcctctaattattttttgtt 372 |||||||||||||||||||| Sbjct: 118332 tcctctaattattttttgtt 118351
>gb|AC010852.7|AC010852 Arabidopsis thaliana chromosome 1 BAC T12P18 genomic sequence, complete sequence Length = 79469 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 191 caagtacaacgactcattgctaagatca 218 ||||||||||||||| || ||||||||| Sbjct: 42607 caagtacaacgactctttcctaagatca 42634
>gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence Length = 111566 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tctaattattttttgttgtt 375 |||||||||||||||||||| Sbjct: 31616 tctaattattttttgttgtt 31597
>gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromosome unknown, complete sequence Length = 204271 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 tcctctaattattttttgtt 372 |||||||||||||||||||| Sbjct: 78671 tcctctaattattttttgtt 78690
>gb|AC160568.2| Pan troglodytes BAC clone CH251-293A11 from chromosome unknown, complete sequence Length = 159393 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 ttattttttgttgttttctt 380 |||||||||||||||||||| Sbjct: 74036 ttattttttgttgttttctt 74017
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 ttattttttgttgttttctt 380 |||||||||||||||||||| Sbjct: 691782 ttattttttgttgttttctt 691801
>dbj|AP003515.1| Clostridium perfringens str. 13 plasmid pCP13 DNA, complete sequence Length = 54310 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 aactgacaataatatgtacaagta 196 ||||||||||||||| |||||||| Sbjct: 44575 aactgacaataatatttacaagta 44552
>dbj|AB001684.1| Chlorella vulgaris C-27 chloroplast DNA, complete sequence Length = 150613 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 ttattttttgttgttttctt 380 |||||||||||||||||||| Sbjct: 87588 ttattttttgttgttttctt 87569
>gb|AC154790.2| Mus musculus BAC clone RP24-481A4 from 17, complete sequence Length = 194675 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 ttattttttgttgttttctt 380 |||||||||||||||||||| Sbjct: 191706 ttattttttgttgttttctt 191725
>gb|AE003450.4| Drosophila melanogaster chromosome X, section 34 of 74 of the complete sequence Length = 232514 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 attattttttgttgttttcttctt 383 |||||||||||||| ||||||||| Sbjct: 38985 attattttttgttgctttcttctt 38962
>gb|AE003447.5| Drosophila melanogaster chromosome X, section 31 of 74 of the complete sequence Length = 288721 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 ttttttgttgttttcttctt 383 |||||||||||||||||||| Sbjct: 104288 ttttttgttgttttcttctt 104269
>emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chromosome 2, complete sequence Length = 189998 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 ttattttttgttgttttctt 380 |||||||||||||||||||| Sbjct: 134393 ttattttttgttgttttctt 134412
>gb|AF041330.1|AF041330 Bodo saltans NADH dehydrogenase subunit 5 (ND5) mRNA, kinetoplast gene encoding kinetoplast protein, partial cds Length = 639 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 taattattttttgttgtttt 377 |||||||||||||||||||| Sbjct: 144 taattattttttgttgtttt 163
>emb|CT033752.6| Mouse DNA sequence from clone RP23-140I20 on chromosome 17, complete sequence Length = 216455 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 ttattttttgttgttttctt 380 |||||||||||||||||||| Sbjct: 162325 ttattttttgttgttttctt 162344
>emb|AL672188.6| Mouse DNA sequence from clone RP23-53B2 on chromosome X, complete sequence Length = 150121 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 gcagcctttgtgagctgcag 120 |||||||||||||||||||| Sbjct: 43901 gcagcctttgtgagctgcag 43882 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,588,536 Number of Sequences: 3902068 Number of extensions: 4588536 Number of successful extensions: 127217 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127024 Number of HSP's gapped (non-prelim): 193 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
