ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NFAC1_MOUSE (O88942) Nuclear factor of activated T-cells, cytopl... 31 1.4
2NFAC1_PIG (O77638) Nuclear factor of activated T-cells, cytoplas... 31 1.8
3NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytopl... 30 4.1
4PROP_CAVPO (Q64181) Properdin precursor (Factor P) 30 4.1
5LAC1_CRYPA (Q03966) Laccase precursor (EC 1.10.3.2) (Benzenediol... 29 6.9
6PROP_MOUSE (P11680) Properdin precursor (Factor P) 28 9.1

>NFAC1_MOUSE (O88942) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc)
          Length = 717

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 291 DPSTMKVASQISSSSAGTAVTLF-LGFSYDLRPPRAFQ*KQPCGKGASDLPQDPFSRSMS 467
           DPS +  AS +SS S  +  + +   +SY    P+    + PC    +  P++ F RS+ 
Sbjct: 169 DPSCLSPASSLSSRSCNSEASSYESNYSYPYASPQTSPWQSPCVSPKTTDPEEGFPRSLG 228

Query: 468 S 470
           +
Sbjct: 229 A 229



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>NFAC1_PIG (O77638) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc) (NFATmac)
          Length = 822

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 291 DPSTMKVASQISSSSAGTAVTLF-LGFSYDLRPPRAFQ*KQPCGKGASDLPQDPFSRSMS 467
           DPS +  AS +SS S  +  + +   FSY    P+    + PC    +  P++ F R + 
Sbjct: 159 DPSCLSPASSLSSRSCNSEASSYESSFSYPYASPQTSPWQSPCVSPKTTDPEEGFPRGLG 218

Query: 468 S 470
           +
Sbjct: 219 A 219



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>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc)
          Length = 943

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 291 DPSTMKVASQISSSSAGTAVTLF-LGFSYDLRPPRAFQ*KQPCGKGASDLPQDPFSRSMS 467
           DPS +  AS +SS S  +  + +   +SY    P+    + PC    +  P++ F R + 
Sbjct: 167 DPSCLSPASSLSSRSCNSEASSYESNYSYPYASPQTSPWQSPCVSPKTTDPEEGFPRGLG 226

Query: 468 S 470
           +
Sbjct: 227 A 227



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>PROP_CAVPO (Q64181) Properdin precursor (Factor P)|
          Length = 470

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -3

Query: 242 GQSRQHRSCVGGGGVI*CNKARVLLSLVILWELFGCVSDHLYL*LFKFSQWIQDRPFSVE 63
           G   +HR C+G GG    NKA   L     W+L  C        +  +S W    P +V 
Sbjct: 95  GSQLRHRRCIGWGGQCSENKAPGTLE----WQLQACEEQQCCPEMGGWSNWEPWGPCTVT 150

Query: 62  CN 57
           C+
Sbjct: 151 CS 152



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>LAC1_CRYPA (Q03966) Laccase precursor (EC 1.10.3.2) (Benzenediol:oxygen|
           oxidoreductase) (Urishiol oxidase)
          Length = 591

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 448 GSCGKSLAPFPQGCFYWNALGGLKSYENPKNKVTAVPADEE 326
           G CGKS  P+P    ++N      S  +P NK  A PAD E
Sbjct: 330 GFCGKSNNPYPAAIIHYNG----ASNSHPTNKGVA-PADHE 365



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>PROP_MOUSE (P11680) Properdin precursor (Factor P)|
          Length = 464

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = -3

Query: 260 SLVSVAGQSRQHRSCVGGGGVI*CNKARVLLSLVILWELFGCVSDHLYL*LFKFSQWIQD 81
           S+    G   +HR CVG GG    N A   L     W+L  C        +  +S+W   
Sbjct: 86  SVTCSEGSQLRHRRCVGRGGQCSENVAPGTLE----WQLQACEDQPCCPEMGGWSEWGPW 141

Query: 80  RPFSVECN 57
            P SV C+
Sbjct: 142 GPCSVTCS 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,644,047
Number of Sequences: 219361
Number of extensions: 1124877
Number of successful extensions: 3083
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3083
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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